data_6SVM # _model_server_result.job_id 1axrr0jMaBkj3EMi6ZrNMw _model_server_result.datetime_utc '2024-11-25 12:47:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6svm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":701}' # _entry.id 6SVM # _exptl.entry_id 6SVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLUCOSE-6-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SVM _cell.length_a 151.995 _cell.length_b 151.995 _cell.length_c 165.803 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 461 A SER 455 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc2 A O ARG 462 A ARG 456 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc3 A O THR 464 A THR 458 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc4 E O2 UD2 . A UD2 703 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc5 B O SER 461 B SER 455 1_555 I MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc6 B O ARG 462 B ARG 456 1_555 I MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc7 B O THR 464 B THR 458 1_555 I MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc8 H O2 UD2 . B UD2 702 1_555 I MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6Q _chem_comp.mon_nstd_flag . _chem_comp.name GLUCOSE-6-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6Q sing 83 n n C1 O1 G6Q doub 84 n n C1 H1 G6Q sing 85 n n C2 C3 G6Q sing 86 n n C2 O2 G6Q sing 87 n n C2 H2 G6Q sing 88 n n C3 C4 G6Q sing 89 n n C3 O3 G6Q sing 90 n n C3 H3 G6Q sing 91 n n C4 C5 G6Q sing 92 n n C4 O4 G6Q sing 93 n n C4 H4 G6Q sing 94 n n C5 C6 G6Q sing 95 n n C5 O5 G6Q sing 96 n n C5 H5 G6Q sing 97 n n C6 O6 G6Q sing 98 n n C6 H61 G6Q sing 99 n n C6 H62 G6Q sing 100 n n O2 HO2 G6Q sing 101 n n O3 HO3 G6Q sing 102 n n O4 HO4 G6Q sing 103 n n O5 HO5 G6Q sing 104 n n O6 P G6Q sing 105 n n P O1P G6Q doub 106 n n P O2P G6Q sing 107 n n P O3P G6Q sing 108 n n O2P HOP2 G6Q sing 109 n n O3P HOP3 G6Q sing 110 n n # _atom_sites.entry_id 6SVM _atom_sites.fract_transf_matrix[1][1] 0.006579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 G6Q A 1 701 1 G6Q G6Q . D 3 GLU A 1 702 1 GLU GLU . E 4 UD2 A 1 703 1 UD2 UD2 . F 5 MG A 1 704 2 MG MG . G 2 G6Q B 1 701 2 G6Q G6Q . H 4 UD2 B 1 702 3 UD2 UD2 . I 5 MG B 1 703 4 MG MG . J 6 HOH A 1 801 14 HOH HOH . J 6 HOH A 2 802 26 HOH HOH . J 6 HOH A 3 803 43 HOH HOH . J 6 HOH A 4 804 2 HOH HOH . J 6 HOH A 5 805 25 HOH HOH . J 6 HOH A 6 806 30 HOH HOH . J 6 HOH A 7 807 35 HOH HOH . J 6 HOH A 8 808 8 HOH HOH . J 6 HOH A 9 809 1 HOH HOH . J 6 HOH A 10 810 19 HOH HOH . J 6 HOH A 11 811 52 HOH HOH . J 6 HOH A 12 812 53 HOH HOH . J 6 HOH A 13 813 5 HOH HOH . J 6 HOH A 14 814 56 HOH HOH . J 6 HOH A 15 815 13 HOH HOH . J 6 HOH A 16 816 100 HOH HOH . J 6 HOH A 17 817 6 HOH HOH . J 6 HOH A 18 818 58 HOH HOH . J 6 HOH A 19 819 50 HOH HOH . J 6 HOH A 20 820 3 HOH HOH . J 6 HOH A 21 821 22 HOH HOH . J 6 HOH A 22 822 55 HOH HOH . J 6 HOH A 23 823 15 HOH HOH . J 6 HOH A 24 824 65 HOH HOH . J 6 HOH A 25 825 87 HOH HOH . J 6 HOH A 26 826 51 HOH HOH . J 6 HOH A 27 827 41 HOH HOH . J 6 HOH A 28 828 42 HOH HOH . J 6 HOH A 29 829 10 HOH HOH . J 6 HOH A 30 830 48 HOH HOH . J 6 HOH A 31 831 9 HOH HOH . J 6 HOH A 32 832 24 HOH HOH . J 6 HOH A 33 833 40 HOH HOH . J 6 HOH A 34 834 12 HOH HOH . J 6 HOH A 35 835 36 HOH HOH . J 6 HOH A 36 836 27 HOH HOH . J 6 HOH A 37 837 16 HOH HOH . J 6 HOH A 38 838 45 HOH HOH . J 6 HOH A 39 839 106 HOH HOH . J 6 HOH A 40 840 47 HOH HOH . J 6 HOH A 41 841 54 HOH HOH . J 6 HOH A 42 842 44 HOH HOH . J 6 HOH A 43 843 98 HOH HOH . J 6 HOH A 44 844 7 HOH HOH . J 6 HOH A 45 845 62 HOH HOH . J 6 HOH A 46 846 68 HOH HOH . K 6 HOH B 1 801 4 HOH HOH . K 6 HOH B 2 802 32 HOH HOH . K 6 HOH B 3 803 28 HOH HOH . K 6 HOH B 4 804 18 HOH HOH . K 6 HOH B 5 805 23 HOH HOH . K 6 HOH B 6 806 67 HOH HOH . K 6 HOH B 7 807 11 HOH HOH . K 6 HOH B 8 808 96 HOH HOH . K 6 HOH B 9 809 31 HOH HOH . K 6 HOH B 10 810 57 HOH HOH . K 6 HOH B 11 811 39 HOH HOH . K 6 HOH B 12 812 33 HOH HOH . K 6 HOH B 13 813 29 HOH HOH . K 6 HOH B 14 814 38 HOH HOH . K 6 HOH B 15 815 101 HOH HOH . K 6 HOH B 16 816 17 HOH HOH . K 6 HOH B 17 817 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6Q . . . G 2 0.382 36.516 -17.111 1 55.66 ? C1 G6Q 701 B 1 HETATM 2 C C2 G6Q . . . G 2 -0.664 35.704 -16.322 1 59.08 ? C2 G6Q 701 B 1 HETATM 3 C C3 G6Q . . . G 2 -2.075 35.972 -16.889 1 59.97 ? C3 G6Q 701 B 1 HETATM 4 C C4 G6Q . . . G 2 -2.981 34.742 -16.865 1 59.19 ? C4 G6Q 701 B 1 HETATM 5 C C5 G6Q . . . G 2 -4.458 35.1 -17.025 1 62.86 ? C5 G6Q 701 B 1 HETATM 6 C C6 G6Q . . . G 2 -5.331 33.874 -17.179 1 62.42 ? C6 G6Q 701 B 1 HETATM 7 O O1 G6Q . . . G 2 1.519 36.15 -17.111 1 51.46 ? O1 G6Q 701 B 1 HETATM 8 O O2 G6Q . . . G 2 -0.319 34.317 -16.345 1 57.04 ? O2 G6Q 701 B 1 HETATM 9 O O3 G6Q . . . G 2 -2.006 36.471 -18.219 1 63.84 ? O3 G6Q 701 B 1 HETATM 10 O O4 G6Q . . . G 2 -2.614 33.863 -17.921 1 59.66 ? O4 G6Q 701 B 1 HETATM 11 O O5 G6Q . . . G 2 -4.871 35.883 -15.904 1 65.65 ? O5 G6Q 701 B 1 HETATM 12 O O6 G6Q . . . G 2 -5.202 33.069 -15.989 1 61.97 ? O6 G6Q 701 B 1 HETATM 13 P P G6Q . . . G 2 -5.546 31.493 -16.003 1 58.84 ? P G6Q 701 B 1 HETATM 14 O O1P G6Q . . . G 2 -4.77 30.77 -17.043 1 56.96 ? O1P G6Q 701 B 1 HETATM 15 O O2P G6Q . . . G 2 -5.251 31.001 -14.591 1 68.19 ? O2P G6Q 701 B 1 HETATM 16 O O3P G6Q . . . G 2 -7.04 31.396 -16.183 1 54.99 ? O3P G6Q 701 B 1 HETATM 17 H H1 G6Q . . . G 2 0.028 37.4 -17.639 1 66.86 ? H1 G6Q 701 B 1 HETATM 18 H H2 G6Q . . . G 2 -0.62 35.941 -15.26 1 70.98 ? H2 G6Q 701 B 1 HETATM 19 H H3 G6Q . . . G 2 -2.535 36.794 -16.342 1 72.04 ? H3 G6Q 701 B 1 HETATM 20 H H4 G6Q . . . G 2 -2.797 34.154 -15.967 1 71.1 ? H4 G6Q 701 B 1 HETATM 21 H H5 G6Q . . . G 2 -4.607 35.801 -17.845 1 75.51 ? H5 G6Q 701 B 1 HETATM 22 H H61 G6Q . . . G 2 -6.387 34.12 -17.279 1 74.98 ? H61 G6Q 701 B 1 HETATM 23 H H62 G6Q . . . G 2 -5.062 33.281 -18.052 1 74.98 ? H62 G6Q 701 B 1 HETATM 24 H HO2 G6Q . . . G 2 -0.427 33.986 -17.275 1 68.52 ? HO2 G6Q 701 B 1 HETATM 25 H HO3 G6Q . . . G 2 -2.163 37.451 -18.196 1 76.68 ? HO3 G6Q 701 B 1 HETATM 26 H HO4 G6Q . . . G 2 -2.428 32.966 -17.537 1 71.67 ? HO4 G6Q 701 B 1 HETATM 27 H HO5 G6Q . . . G 2 -4.984 35.277 -15.126 1 78.86 ? HO5 G6Q 701 B 1 HETATM 28 H HOP2 G6Q . . . G 2 -4.396 31.21 -14.131 1 81.91 ? HOP2 G6Q 701 B 1 HETATM 29 H HOP3 G6Q . . . G 2 -7.696 31.276 -15.447 1 66.07 ? HOP3 G6Q 701 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #