data_6SVO # _model_server_result.job_id VU9QiOx5nvVfTjZ2LM8krA _model_server_result.datetime_utc '2024-11-24 03:57:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6svo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 6SVO # _exptl.entry_id 6SVO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SVO _cell.length_a 152.848 _cell.length_b 152.848 _cell.length_c 165.413 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SVO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 242 A ASP 242 1_555 A N SEP 243 A SEP 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SEP 243 A SEP 243 1_555 A N THR 244 A THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C ASP 242 B ASP 242 1_555 B N SEP 243 B SEP 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C SEP 243 B SEP 243 1_555 B N THR 244 B THR 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 133 n n N H GLU sing 134 n n N H2 GLU sing 135 n n CA C GLU sing 136 n n CA CB GLU sing 137 n n CA HA GLU sing 138 n n C O GLU doub 139 n n C OXT GLU sing 140 n n CB CG GLU sing 141 n n CB HB2 GLU sing 142 n n CB HB3 GLU sing 143 n n CG CD GLU sing 144 n n CG HG2 GLU sing 145 n n CG HG3 GLU sing 146 n n CD OE1 GLU doub 147 n n CD OE2 GLU sing 148 n n OE2 HE2 GLU sing 149 n n OXT HXT GLU sing 150 n n # _atom_sites.entry_id 6SVO _atom_sites.fract_transf_matrix[1][1] 0.006542 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AGP A 1 701 1 AGP AGP . D 3 GLU A 1 702 1 GLU GLU . E 2 AGP B 1 701 2 AGP AGP . F 4 HOH A 1 801 174 HOH HOH . F 4 HOH A 2 802 107 HOH HOH . F 4 HOH A 3 803 190 HOH HOH . F 4 HOH A 4 804 7 HOH HOH . F 4 HOH A 5 805 1 HOH HOH . F 4 HOH A 6 806 22 HOH HOH . F 4 HOH A 7 807 28 HOH HOH . F 4 HOH A 8 808 69 HOH HOH . F 4 HOH A 9 809 44 HOH HOH . F 4 HOH A 10 810 76 HOH HOH . F 4 HOH A 11 811 26 HOH HOH . F 4 HOH A 12 812 183 HOH HOH . F 4 HOH A 13 813 4 HOH HOH . F 4 HOH A 14 814 88 HOH HOH . F 4 HOH A 15 815 53 HOH HOH . F 4 HOH A 16 816 56 HOH HOH . F 4 HOH A 17 817 68 HOH HOH . F 4 HOH A 18 818 15 HOH HOH . F 4 HOH A 19 819 52 HOH HOH . F 4 HOH A 20 820 96 HOH HOH . F 4 HOH A 21 821 181 HOH HOH . F 4 HOH A 22 822 30 HOH HOH . F 4 HOH A 23 823 3 HOH HOH . F 4 HOH A 24 824 48 HOH HOH . F 4 HOH A 25 825 8 HOH HOH . F 4 HOH A 26 826 114 HOH HOH . F 4 HOH A 27 827 59 HOH HOH . F 4 HOH A 28 828 65 HOH HOH . F 4 HOH A 29 829 73 HOH HOH . F 4 HOH A 30 830 16 HOH HOH . F 4 HOH A 31 831 50 HOH HOH . F 4 HOH A 32 832 13 HOH HOH . F 4 HOH A 33 833 37 HOH HOH . F 4 HOH A 34 834 41 HOH HOH . F 4 HOH A 35 835 162 HOH HOH . F 4 HOH A 36 836 123 HOH HOH . F 4 HOH A 37 837 5 HOH HOH . F 4 HOH A 38 838 27 HOH HOH . F 4 HOH A 39 839 54 HOH HOH . F 4 HOH A 40 840 23 HOH HOH . F 4 HOH A 41 841 11 HOH HOH . F 4 HOH A 42 842 116 HOH HOH . F 4 HOH A 43 843 78 HOH HOH . F 4 HOH A 44 844 79 HOH HOH . F 4 HOH A 45 845 83 HOH HOH . F 4 HOH A 46 846 29 HOH HOH . F 4 HOH A 47 847 32 HOH HOH . F 4 HOH A 48 848 204 HOH HOH . F 4 HOH A 49 849 194 HOH HOH . F 4 HOH A 50 850 12 HOH HOH . F 4 HOH A 51 851 85 HOH HOH . F 4 HOH A 52 852 82 HOH HOH . F 4 HOH A 53 853 93 HOH HOH . F 4 HOH A 54 854 70 HOH HOH . F 4 HOH A 55 855 67 HOH HOH . F 4 HOH A 56 856 36 HOH HOH . F 4 HOH A 57 857 189 HOH HOH . F 4 HOH A 58 858 127 HOH HOH . F 4 HOH A 59 859 148 HOH HOH . F 4 HOH A 60 860 57 HOH HOH . F 4 HOH A 61 861 143 HOH HOH . F 4 HOH A 62 862 206 HOH HOH . G 4 HOH B 1 801 205 HOH HOH . G 4 HOH B 2 802 109 HOH HOH . G 4 HOH B 3 803 47 HOH HOH . G 4 HOH B 4 804 2 HOH HOH . G 4 HOH B 5 805 34 HOH HOH . G 4 HOH B 6 806 18 HOH HOH . G 4 HOH B 7 807 17 HOH HOH . G 4 HOH B 8 808 6 HOH HOH . G 4 HOH B 9 809 24 HOH HOH . G 4 HOH B 10 810 92 HOH HOH . G 4 HOH B 11 811 14 HOH HOH . G 4 HOH B 12 812 177 HOH HOH . G 4 HOH B 13 813 38 HOH HOH . G 4 HOH B 14 814 19 HOH HOH . G 4 HOH B 15 815 10 HOH HOH . G 4 HOH B 16 816 21 HOH HOH . G 4 HOH B 17 817 124 HOH HOH . G 4 HOH B 18 818 75 HOH HOH . G 4 HOH B 19 819 40 HOH HOH . G 4 HOH B 20 820 125 HOH HOH . G 4 HOH B 21 821 42 HOH HOH . G 4 HOH B 22 822 106 HOH HOH . G 4 HOH B 23 823 80 HOH HOH . G 4 HOH B 24 824 25 HOH HOH . G 4 HOH B 25 825 110 HOH HOH . G 4 HOH B 26 826 20 HOH HOH . G 4 HOH B 27 827 43 HOH HOH . G 4 HOH B 28 828 39 HOH HOH . G 4 HOH B 29 829 180 HOH HOH . G 4 HOH B 30 830 46 HOH HOH . G 4 HOH B 31 831 35 HOH HOH . G 4 HOH B 32 832 61 HOH HOH . G 4 HOH B 33 833 87 HOH HOH . G 4 HOH B 34 834 49 HOH HOH . G 4 HOH B 35 835 135 HOH HOH . G 4 HOH B 36 836 81 HOH HOH . G 4 HOH B 37 837 104 HOH HOH . G 4 HOH B 38 838 139 HOH HOH . G 4 HOH B 39 839 71 HOH HOH . G 4 HOH B 40 840 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . D 3 12.966 47.476 -61.236 1 82.51 ? N GLU 702 A 1 HETATM 2 C CA GLU . . . D 3 13.011 48.759 -61.992 1 82.84 ? CA GLU 702 A 1 HETATM 3 C C GLU . . . D 3 14.159 49.633 -61.501 1 82.39 ? C GLU 702 A 1 HETATM 4 O O GLU . . . D 3 14.676 50.472 -62.237 1 81.71 ? O GLU 702 A 1 HETATM 5 C CB GLU . . . D 3 11.683 49.508 -61.857 1 84.16 ? CB GLU 702 A 1 HETATM 6 C CG GLU . . . D 3 11.233 49.724 -60.42 1 85.35 ? CG GLU 702 A 1 HETATM 7 C CD GLU . . . D 3 9.977 50.566 -60.324 1 86.32 ? CD GLU 702 A 1 HETATM 8 O OE1 GLU . . . D 3 10.074 51.804 -60.462 1 85.67 ? OE1 GLU 702 A 1 HETATM 9 O OE2 GLU . . . D 3 8.889 49.987 -60.117 1 87.08 ? OE2 GLU 702 A 1 HETATM 10 O OXT GLU . . . D 3 14.594 49.522 -60.355 1 82.45 ? OXT GLU 702 A 1 HETATM 11 H H1 GLU . . . D 3 12.127 47.302 -60.994 1 82.51 ? H1 GLU 702 A 1 HETATM 12 H H2 GLU . . . D 3 13.268 46.817 -61.752 1 82.51 ? H2 GLU 702 A 1 HETATM 13 H H3 GLU . . . D 3 13.477 47.542 -60.51 1 82.51 ? H3 GLU 702 A 1 HETATM 14 H HA GLU . . . D 3 13.156 48.569 -62.931 1 82.84 ? HA GLU 702 A 1 HETATM 15 H HB2 GLU . . . D 3 11.774 50.38 -62.272 1 84.16 ? HB2 GLU 702 A 1 HETATM 16 H HB3 GLU . . . D 3 10.992 49 -62.31 1 84.16 ? HB3 GLU 702 A 1 HETATM 17 H HG2 GLU . . . D 3 11.049 48.863 -60.012 1 85.35 ? HG2 GLU 702 A 1 HETATM 18 H HG3 GLU . . . D 3 11.937 50.179 -59.932 1 85.35 ? HG3 GLU 702 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #