data_6SVP # _model_server_result.job_id 6tJYpAM-m_WcNHLlysXKAQ _model_server_result.datetime_utc '2024-11-07 19:06:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6svp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":703}' # _entry.id 6SVP # _exptl.entry_id 6SVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLUCOSE-6-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SVP _cell.length_a 152.628 _cell.length_b 152.628 _cell.length_c 166.526 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 461 A SER 455 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 A O ARG 462 A ARG 456 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc3 A O THR 464 A THR 458 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc4 C O2 UD1 . A UD1 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc5 B O SER 461 B SER 455 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc6 B O ARG 462 B ARG 456 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc7 B O THR 464 B THR 458 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc8 G O2 UD1 . B UD1 701 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id G6Q _chem_comp.mon_nstd_flag . _chem_comp.name GLUCOSE-6-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 G6Q sing 83 n n C1 O1 G6Q doub 84 n n C1 H1 G6Q sing 85 n n C2 C3 G6Q sing 86 n n C2 O2 G6Q sing 87 n n C2 H2 G6Q sing 88 n n C3 C4 G6Q sing 89 n n C3 O3 G6Q sing 90 n n C3 H3 G6Q sing 91 n n C4 C5 G6Q sing 92 n n C4 O4 G6Q sing 93 n n C4 H4 G6Q sing 94 n n C5 C6 G6Q sing 95 n n C5 O5 G6Q sing 96 n n C5 H5 G6Q sing 97 n n C6 O6 G6Q sing 98 n n C6 H61 G6Q sing 99 n n C6 H62 G6Q sing 100 n n O2 HO2 G6Q sing 101 n n O3 HO3 G6Q sing 102 n n O4 HO4 G6Q sing 103 n n O5 HO5 G6Q sing 104 n n O6 P G6Q sing 105 n n P O1P G6Q doub 106 n n P O2P G6Q sing 107 n n P O3P G6Q sing 108 n n O2P HOP2 G6Q sing 109 n n O3P HOP3 G6Q sing 110 n n # _atom_sites.entry_id 6SVP _atom_sites.fract_transf_matrix[1][1] 0.006552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UD1 A 1 701 1 UD1 UD1 . D 3 MG A 1 702 2 MG MG . E 4 G6Q A 1 703 1 G6Q G6Q . F 5 GLU A 1 704 1 GLU GLU . G 2 UD1 B 1 701 3 UD1 UD1 . H 3 MG B 1 702 4 MG MG . I 4 G6Q B 1 703 2 G6Q G6Q . J 6 HOH A 1 801 59 HOH HOH . J 6 HOH A 2 802 1 HOH HOH . J 6 HOH A 3 803 55 HOH HOH . J 6 HOH A 4 804 39 HOH HOH . J 6 HOH A 5 805 2 HOH HOH . J 6 HOH A 6 806 109 HOH HOH . J 6 HOH A 7 807 4 HOH HOH . J 6 HOH A 8 808 8 HOH HOH . J 6 HOH A 9 809 60 HOH HOH . J 6 HOH A 10 810 17 HOH HOH . J 6 HOH A 11 811 73 HOH HOH . J 6 HOH A 12 812 58 HOH HOH . J 6 HOH A 13 813 36 HOH HOH . J 6 HOH A 14 814 54 HOH HOH . J 6 HOH A 15 815 52 HOH HOH . J 6 HOH A 16 816 13 HOH HOH . J 6 HOH A 17 817 21 HOH HOH . J 6 HOH A 18 818 50 HOH HOH . J 6 HOH A 19 819 47 HOH HOH . J 6 HOH A 20 820 27 HOH HOH . J 6 HOH A 21 821 37 HOH HOH . J 6 HOH A 22 822 15 HOH HOH . J 6 HOH A 23 823 33 HOH HOH . J 6 HOH A 24 824 83 HOH HOH . J 6 HOH A 25 825 44 HOH HOH . J 6 HOH A 26 826 6 HOH HOH . J 6 HOH A 27 827 139 HOH HOH . J 6 HOH A 28 828 49 HOH HOH . J 6 HOH A 29 829 11 HOH HOH . J 6 HOH A 30 830 5 HOH HOH . J 6 HOH A 31 831 61 HOH HOH . J 6 HOH A 32 832 32 HOH HOH . J 6 HOH A 33 833 56 HOH HOH . J 6 HOH A 34 834 31 HOH HOH . J 6 HOH A 35 835 70 HOH HOH . J 6 HOH A 36 836 121 HOH HOH . J 6 HOH A 37 837 3 HOH HOH . J 6 HOH A 38 838 101 HOH HOH . J 6 HOH A 39 839 81 HOH HOH . J 6 HOH A 40 840 23 HOH HOH . J 6 HOH A 41 841 67 HOH HOH . J 6 HOH A 42 842 76 HOH HOH . J 6 HOH A 43 843 66 HOH HOH . J 6 HOH A 44 844 20 HOH HOH . J 6 HOH A 45 845 92 HOH HOH . J 6 HOH A 46 846 79 HOH HOH . K 6 HOH B 1 801 34 HOH HOH . K 6 HOH B 2 802 18 HOH HOH . K 6 HOH B 3 803 120 HOH HOH . K 6 HOH B 4 804 38 HOH HOH . K 6 HOH B 5 805 7 HOH HOH . K 6 HOH B 6 806 118 HOH HOH . K 6 HOH B 7 807 14 HOH HOH . K 6 HOH B 8 808 29 HOH HOH . K 6 HOH B 9 809 110 HOH HOH . K 6 HOH B 10 810 63 HOH HOH . K 6 HOH B 11 811 22 HOH HOH . K 6 HOH B 12 812 19 HOH HOH . K 6 HOH B 13 813 74 HOH HOH . K 6 HOH B 14 814 71 HOH HOH . K 6 HOH B 15 815 46 HOH HOH . K 6 HOH B 16 816 41 HOH HOH . K 6 HOH B 17 817 62 HOH HOH . K 6 HOH B 18 818 85 HOH HOH . K 6 HOH B 19 819 43 HOH HOH . K 6 HOH B 20 820 107 HOH HOH . K 6 HOH B 21 821 132 HOH HOH . K 6 HOH B 22 822 12 HOH HOH . K 6 HOH B 23 823 48 HOH HOH . K 6 HOH B 24 824 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 G6Q . . . I 4 36.635 -0.339 24.447 1 53.59 ? C1 G6Q 703 B 1 HETATM 2 C C2 G6Q . . . I 4 35.737 0.681 25.163 1 55.21 ? C2 G6Q 703 B 1 HETATM 3 C C3 G6Q . . . I 4 36.039 2.081 24.584 1 55.92 ? C3 G6Q 703 B 1 HETATM 4 C C4 G6Q . . . I 4 34.907 3.086 24.802 1 56.31 ? C4 G6Q 703 B 1 HETATM 5 C C5 G6Q . . . I 4 35.377 4.537 24.713 1 57.6 ? C5 G6Q 703 B 1 HETATM 6 C C6 G6Q . . . I 4 34.343 5.525 25.209 1 57.06 ? C6 G6Q 703 B 1 HETATM 7 O O1 G6Q . . . I 4 36.297 -1.484 24.403 1 51.56 ? O1 G6Q 703 B 1 HETATM 8 O O2 G6Q . . . I 4 34.368 0.288 25.043 1 52.35 ? O2 G6Q 703 B 1 HETATM 9 O O3 G6Q . . . I 4 36.332 1.994 23.195 1 59.52 ? O3 G6Q 703 B 1 HETATM 10 O O4 G6Q . . . I 4 33.899 2.867 23.821 1 55.45 ? O4 G6Q 703 B 1 HETATM 11 O O5 G6Q . . . I 4 36.58 4.69 25.465 1 65.1 ? O5 G6Q 703 B 1 HETATM 12 O O6 G6Q . . . I 4 33.054 5.171 24.667 1 59.99 ? O6 G6Q 703 B 1 HETATM 13 P P G6Q . . . I 4 31.717 5.589 25.472 1 54.2 ? P G6Q 703 B 1 HETATM 14 O O1P G6Q . . . I 4 31.766 5.132 26.886 1 62.17 ? O1P G6Q 703 B 1 HETATM 15 O O2P G6Q . . . I 4 31.617 7.1 25.361 1 50.54 ? O2P G6Q 703 B 1 HETATM 16 O O3P G6Q . . . I 4 30.566 4.976 24.68 1 55.31 ? O3P G6Q 703 B 1 HETATM 17 H H1 G6Q . . . I 4 37.557 0.037 24.005 1 64.33 ? H1 G6Q 703 B 1 HETATM 18 H H2 G6Q . . . I 4 35.899 0.659 26.24 1 66.29 ? H2 G6Q 703 B 1 HETATM 19 H H3 G6Q . . . I 4 36.969 2.457 25.009 1 67.13 ? H3 G6Q 703 B 1 HETATM 20 H H4 G6Q . . . I 4 34.396 2.879 25.742 1 67.61 ? H4 G6Q 703 B 1 HETATM 21 H H5 G6Q . . . I 4 35.715 4.783 23.707 1 69.14 ? H5 G6Q 703 B 1 HETATM 22 H H61 G6Q . . . I 4 34.24 5.513 26.293 1 68.5 ? H61 G6Q 703 B 1 HETATM 23 H H62 G6Q . . . I 4 34.586 6.549 24.93 1 68.5 ? H62 G6Q 703 B 1 HETATM 24 H HO2 G6Q . . . I 4 34.025 0.623 24.173 1 62.85 ? HO2 G6Q 703 B 1 HETATM 25 H HO3 G6Q . . . I 4 37.231 2.385 23.037 1 71.45 ? HO3 G6Q 703 B 1 HETATM 26 H HO4 G6Q . . . I 4 34.241 3.176 22.941 1 66.57 ? HO4 G6Q 703 B 1 HETATM 27 H HO5 G6Q . . . I 4 36.376 4.509 26.42 1 78.15 ? HO5 G6Q 703 B 1 HETATM 28 H HOP2 G6Q . . . I 4 31.518 7.68 26.161 1 60.68 ? HOP2 G6Q 703 B 1 HETATM 29 H HOP3 G6Q . . . I 4 30.52 4.03 24.382 1 66.4 ? HOP3 G6Q 703 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #