data_6SVP # _model_server_result.job_id vTyZIlVFhY8PVK-zjg6pTA _model_server_result.datetime_utc '2024-11-24 06:59:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6svp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 6SVP # _exptl.entry_id 6SVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SVP _cell.length_a 152.628 _cell.length_b 152.628 _cell.length_c 166.526 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 461 A SER 455 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc2 A O ARG 462 A ARG 456 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc3 A O THR 464 A THR 458 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc4 C O2 UD1 . A UD1 701 1_555 D MG MG . A MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc5 B O SER 461 B SER 455 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc6 B O ARG 462 B ARG 456 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc7 B O THR 464 B THR 458 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc8 G O2 UD1 . B UD1 701 1_555 H MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 130 n n N H GLU sing 131 n n N H2 GLU sing 132 n n CA C GLU sing 133 n n CA CB GLU sing 134 n n CA HA GLU sing 135 n n C O GLU doub 136 n n C OXT GLU sing 137 n n CB CG GLU sing 138 n n CB HB2 GLU sing 139 n n CB HB3 GLU sing 140 n n CG CD GLU sing 141 n n CG HG2 GLU sing 142 n n CG HG3 GLU sing 143 n n CD OE1 GLU doub 144 n n CD OE2 GLU sing 145 n n OE2 HE2 GLU sing 146 n n OXT HXT GLU sing 147 n n # _atom_sites.entry_id 6SVP _atom_sites.fract_transf_matrix[1][1] 0.006552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006552 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UD1 A 1 701 1 UD1 UD1 . D 3 MG A 1 702 2 MG MG . E 4 G6Q A 1 703 1 G6Q G6Q . F 5 GLU A 1 704 1 GLU GLU . G 2 UD1 B 1 701 3 UD1 UD1 . H 3 MG B 1 702 4 MG MG . I 4 G6Q B 1 703 2 G6Q G6Q . J 6 HOH A 1 801 59 HOH HOH . J 6 HOH A 2 802 1 HOH HOH . J 6 HOH A 3 803 55 HOH HOH . J 6 HOH A 4 804 39 HOH HOH . J 6 HOH A 5 805 2 HOH HOH . J 6 HOH A 6 806 109 HOH HOH . J 6 HOH A 7 807 4 HOH HOH . J 6 HOH A 8 808 8 HOH HOH . J 6 HOH A 9 809 60 HOH HOH . J 6 HOH A 10 810 17 HOH HOH . J 6 HOH A 11 811 73 HOH HOH . J 6 HOH A 12 812 58 HOH HOH . J 6 HOH A 13 813 36 HOH HOH . J 6 HOH A 14 814 54 HOH HOH . J 6 HOH A 15 815 52 HOH HOH . J 6 HOH A 16 816 13 HOH HOH . J 6 HOH A 17 817 21 HOH HOH . J 6 HOH A 18 818 50 HOH HOH . J 6 HOH A 19 819 47 HOH HOH . J 6 HOH A 20 820 27 HOH HOH . J 6 HOH A 21 821 37 HOH HOH . J 6 HOH A 22 822 15 HOH HOH . J 6 HOH A 23 823 33 HOH HOH . J 6 HOH A 24 824 83 HOH HOH . J 6 HOH A 25 825 44 HOH HOH . J 6 HOH A 26 826 6 HOH HOH . J 6 HOH A 27 827 139 HOH HOH . J 6 HOH A 28 828 49 HOH HOH . J 6 HOH A 29 829 11 HOH HOH . J 6 HOH A 30 830 5 HOH HOH . J 6 HOH A 31 831 61 HOH HOH . J 6 HOH A 32 832 32 HOH HOH . J 6 HOH A 33 833 56 HOH HOH . J 6 HOH A 34 834 31 HOH HOH . J 6 HOH A 35 835 70 HOH HOH . J 6 HOH A 36 836 121 HOH HOH . J 6 HOH A 37 837 3 HOH HOH . J 6 HOH A 38 838 101 HOH HOH . J 6 HOH A 39 839 81 HOH HOH . J 6 HOH A 40 840 23 HOH HOH . J 6 HOH A 41 841 67 HOH HOH . J 6 HOH A 42 842 76 HOH HOH . J 6 HOH A 43 843 66 HOH HOH . J 6 HOH A 44 844 20 HOH HOH . J 6 HOH A 45 845 92 HOH HOH . J 6 HOH A 46 846 79 HOH HOH . K 6 HOH B 1 801 34 HOH HOH . K 6 HOH B 2 802 18 HOH HOH . K 6 HOH B 3 803 120 HOH HOH . K 6 HOH B 4 804 38 HOH HOH . K 6 HOH B 5 805 7 HOH HOH . K 6 HOH B 6 806 118 HOH HOH . K 6 HOH B 7 807 14 HOH HOH . K 6 HOH B 8 808 29 HOH HOH . K 6 HOH B 9 809 110 HOH HOH . K 6 HOH B 10 810 63 HOH HOH . K 6 HOH B 11 811 22 HOH HOH . K 6 HOH B 12 812 19 HOH HOH . K 6 HOH B 13 813 74 HOH HOH . K 6 HOH B 14 814 71 HOH HOH . K 6 HOH B 15 815 46 HOH HOH . K 6 HOH B 16 816 41 HOH HOH . K 6 HOH B 17 817 62 HOH HOH . K 6 HOH B 18 818 85 HOH HOH . K 6 HOH B 19 819 43 HOH HOH . K 6 HOH B 20 820 107 HOH HOH . K 6 HOH B 21 821 132 HOH HOH . K 6 HOH B 22 822 12 HOH HOH . K 6 HOH B 23 823 48 HOH HOH . K 6 HOH B 24 824 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . F 5 47.794 -13.296 -19.526 1 85.83 ? N GLU 704 A 1 HETATM 2 C CA GLU . . . F 5 49.069 -13.462 -20.286 1 85.63 ? CA GLU 704 A 1 HETATM 3 C C GLU . . . F 5 49.872 -14.655 -19.771 1 84.06 ? C GLU 704 A 1 HETATM 4 O O GLU . . . F 5 50.684 -15.236 -20.493 1 81.46 ? O GLU 704 A 1 HETATM 5 C CB GLU . . . F 5 49.913 -12.186 -20.202 1 84.01 ? CB GLU 704 A 1 HETATM 6 C CG GLU . . . F 5 50.087 -11.645 -18.791 1 82.99 ? CG GLU 704 A 1 HETATM 7 C CD GLU . . . F 5 50.904 -10.368 -18.754 1 83.51 ? CD GLU 704 A 1 HETATM 8 O OE1 GLU . . . F 5 52.148 -10.452 -18.833 1 82.8 ? OE1 GLU 704 A 1 HETATM 9 O OE2 GLU . . . F 5 50.299 -9.279 -18.657 1 84 -1 OE2 GLU 704 A 1 HETATM 10 O OXT GLU . . . F 5 49.73 -15.068 -18.62 1 83.68 -1 OXT GLU 704 A 1 HETATM 11 H H1 GLU . . . F 5 47.394 -12.543 -19.78 1 103.02 ? H1 GLU 704 A 1 HETATM 12 H H2 GLU . . . F 5 47.259 -13.987 -19.692 1 103.02 ? H2 GLU 704 A 1 HETATM 13 H H3 GLU . . . F 5 47.971 -13.26 -18.655 1 103.02 ? H3 GLU 704 A 1 HETATM 14 H HA GLU . . . F 5 48.861 -13.622 -21.22 1 102.78 ? HA GLU 704 A 1 HETATM 15 H HB2 GLU . . . F 5 50.796 -12.373 -20.557 1 100.84 ? HB2 GLU 704 A 1 HETATM 16 H HB3 GLU . . . F 5 49.486 -11.495 -20.732 1 100.84 ? HB3 GLU 704 A 1 HETATM 17 H HG2 GLU . . . F 5 49.214 -11.454 -18.415 1 99.62 ? HG2 GLU 704 A 1 HETATM 18 H HG3 GLU . . . F 5 50.544 -12.309 -18.251 1 99.62 ? HG3 GLU 704 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #