data_6SVY
#
_model_server_result.job_id            4CJ6iVP4sgekPnuweTN_xA 
_model_server_result.datetime_utc      '2024-11-24 01:17:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6svy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":803}' 
#
_entry.id    6SVY 
#
_exptl.entry_id    6SVY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6SVY 
_cell.length_a            108.164 
_cell.length_b            108.164 
_cell.length_c            112.955 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SVY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 56 1_555 A SG CYS 11 A CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 29 A CYS 79 1_555 A SG CYS 684 A CYS 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 37 A CYS 87 1_555 A SG CYS 644 A CYS 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 92 A CYS 142 1_555 A SG CYS 360 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 A SG CYS 183 A CYS 233 1_555 A SG CYS 191 A CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf6 A SG CYS 570 A CYS 620 1_555 A SG CYS 696 A CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 A ND2 ASN 94 A ASN 144 1_555 D C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale2 A ND2 ASN 234 A ASN 284 1_555 E C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 274 A ASN 324 1_555 F C1 NAG . A NAG 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale4 A ND2 ASN 577 A ASN 627 1_555 G C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 A NE2 HIS 533 A HIS 583 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc2 A NE2 HIS 537 A HIS 587 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? 
metalc ? metalc3 A OE1 GLU 596 A GLU 646 1_555 B ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? 
metalc ? metalc4 B ZN ZN . A ZN 801 1_555 C O37 D0W . A D0W 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 309 n n 
C1 O1 NAG sing 310 n n 
C1 O5 NAG sing 311 n n 
C1 H1 NAG sing 312 n n 
C2 C3 NAG sing 313 n n 
C2 N2 NAG sing 314 n n 
C2 H2 NAG sing 315 n n 
C3 C4 NAG sing 316 n n 
C3 O3 NAG sing 317 n n 
C3 H3 NAG sing 318 n n 
C4 C5 NAG sing 319 n n 
C4 O4 NAG sing 320 n n 
C4 H4 NAG sing 321 n n 
C5 C6 NAG sing 322 n n 
C5 O5 NAG sing 323 n n 
C5 H5 NAG sing 324 n n 
C6 O6 NAG sing 325 n n 
C6 H61 NAG sing 326 n n 
C6 H62 NAG sing 327 n n 
C7 C8 NAG sing 328 n n 
C7 N2 NAG sing 329 n n 
C7 O7 NAG doub 330 n n 
C8 H81 NAG sing 331 n n 
C8 H82 NAG sing 332 n n 
C8 H83 NAG sing 333 n n 
N2 HN2 NAG sing 334 n n 
O1 HO1 NAG sing 335 n n 
O3 HO3 NAG sing 336 n n 
O4 HO4 NAG sing 337 n n 
O6 HO6 NAG sing 338 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6SVY 
_atom_sites.fract_transf_matrix[1][1]    0.009245 
_atom_sites.fract_transf_matrix[1][2]    0.005338 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010675 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008853 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 801 806 ZN ZN . 
C 3 D0W A 1 802 901 D0W LIG . 
D 4 NAG A 1 803 902 NAG NAG . 
E 4 NAG A 1 804 903 NAG NAG . 
F 4 NAG A 1 805 904 NAG NAG . 
G 4 NAG A 1 806 905 NAG NAG . 
H 5 HOH A 1 901 24 HOH HOH . 
H 5 HOH A 2 902 1 HOH HOH . 
H 5 HOH A 3 903 57 HOH HOH . 
H 5 HOH A 4 904 11 HOH HOH . 
H 5 HOH A 5 905 23 HOH HOH . 
H 5 HOH A 6 906 25 HOH HOH . 
H 5 HOH A 7 907 5 HOH HOH . 
H 5 HOH A 8 908 51 HOH HOH . 
H 5 HOH A 9 909 9 HOH HOH . 
H 5 HOH A 10 910 17 HOH HOH . 
H 5 HOH A 11 911 46 HOH HOH . 
H 5 HOH A 12 912 27 HOH HOH . 
H 5 HOH A 13 913 3 HOH HOH . 
H 5 HOH A 14 914 6 HOH HOH . 
H 5 HOH A 15 915 4 HOH HOH . 
H 5 HOH A 16 916 53 HOH HOH . 
H 5 HOH A 17 917 7 HOH HOH . 
H 5 HOH A 18 918 58 HOH HOH . 
H 5 HOH A 19 919 8 HOH HOH . 
H 5 HOH A 20 920 2 HOH HOH . 
H 5 HOH A 21 921 38 HOH HOH . 
H 5 HOH A 22 922 52 HOH HOH . 
H 5 HOH A 23 923 20 HOH HOH . 
H 5 HOH A 24 924 18 HOH HOH . 
H 5 HOH A 25 925 33 HOH HOH . 
H 5 HOH A 26 926 21 HOH HOH . 
H 5 HOH A 27 927 37 HOH HOH . 
H 5 HOH A 28 928 39 HOH HOH . 
H 5 HOH A 29 929 14 HOH HOH . 
H 5 HOH A 30 930 22 HOH HOH . 
H 5 HOH A 31 931 43 HOH HOH . 
H 5 HOH A 32 932 34 HOH HOH . 
H 5 HOH A 33 933 45 HOH HOH . 
H 5 HOH A 34 934 47 HOH HOH . 
H 5 HOH A 35 935 32 HOH HOH . 
H 5 HOH A 36 936 19 HOH HOH . 
H 5 HOH A 37 937 15 HOH HOH . 
H 5 HOH A 38 938 13 HOH HOH . 
H 5 HOH A 39 939 42 HOH HOH . 
H 5 HOH A 40 940 54 HOH HOH . 
H 5 HOH A 41 941 28 HOH HOH . 
H 5 HOH A 42 942 16 HOH HOH . 
H 5 HOH A 43 943 12 HOH HOH . 
H 5 HOH A 44 944 56 HOH HOH . 
H 5 HOH A 45 945 59 HOH HOH . 
H 5 HOH A 46 946 36 HOH HOH . 
H 5 HOH A 47 947 48 HOH HOH . 
H 5 HOH A 48 948 35 HOH HOH . 
H 5 HOH A 49 949 44 HOH HOH . 
H 5 HOH A 50 950 30 HOH HOH . 
H 5 HOH A 51 951 31 HOH HOH . 
H 5 HOH A 52 952 10 HOH HOH . 
H 5 HOH A 53 953 50 HOH HOH . 
H 5 HOH A 54 954 26 HOH HOH . 
H 5 HOH A 55 955 40 HOH HOH . 
H 5 HOH A 56 956 55 HOH HOH . 
H 5 HOH A 57 957 41 HOH HOH . 
H 5 HOH A 58 958 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 4 -32.037 15.529 33.358 1 55.2 ? C1 NAG 803 A 1 
HETATM 2 C C2 NAG . . . D 4 -33.493 15.543 33.833 1 55.42 ? C2 NAG 803 A 1 
HETATM 3 C C3 NAG . . . D 4 -33.778 14.325 34.71 1 62.45 ? C3 NAG 803 A 1 
HETATM 4 C C4 NAG . . . D 4 -33.387 13.044 33.985 1 58.85 ? C4 NAG 803 A 1 
HETATM 5 C C5 NAG . . . D 4 -31.937 13.126 33.517 1 58.36 ? C5 NAG 803 A 1 
HETATM 6 C C6 NAG . . . D 4 -31.512 11.932 32.693 1 55.59 ? C6 NAG 803 A 1 
HETATM 7 C C7 NAG . . . D 4 -34.575 17.739 34.067 1 53.34 ? C7 NAG 803 A 1 
HETATM 8 C C8 NAG . . . D 4 -34.774 18.929 34.954 1 54.49 ? C8 NAG 803 A 1 
HETATM 9 N N2 NAG . . . D 4 -33.794 16.77 34.555 1 52.62 ? N2 NAG 803 A 1 
HETATM 10 O O3 NAG . . . D 4 -35.161 14.295 35.046 1 59.54 ? O3 NAG 803 A 1 
HETATM 11 O O4 NAG . . . D 4 -33.531 11.928 34.856 1 58.71 ? O4 NAG 803 A 1 
HETATM 12 O O5 NAG . . . D 4 -31.758 14.286 32.691 1 54.9 ? O5 NAG 803 A 1 
HETATM 13 O O6 NAG . . . D 4 -32.187 11.888 31.443 1 55.64 ? O6 NAG 803 A 1 
HETATM 14 O O7 NAG . . . D 4 -35.096 17.66 32.96 1 64.64 ? O7 NAG 803 A 1 
HETATM 15 H H2 NAG . . . D 4 -34.07 15.492 33.048 1 66.5 ? H2 NAG 803 A 1 
HETATM 16 H H3 NAG . . . D 4 -33.254 14.396 35.53 1 74.94 ? H3 NAG 803 A 1 
HETATM 17 H H4 NAG . . . D 4 -33.969 12.925 33.211 1 70.62 ? H4 NAG 803 A 1 
HETATM 18 H H5 NAG . . . D 4 -31.354 13.199 34.297 1 70.04 ? H5 NAG 803 A 1 
HETATM 19 H H61 NAG . . . D 4 -31.711 11.116 33.191 1 66.7 ? H61 NAG 803 A 1 
HETATM 20 H H62 NAG . . . D 4 -30.55 11.982 32.534 1 66.7 ? H62 NAG 803 A 1 
HETATM 21 H H81 NAG . . . D 4 -35.235 19.632 34.457 1 65.38 ? H81 NAG 803 A 1 
HETATM 22 H H82 NAG . . . D 4 -33.907 19.26 35.255 1 65.38 ? H82 NAG 803 A 1 
HETATM 23 H H83 NAG . . . D 4 -35.311 18.673 35.728 1 65.38 ? H83 NAG 803 A 1 
HETATM 24 H HN2 NAG . . . D 4 -33.43 16.884 35.384 1 63.15 ? HN2 NAG 803 A 1 
HETATM 25 H HO3 NAG . . . D 4 -35.342 13.546 35.488 1 71.45 ? HO3 NAG 803 A 1 
HETATM 26 H HO4 NAG . . . D 4 -33.659 11.192 34.375 1 70.45 ? HO4 NAG 803 A 1 
HETATM 27 H HO6 NAG . . . D 4 -32.432 12.709 31.211 1 66.76 ? HO6 NAG 803 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           682 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#