data_6SW8 # _model_server_result.job_id Homs34ypRIv13v5_iDdElw _model_server_result.datetime_utc '2024-10-19 20:07:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 6SW8 # _exptl.entry_id 6SW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SW8 _cell.length_a 83.827 _cell.length_b 83.827 _cell.length_c 68.527 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6SW8 _atom_sites.fract_transf_matrix[1][1] 0.011929 _atom_sites.fract_transf_matrix[1][2] 0.006887 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 101 1 EDO EDO . D 2 EDO A 1 102 3 EDO EDO . E 3 PEG A 1 103 1 PEG PEG . F 3 PEG A 1 104 2 PEG PEG . G 2 EDO B 1 101 2 EDO EDO . H 4 HOH A 1 201 43 HOH HOH . H 4 HOH A 2 202 6 HOH HOH . H 4 HOH A 3 203 33 HOH HOH . H 4 HOH A 4 204 47 HOH HOH . H 4 HOH A 5 205 37 HOH HOH . H 4 HOH A 6 206 4 HOH HOH . H 4 HOH A 7 207 3 HOH HOH . H 4 HOH A 8 208 5 HOH HOH . H 4 HOH A 9 209 31 HOH HOH . H 4 HOH A 10 210 21 HOH HOH . H 4 HOH A 11 211 20 HOH HOH . H 4 HOH A 12 212 8 HOH HOH . H 4 HOH A 13 213 26 HOH HOH . H 4 HOH A 14 214 27 HOH HOH . H 4 HOH A 15 215 59 HOH HOH . H 4 HOH A 16 216 54 HOH HOH . H 4 HOH A 17 217 29 HOH HOH . H 4 HOH A 18 218 1 HOH HOH . H 4 HOH A 19 219 60 HOH HOH . H 4 HOH A 20 220 16 HOH HOH . H 4 HOH A 21 221 22 HOH HOH . H 4 HOH A 22 222 28 HOH HOH . H 4 HOH A 23 223 64 HOH HOH . H 4 HOH A 24 224 15 HOH HOH . H 4 HOH A 25 225 51 HOH HOH . H 4 HOH A 26 226 18 HOH HOH . H 4 HOH A 27 227 24 HOH HOH . H 4 HOH A 28 228 35 HOH HOH . H 4 HOH A 29 229 49 HOH HOH . H 4 HOH A 30 230 55 HOH HOH . H 4 HOH A 31 231 34 HOH HOH . H 4 HOH A 32 232 10 HOH HOH . H 4 HOH A 33 233 44 HOH HOH . H 4 HOH A 34 234 41 HOH HOH . H 4 HOH A 35 235 65 HOH HOH . H 4 HOH A 36 236 62 HOH HOH . H 4 HOH A 37 237 52 HOH HOH . H 4 HOH A 38 238 25 HOH HOH . H 4 HOH A 39 239 32 HOH HOH . I 4 HOH B 1 201 58 HOH HOH . I 4 HOH B 2 202 46 HOH HOH . I 4 HOH B 3 203 61 HOH HOH . I 4 HOH B 4 204 39 HOH HOH . I 4 HOH B 5 205 40 HOH HOH . I 4 HOH B 6 206 19 HOH HOH . I 4 HOH B 7 207 2 HOH HOH . I 4 HOH B 8 208 17 HOH HOH . I 4 HOH B 9 209 38 HOH HOH . I 4 HOH B 10 210 9 HOH HOH . I 4 HOH B 11 211 56 HOH HOH . I 4 HOH B 12 212 13 HOH HOH . I 4 HOH B 13 213 12 HOH HOH . I 4 HOH B 14 214 11 HOH HOH . I 4 HOH B 15 215 66 HOH HOH . I 4 HOH B 16 216 50 HOH HOH . I 4 HOH B 17 217 23 HOH HOH . I 4 HOH B 18 218 48 HOH HOH . I 4 HOH B 19 219 7 HOH HOH . I 4 HOH B 20 220 53 HOH HOH . I 4 HOH B 21 221 36 HOH HOH . I 4 HOH B 22 222 30 HOH HOH . I 4 HOH B 23 223 42 HOH HOH . I 4 HOH B 24 224 45 HOH HOH . I 4 HOH B 25 225 14 HOH HOH . I 4 HOH B 26 226 57 HOH HOH . I 4 HOH B 27 227 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 30.501 -15.405 13.007 1 93.85 ? C1 EDO 102 A 1 HETATM 2 O O1 EDO . . . D 2 30.471 -14.811 11.7 1 93.11 ? O1 EDO 102 A 1 HETATM 3 C C2 EDO . . . D 2 31.782 -16.197 13.219 1 93.34 ? C2 EDO 102 A 1 HETATM 4 O O2 EDO . . . D 2 32.891 -15.366 13.598 1 94.27 ? O2 EDO 102 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #