data_6SX8 # _model_server_result.job_id Z0KggDtSi4ouzhAbcZV9CA _model_server_result.datetime_utc '2025-08-31 12:53:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":602}' # _entry.id 6SX8 # _exptl.entry_id 6SX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.94 _cell.angle_gamma 90 _cell.entry_id 6SX8 _cell.length_a 45.537 _cell.length_b 38.014 _cell.length_c 137.23 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 26 A ASP 390 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc2 A OE2 GLU 28 A GLU 392 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A OE2 GLU 36 A GLU 400 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc4 A SG CYS 143 A CYS 507 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 A NE2 HIS 146 A HIS 510 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc6 A SG CYS 166 A CYS 530 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc7 A OD2 ASP 170 A ASP 534 1_555 D MN MN . A MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc8 D MN MN . A MN 602 1_555 G O HOH . A HOH 740 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc9 D MN MN . A MN 602 1_555 G O HOH . A HOH 765 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc10 B OD2 ASP 26 B ASP 390 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc11 B OE1 GLU 28 B GLU 392 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc12 B OE2 GLU 36 B GLU 400 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc13 B SG CYS 143 B CYS 507 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc14 B NE2 HIS 146 B HIS 510 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc15 B SG CYS 166 B CYS 530 1_555 E ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc16 B OD2 ASP 170 B ASP 534 1_555 F MN MN . B MN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc17 F MN MN . B MN 602 1_555 H O HOH . B HOH 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc18 F MN MN . B MN 602 1_555 H O HOH . B HOH 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc19 F MN MN . B MN 602 1_555 H O HOH . B HOH 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SX8 _atom_sites.fract_transf_matrix[1][1] 0.02196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001127 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 601 2 ZN ZN . D 3 MN A 1 602 1 MN MN . E 2 ZN B 1 601 2 ZN ZN . F 3 MN B 1 602 1 MN MN . G 4 HOH A 1 701 129 HOH HOH . G 4 HOH A 2 702 213 HOH HOH . G 4 HOH A 3 703 102 HOH HOH . G 4 HOH A 4 704 95 HOH HOH . G 4 HOH A 5 705 86 HOH HOH . G 4 HOH A 6 706 94 HOH HOH . G 4 HOH A 7 707 166 HOH HOH . G 4 HOH A 8 708 83 HOH HOH . G 4 HOH A 9 709 29 HOH HOH . G 4 HOH A 10 710 82 HOH HOH . G 4 HOH A 11 711 52 HOH HOH . G 4 HOH A 12 712 87 HOH HOH . G 4 HOH A 13 713 167 HOH HOH . G 4 HOH A 14 714 13 HOH HOH . G 4 HOH A 15 715 170 HOH HOH . G 4 HOH A 16 716 3 HOH HOH . G 4 HOH A 17 717 50 HOH HOH . G 4 HOH A 18 718 149 HOH HOH . G 4 HOH A 19 719 108 HOH HOH . G 4 HOH A 20 720 171 HOH HOH . G 4 HOH A 21 721 187 HOH HOH . G 4 HOH A 22 722 11 HOH HOH . G 4 HOH A 23 723 68 HOH HOH . G 4 HOH A 24 724 54 HOH HOH . G 4 HOH A 25 725 81 HOH HOH . G 4 HOH A 26 726 156 HOH HOH . G 4 HOH A 27 727 51 HOH HOH . G 4 HOH A 28 728 56 HOH HOH . G 4 HOH A 29 729 79 HOH HOH . G 4 HOH A 30 730 145 HOH HOH . G 4 HOH A 31 731 46 HOH HOH . G 4 HOH A 32 732 55 HOH HOH . G 4 HOH A 33 733 191 HOH HOH . G 4 HOH A 34 734 58 HOH HOH . G 4 HOH A 35 735 71 HOH HOH . G 4 HOH A 36 736 225 HOH HOH . G 4 HOH A 37 737 128 HOH HOH . G 4 HOH A 38 738 40 HOH HOH . G 4 HOH A 39 739 41 HOH HOH . G 4 HOH A 40 740 47 HOH HOH . G 4 HOH A 41 741 39 HOH HOH . G 4 HOH A 42 742 150 HOH HOH . G 4 HOH A 43 743 216 HOH HOH . G 4 HOH A 44 744 116 HOH HOH . G 4 HOH A 45 745 99 HOH HOH . G 4 HOH A 46 746 42 HOH HOH . G 4 HOH A 47 747 162 HOH HOH . G 4 HOH A 48 748 214 HOH HOH . G 4 HOH A 49 749 35 HOH HOH . G 4 HOH A 50 750 48 HOH HOH . G 4 HOH A 51 751 65 HOH HOH . G 4 HOH A 52 752 76 HOH HOH . G 4 HOH A 53 753 80 HOH HOH . G 4 HOH A 54 754 138 HOH HOH . G 4 HOH A 55 755 110 HOH HOH . G 4 HOH A 56 756 66 HOH HOH . G 4 HOH A 57 757 34 HOH HOH . G 4 HOH A 58 758 181 HOH HOH . G 4 HOH A 59 759 132 HOH HOH . G 4 HOH A 60 760 164 HOH HOH . G 4 HOH A 61 761 118 HOH HOH . G 4 HOH A 62 762 186 HOH HOH . G 4 HOH A 63 763 123 HOH HOH . G 4 HOH A 64 764 174 HOH HOH . G 4 HOH A 65 765 101 HOH HOH . G 4 HOH A 66 766 121 HOH HOH . G 4 HOH A 67 767 38 HOH HOH . G 4 HOH A 68 768 210 HOH HOH . G 4 HOH A 69 769 203 HOH HOH . G 4 HOH A 70 770 15 HOH HOH . G 4 HOH A 71 771 155 HOH HOH . G 4 HOH A 72 772 69 HOH HOH . G 4 HOH A 73 773 215 HOH HOH . G 4 HOH A 74 774 85 HOH HOH . G 4 HOH A 75 775 141 HOH HOH . G 4 HOH A 76 776 109 HOH HOH . G 4 HOH A 77 777 205 HOH HOH . G 4 HOH A 78 778 136 HOH HOH . G 4 HOH A 79 779 168 HOH HOH . G 4 HOH A 80 780 223 HOH HOH . G 4 HOH A 81 781 111 HOH HOH . G 4 HOH A 82 782 202 HOH HOH . G 4 HOH A 83 783 200 HOH HOH . G 4 HOH A 84 784 157 HOH HOH . G 4 HOH A 85 785 188 HOH HOH . G 4 HOH A 86 786 228 HOH HOH . G 4 HOH A 87 787 193 HOH HOH . G 4 HOH A 88 788 173 HOH HOH . G 4 HOH A 89 789 217 HOH HOH . G 4 HOH A 90 790 207 HOH HOH . G 4 HOH A 91 791 91 HOH HOH . G 4 HOH A 92 792 208 HOH HOH . G 4 HOH A 93 793 169 HOH HOH . H 4 HOH B 1 701 96 HOH HOH . H 4 HOH B 2 702 103 HOH HOH . H 4 HOH B 3 703 84 HOH HOH . H 4 HOH B 4 704 22 HOH HOH . H 4 HOH B 5 705 63 HOH HOH . H 4 HOH B 6 706 143 HOH HOH . H 4 HOH B 7 707 89 HOH HOH . H 4 HOH B 8 708 106 HOH HOH . H 4 HOH B 9 709 195 HOH HOH . H 4 HOH B 10 710 78 HOH HOH . H 4 HOH B 11 711 115 HOH HOH . H 4 HOH B 12 712 5 HOH HOH . H 4 HOH B 13 713 152 HOH HOH . H 4 HOH B 14 714 127 HOH HOH . H 4 HOH B 15 715 14 HOH HOH . H 4 HOH B 16 716 28 HOH HOH . H 4 HOH B 17 717 179 HOH HOH . H 4 HOH B 18 718 88 HOH HOH . H 4 HOH B 19 719 73 HOH HOH . H 4 HOH B 20 720 24 HOH HOH . H 4 HOH B 21 721 224 HOH HOH . H 4 HOH B 22 722 57 HOH HOH . H 4 HOH B 23 723 17 HOH HOH . H 4 HOH B 24 724 142 HOH HOH . H 4 HOH B 25 725 114 HOH HOH . H 4 HOH B 26 726 182 HOH HOH . H 4 HOH B 27 727 18 HOH HOH . H 4 HOH B 28 728 100 HOH HOH . H 4 HOH B 29 729 90 HOH HOH . H 4 HOH B 30 730 122 HOH HOH . H 4 HOH B 31 731 119 HOH HOH . H 4 HOH B 32 732 112 HOH HOH . H 4 HOH B 33 733 2 HOH HOH . H 4 HOH B 34 734 163 HOH HOH . H 4 HOH B 35 735 23 HOH HOH . H 4 HOH B 36 736 20 HOH HOH . H 4 HOH B 37 737 139 HOH HOH . H 4 HOH B 38 738 177 HOH HOH . H 4 HOH B 39 739 53 HOH HOH . H 4 HOH B 40 740 62 HOH HOH . H 4 HOH B 41 741 6 HOH HOH . H 4 HOH B 42 742 7 HOH HOH . H 4 HOH B 43 743 199 HOH HOH . H 4 HOH B 44 744 43 HOH HOH . H 4 HOH B 45 745 120 HOH HOH . H 4 HOH B 46 746 49 HOH HOH . H 4 HOH B 47 747 27 HOH HOH . H 4 HOH B 48 748 159 HOH HOH . H 4 HOH B 49 749 19 HOH HOH . H 4 HOH B 50 750 10 HOH HOH . H 4 HOH B 51 751 185 HOH HOH . H 4 HOH B 52 752 1 HOH HOH . H 4 HOH B 53 753 92 HOH HOH . H 4 HOH B 54 754 97 HOH HOH . H 4 HOH B 55 755 146 HOH HOH . H 4 HOH B 56 756 8 HOH HOH . H 4 HOH B 57 757 33 HOH HOH . H 4 HOH B 58 758 105 HOH HOH . H 4 HOH B 59 759 31 HOH HOH . H 4 HOH B 60 760 44 HOH HOH . H 4 HOH B 61 761 161 HOH HOH . H 4 HOH B 62 762 222 HOH HOH . H 4 HOH B 63 763 21 HOH HOH . H 4 HOH B 64 764 25 HOH HOH . H 4 HOH B 65 765 140 HOH HOH . H 4 HOH B 66 766 209 HOH HOH . H 4 HOH B 67 767 198 HOH HOH . H 4 HOH B 68 768 144 HOH HOH . H 4 HOH B 69 769 26 HOH HOH . H 4 HOH B 70 770 226 HOH HOH . H 4 HOH B 71 771 4 HOH HOH . H 4 HOH B 72 772 153 HOH HOH . H 4 HOH B 73 773 61 HOH HOH . H 4 HOH B 74 774 32 HOH HOH . H 4 HOH B 75 775 60 HOH HOH . H 4 HOH B 76 776 211 HOH HOH . H 4 HOH B 77 777 206 HOH HOH . H 4 HOH B 78 778 74 HOH HOH . H 4 HOH B 79 779 154 HOH HOH . H 4 HOH B 80 780 45 HOH HOH . H 4 HOH B 81 781 172 HOH HOH . H 4 HOH B 82 782 9 HOH HOH . H 4 HOH B 83 783 93 HOH HOH . H 4 HOH B 84 784 135 HOH HOH . H 4 HOH B 85 785 204 HOH HOH . H 4 HOH B 86 786 183 HOH HOH . H 4 HOH B 87 787 151 HOH HOH . H 4 HOH B 88 788 221 HOH HOH . H 4 HOH B 89 789 160 HOH HOH . H 4 HOH B 90 790 12 HOH HOH . H 4 HOH B 91 791 30 HOH HOH . H 4 HOH B 92 792 67 HOH HOH . H 4 HOH B 93 793 16 HOH HOH . H 4 HOH B 94 794 98 HOH HOH . H 4 HOH B 95 795 64 HOH HOH . H 4 HOH B 96 796 148 HOH HOH . H 4 HOH B 97 797 36 HOH HOH . H 4 HOH B 98 798 165 HOH HOH . H 4 HOH B 99 799 77 HOH HOH . H 4 HOH B 100 800 104 HOH HOH . H 4 HOH B 101 801 158 HOH HOH . H 4 HOH B 102 802 178 HOH HOH . H 4 HOH B 103 803 189 HOH HOH . H 4 HOH B 104 804 134 HOH HOH . H 4 HOH B 105 805 220 HOH HOH . H 4 HOH B 106 806 131 HOH HOH . H 4 HOH B 107 807 72 HOH HOH . H 4 HOH B 108 808 230 HOH HOH . H 4 HOH B 109 809 219 HOH HOH . H 4 HOH B 110 810 126 HOH HOH . H 4 HOH B 111 811 37 HOH HOH . H 4 HOH B 112 812 59 HOH HOH . H 4 HOH B 113 813 175 HOH HOH . H 4 HOH B 114 814 147 HOH HOH . H 4 HOH B 115 815 190 HOH HOH . H 4 HOH B 116 816 70 HOH HOH . H 4 HOH B 117 817 75 HOH HOH . H 4 HOH B 118 818 124 HOH HOH . H 4 HOH B 119 819 218 HOH HOH . H 4 HOH B 120 820 133 HOH HOH . H 4 HOH B 121 821 113 HOH HOH . H 4 HOH B 122 822 229 HOH HOH . H 4 HOH B 123 823 227 HOH HOH . H 4 HOH B 124 824 184 HOH HOH . H 4 HOH B 125 825 117 HOH HOH . H 4 HOH B 126 826 231 HOH HOH . H 4 HOH B 127 827 201 HOH HOH . H 4 HOH B 128 828 212 HOH HOH . H 4 HOH B 129 829 192 HOH HOH . H 4 HOH B 130 830 196 HOH HOH . H 4 HOH B 131 831 176 HOH HOH . H 4 HOH B 132 832 180 HOH HOH . H 4 HOH B 133 833 197 HOH HOH . H 4 HOH B 134 834 125 HOH HOH . H 4 HOH B 135 835 194 HOH HOH . H 4 HOH B 136 836 137 HOH HOH . H 4 HOH B 137 837 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.552 _atom_site.Cartn_y -15.324 _atom_site.Cartn_z 23.058 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.1 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #