data_6SXE # _model_server_result.job_id -J_PDAttBuzeoZLd7B964g _model_server_result.datetime_utc '2024-10-12 03:15:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 6SXE # _exptl.entry_id 6SXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.462 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SXE _cell.length_a 110.108 _cell.length_b 110.108 _cell.length_c 210.164 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H36 O9' _chem_comp.formula_weight 384.462 _chem_comp.id 7PG _chem_comp.mon_nstd_flag . _chem_comp.name 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OXT C1 7PG sing 63 n n OXT HOXT 7PG sing 64 n n C1 C2 7PG sing 65 n n C1 H11 7PG sing 66 n n C1 H12 7PG sing 67 n n C2 O1 7PG sing 68 n n C2 H21 7PG sing 69 n n C2 H22 7PG sing 70 n n O1 C3 7PG sing 71 n n C3 C4 7PG sing 72 n n C3 H31 7PG sing 73 n n C3 H32 7PG sing 74 n n C4 O2 7PG sing 75 n n C4 H41 7PG sing 76 n n C4 H42 7PG sing 77 n n O2 C5 7PG sing 78 n n C5 C6 7PG sing 79 n n C5 H51 7PG sing 80 n n C5 H52 7PG sing 81 n n C6 O3 7PG sing 82 n n C6 H61 7PG sing 83 n n C6 H62 7PG sing 84 n n O3 C7 7PG sing 85 n n C7 C8 7PG sing 86 n n C7 H71 7PG sing 87 n n C7 H72 7PG sing 88 n n C8 O4 7PG sing 89 n n C8 H81 7PG sing 90 n n C8 H82 7PG sing 91 n n O4 C9 7PG sing 92 n n C9 C10 7PG sing 93 n n C9 H91 7PG sing 94 n n C9 H92 7PG sing 95 n n C10 O5 7PG sing 96 n n C10 H101 7PG sing 97 n n C10 H102 7PG sing 98 n n O5 C11 7PG sing 99 n n C11 C12 7PG sing 100 n n C11 H111 7PG sing 101 n n C11 H112 7PG sing 102 n n C12 O6 7PG sing 103 n n C12 H121 7PG sing 104 n n C12 H122 7PG sing 105 n n O6 C13 7PG sing 106 n n C13 C14 7PG sing 107 n n C13 H131 7PG sing 108 n n C13 H132 7PG sing 109 n n C14 O7 7PG sing 110 n n C14 H141 7PG sing 111 n n C14 H142 7PG sing 112 n n O7 C15 7PG sing 113 n n C15 C16 7PG sing 114 n n C15 H151 7PG sing 115 n n C15 H152 7PG sing 116 n n C16 O8 7PG sing 117 n n C16 H161 7PG sing 118 n n C16 H162 7PG sing 119 n n O8 C17 7PG sing 120 n n C17 H171 7PG sing 121 n n C17 H172 7PG sing 122 n n C17 H173 7PG sing 123 n n # _atom_sites.entry_id 6SXE _atom_sites.fract_transf_matrix[1][1] 0.009082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009082 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 301 NA NA . C 2 NA A 1 302 302 NA NA . D 2 NA A 1 303 303 NA NA . E 3 2CV A 1 304 501 2CV 2CV . F 4 7PG A 1 305 1001 7PG 12P . G 3 2CV A 1 306 1201 2CV 2CV . H 5 9XY A 1 307 1401 9XY 9XY . I 5 9XY A 1 308 1501 9XY 9XY . J 6 HOH A 1 401 1 HOH HOH . J 6 HOH A 2 402 12 HOH HOH . J 6 HOH A 3 403 38 HOH HOH . J 6 HOH A 4 404 18 HOH HOH . J 6 HOH A 5 405 30 HOH HOH . J 6 HOH A 6 406 62 HOH HOH . J 6 HOH A 7 407 26 HOH HOH . J 6 HOH A 8 408 5 HOH HOH . J 6 HOH A 9 409 35 HOH HOH . J 6 HOH A 10 410 23 HOH HOH . J 6 HOH A 11 411 47 HOH HOH . J 6 HOH A 12 412 29 HOH HOH . J 6 HOH A 13 413 49 HOH HOH . J 6 HOH A 14 414 14 HOH HOH . J 6 HOH A 15 415 34 HOH HOH . J 6 HOH A 16 416 15 HOH HOH . J 6 HOH A 17 417 33 HOH HOH . J 6 HOH A 18 418 11 HOH HOH . J 6 HOH A 19 419 17 HOH HOH . J 6 HOH A 20 420 66 HOH HOH . J 6 HOH A 21 421 68 HOH HOH . J 6 HOH A 22 422 16 HOH HOH . J 6 HOH A 23 423 2 HOH HOH . J 6 HOH A 24 424 41 HOH HOH . J 6 HOH A 25 425 21 HOH HOH . J 6 HOH A 26 426 42 HOH HOH . J 6 HOH A 27 427 46 HOH HOH . J 6 HOH A 28 428 37 HOH HOH . J 6 HOH A 29 429 43 HOH HOH . J 6 HOH A 30 430 19 HOH HOH . J 6 HOH A 31 431 24 HOH HOH . J 6 HOH A 32 432 45 HOH HOH . J 6 HOH A 33 433 64 HOH HOH . J 6 HOH A 34 434 58 HOH HOH . J 6 HOH A 35 435 8 HOH HOH . J 6 HOH A 36 436 10 HOH HOH . J 6 HOH A 37 437 36 HOH HOH . J 6 HOH A 38 438 22 HOH HOH . J 6 HOH A 39 439 9 HOH HOH . J 6 HOH A 40 440 6 HOH HOH . J 6 HOH A 41 441 50 HOH HOH . J 6 HOH A 42 442 3 HOH HOH . J 6 HOH A 43 443 32 HOH HOH . J 6 HOH A 44 444 39 HOH HOH . J 6 HOH A 45 445 28 HOH HOH . J 6 HOH A 46 446 44 HOH HOH . J 6 HOH A 47 447 48 HOH HOH . J 6 HOH A 48 448 7 HOH HOH . J 6 HOH A 49 449 63 HOH HOH . J 6 HOH A 50 450 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OXT 7PG . . . F 4 8.346 -17.952 31.186 1 127.59 ? OXT 7PG 305 A 1 HETATM 2 C C1 7PG . . . F 4 9.556 -18.256 30.498 1 129.08 ? C1 7PG 305 A 1 HETATM 3 C C2 7PG . . . F 4 9.321 -18.614 29.053 1 130.49 ? C2 7PG 305 A 1 HETATM 4 O O1 7PG . . . F 4 10.565 -18.847 28.399 1 131 ? O1 7PG 305 A 1 HETATM 5 C C3 7PG . . . F 4 10.438 -19.4 27.089 1 129.43 ? C3 7PG 305 A 1 HETATM 6 C C4 7PG . . . F 4 11.503 -18.832 26.197 1 126.92 ? C4 7PG 305 A 1 HETATM 7 O O2 7PG . . . F 4 11.402 -19.336 24.872 1 124.26 ? O2 7PG 305 A 1 HETATM 8 C C5 7PG . . . F 4 11.548 -18.325 23.88 1 123.24 ? C5 7PG 305 A 1 HETATM 9 C C6 7PG . . . F 4 11.176 -18.876 22.534 1 121.47 ? C6 7PG 305 A 1 HETATM 10 O O3 7PG . . . F 4 10.55 -17.895 21.703 1 118.3 ? O3 7PG 305 A 1 HETATM 11 C C7 7PG . . . F 4 9.122 -17.974 21.67 1 115.98 ? C7 7PG 305 A 1 HETATM 12 C C8 7PG . . . F 4 8.618 -18.805 20.521 1 114.26 ? C8 7PG 305 A 1 HETATM 13 O O4 7PG . . . F 4 8.6 -20.185 20.877 1 113.85 ? O4 7PG 305 A 1 HETATM 14 C C9 7PG . . . F 4 7.726 -20.974 20.076 1 111.77 ? C9 7PG 305 A 1 HETATM 15 C C10 7PG . . . F 4 8.428 -22.219 19.619 1 109.17 ? C10 7PG 305 A 1 HETATM 16 O O5 7PG . . . F 4 7.642 -22.928 18.666 1 107.04 ? O5 7PG 305 A 1 HETATM 17 C C11 7PG . . . F 4 8.283 -23.103 17.406 1 105.08 ? C11 7PG 305 A 1 HETATM 18 C C12 7PG . . . F 4 7.334 -23.747 16.451 1 105.25 ? C12 7PG 305 A 1 HETATM 19 O O6 7PG . . . F 4 7.838 -23.703 15.121 1 106.14 ? O6 7PG 305 A 1 HETATM 20 C C13 7PG . . . F 4 6.957 -23.064 14.201 1 106.05 ? C13 7PG 305 A 1 HETATM 21 C C14 7PG . . . F 4 7.231 -23.539 12.805 1 106.35 ? C14 7PG 305 A 1 HETATM 22 O O7 7PG . . . F 4 6.791 -22.581 11.835 1 104.38 ? O7 7PG 305 A 1 HETATM 23 C C15 7PG . . . F 4 6.967 -23.022 10.497 1 100.94 ? C15 7PG 305 A 1 HETATM 24 C C16 7PG . . . F 4 5.684 -22.853 9.738 1 99.56 ? C16 7PG 305 A 1 HETATM 25 O O8 7PG . . . F 4 4.973 -24.073 9.525 1 95.3 ? O8 7PG 305 A 1 HETATM 26 C C17 7PG . . . F 4 4.998 -24.528 8.181 1 89.26 ? C17 7PG 305 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #