data_6SXF # _model_server_result.job_id mea4tY0CNk3SdQ4oaADZ0w _model_server_result.datetime_utc '2024-10-12 05:25:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sxf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":303}' # _entry.id 6SXF # _exptl.entry_id 6SXF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SXF _cell.length_a 107.956 _cell.length_b 107.956 _cell.length_c 212.224 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SXF _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,R 1 1,2,3,4 B,J,K,L,M,N,O,P,Q,S 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 107.956 0 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0 -1 0 1 0 0 0 0 1 53.978 53.978 0 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 -53.978 53.978 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E NA NA . A NA 303 1_555 R O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc2 E NA NA . A NA 303 1_555 R O HOH . A HOH 407 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SXF _atom_sites.fract_transf_matrix[1][1] 0.009263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 301 NA NA . D 2 NA A 1 302 302 NA NA . E 2 NA A 1 303 303 NA NA . F 3 2CV A 1 304 501 2CV 2CV . G 4 12P A 1 305 1001 12P 12P . H 3 2CV A 1 306 1201 2CV 2CV . I 5 CTX A 1 307 1301 CTX CTX . J 2 NA B 1 301 301 NA NA . K 2 NA B 1 302 302 NA NA . L 2 NA B 1 303 303 NA NA . M 3 2CV B 1 304 501 2CV 2CV . N 4 12P B 1 305 1001 12P 12P . O 3 2CV B 1 306 1201 2CV 2CV . P 5 CTX B 1 307 1401 CTX CTX . Q 5 CTX B 1 308 1501 CTX CTX . R 6 HOH A 1 401 111 HOH HOH . R 6 HOH A 2 402 45 HOH HOH . R 6 HOH A 3 403 115 HOH HOH . R 6 HOH A 4 404 46 HOH HOH . R 6 HOH A 5 405 136 HOH HOH . R 6 HOH A 6 406 88 HOH HOH . R 6 HOH A 7 407 16 HOH HOH . R 6 HOH A 8 408 14 HOH HOH . R 6 HOH A 9 409 123 HOH HOH . R 6 HOH A 10 410 5 HOH HOH . R 6 HOH A 11 411 51 HOH HOH . R 6 HOH A 12 412 8 HOH HOH . R 6 HOH A 13 413 63 HOH HOH . R 6 HOH A 14 414 12 HOH HOH . R 6 HOH A 15 415 67 HOH HOH . R 6 HOH A 16 416 44 HOH HOH . R 6 HOH A 17 417 116 HOH HOH . R 6 HOH A 18 418 4 HOH HOH . R 6 HOH A 19 419 94 HOH HOH . R 6 HOH A 20 420 113 HOH HOH . R 6 HOH A 21 421 118 HOH HOH . R 6 HOH A 22 422 103 HOH HOH . R 6 HOH A 23 423 87 HOH HOH . R 6 HOH A 24 424 32 HOH HOH . R 6 HOH A 25 425 13 HOH HOH . R 6 HOH A 26 426 74 HOH HOH . R 6 HOH A 27 427 77 HOH HOH . R 6 HOH A 28 428 129 HOH HOH . R 6 HOH A 29 429 131 HOH HOH . R 6 HOH A 30 430 68 HOH HOH . R 6 HOH A 31 431 30 HOH HOH . R 6 HOH A 32 432 7 HOH HOH . R 6 HOH A 33 433 114 HOH HOH . R 6 HOH A 34 434 120 HOH HOH . R 6 HOH A 35 435 117 HOH HOH . R 6 HOH A 36 436 22 HOH HOH . R 6 HOH A 37 437 28 HOH HOH . R 6 HOH A 38 438 79 HOH HOH . R 6 HOH A 39 439 71 HOH HOH . R 6 HOH A 40 440 132 HOH HOH . R 6 HOH A 41 441 104 HOH HOH . R 6 HOH A 42 442 20 HOH HOH . R 6 HOH A 43 443 38 HOH HOH . R 6 HOH A 44 444 35 HOH HOH . R 6 HOH A 45 445 78 HOH HOH . R 6 HOH A 46 446 121 HOH HOH . R 6 HOH A 47 447 100 HOH HOH . R 6 HOH A 48 448 60 HOH HOH . R 6 HOH A 49 449 95 HOH HOH . R 6 HOH A 50 450 76 HOH HOH . R 6 HOH A 51 451 18 HOH HOH . R 6 HOH A 52 452 90 HOH HOH . R 6 HOH A 53 453 69 HOH HOH . R 6 HOH A 54 454 97 HOH HOH . R 6 HOH A 55 455 80 HOH HOH . R 6 HOH A 56 456 73 HOH HOH . R 6 HOH A 57 457 11 HOH HOH . R 6 HOH A 58 458 42 HOH HOH . R 6 HOH A 59 459 62 HOH HOH . R 6 HOH A 60 460 75 HOH HOH . R 6 HOH A 61 461 84 HOH HOH . R 6 HOH A 62 462 70 HOH HOH . R 6 HOH A 63 463 9 HOH HOH . R 6 HOH A 64 464 81 HOH HOH . S 6 HOH B 1 401 99 HOH HOH . S 6 HOH B 2 402 72 HOH HOH . S 6 HOH B 3 403 19 HOH HOH . S 6 HOH B 4 404 59 HOH HOH . S 6 HOH B 5 405 1 HOH HOH . S 6 HOH B 6 406 47 HOH HOH . S 6 HOH B 7 407 2 HOH HOH . S 6 HOH B 8 408 134 HOH HOH . S 6 HOH B 9 409 55 HOH HOH . S 6 HOH B 10 410 93 HOH HOH . S 6 HOH B 11 411 48 HOH HOH . S 6 HOH B 12 412 124 HOH HOH . S 6 HOH B 13 413 27 HOH HOH . S 6 HOH B 14 414 119 HOH HOH . S 6 HOH B 15 415 56 HOH HOH . S 6 HOH B 16 416 92 HOH HOH . S 6 HOH B 17 417 6 HOH HOH . S 6 HOH B 18 418 105 HOH HOH . S 6 HOH B 19 419 17 HOH HOH . S 6 HOH B 20 420 101 HOH HOH . S 6 HOH B 21 421 3 HOH HOH . S 6 HOH B 22 422 10 HOH HOH . S 6 HOH B 23 423 128 HOH HOH . S 6 HOH B 24 424 31 HOH HOH . S 6 HOH B 25 425 65 HOH HOH . S 6 HOH B 26 426 15 HOH HOH . S 6 HOH B 27 427 108 HOH HOH . S 6 HOH B 28 428 24 HOH HOH . S 6 HOH B 29 429 107 HOH HOH . S 6 HOH B 30 430 57 HOH HOH . S 6 HOH B 31 431 66 HOH HOH . S 6 HOH B 32 432 125 HOH HOH . S 6 HOH B 33 433 34 HOH HOH . S 6 HOH B 34 434 85 HOH HOH . S 6 HOH B 35 435 102 HOH HOH . S 6 HOH B 36 436 112 HOH HOH . S 6 HOH B 37 437 98 HOH HOH . S 6 HOH B 38 438 133 HOH HOH . S 6 HOH B 39 439 37 HOH HOH . S 6 HOH B 40 440 126 HOH HOH . S 6 HOH B 41 441 61 HOH HOH . S 6 HOH B 42 442 52 HOH HOH . S 6 HOH B 43 443 127 HOH HOH . S 6 HOH B 44 444 135 HOH HOH . S 6 HOH B 45 445 36 HOH HOH . S 6 HOH B 46 446 39 HOH HOH . S 6 HOH B 47 447 86 HOH HOH . S 6 HOH B 48 448 96 HOH HOH . S 6 HOH B 49 449 83 HOH HOH . S 6 HOH B 50 450 50 HOH HOH . S 6 HOH B 51 451 29 HOH HOH . S 6 HOH B 52 452 25 HOH HOH . S 6 HOH B 53 453 58 HOH HOH . S 6 HOH B 54 454 64 HOH HOH . S 6 HOH B 55 455 106 HOH HOH . S 6 HOH B 56 456 54 HOH HOH . S 6 HOH B 57 457 41 HOH HOH . S 6 HOH B 58 458 26 HOH HOH . S 6 HOH B 59 459 82 HOH HOH . S 6 HOH B 60 460 130 HOH HOH . S 6 HOH B 61 461 109 HOH HOH . S 6 HOH B 62 462 40 HOH HOH . S 6 HOH B 63 463 122 HOH HOH . S 6 HOH B 64 464 43 HOH HOH . S 6 HOH B 65 465 33 HOH HOH . S 6 HOH B 66 466 49 HOH HOH . S 6 HOH B 67 467 23 HOH HOH . S 6 HOH B 68 468 21 HOH HOH . S 6 HOH B 69 469 89 HOH HOH . S 6 HOH B 70 470 53 HOH HOH . S 6 HOH B 71 471 91 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 2 _atom_site.Cartn_x 0 _atom_site.Cartn_y 53.977 _atom_site.Cartn_z 39.619 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 90.02 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #