data_6SXJ # _model_server_result.job_id 0son302lpi9TWt98963OSg _model_server_result.datetime_utc '2024-11-22 16:53:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sxj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6SXJ # _exptl.entry_id 6SXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SXJ _cell.length_a 103.971 _cell.length_b 103.971 _cell.length_c 61.019 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall 'I 4' _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6SXJ _atom_sites.fract_transf_matrix[1][1] 0.009618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016388 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 3 HOH A 1 501 1 HOH HOH . C 3 HOH A 2 502 6 HOH HOH . C 3 HOH A 3 503 11 HOH HOH . C 3 HOH A 4 504 7 HOH HOH . C 3 HOH A 5 505 9 HOH HOH . C 3 HOH A 6 506 2 HOH HOH . C 3 HOH A 7 507 13 HOH HOH . C 3 HOH A 8 508 10 HOH HOH . C 3 HOH A 9 509 4 HOH HOH . C 3 HOH A 10 510 3 HOH HOH . C 3 HOH A 11 511 14 HOH HOH . C 3 HOH A 12 512 5 HOH HOH . C 3 HOH A 13 513 8 HOH HOH . C 3 HOH A 14 514 16 HOH HOH . C 3 HOH A 15 515 12 HOH HOH . C 3 HOH A 16 516 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 0.57 -20.172 -35.687 1 79.28 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 1.428 -21.12 -35.148 1 81.74 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 -0.479 -19.837 -34.602 1 76.32 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 0.095 -19.728 -33.36 1 84.46 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 -1.11 -18.531 -35.112 1 77.88 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 -1.817 -17.987 -34.037 1 70.95 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . B 2 0.116 -20.49 -36.484 1 95.13 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . B 2 1.03 -19.359 -35.95 1 95.13 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . B 2 1.026 -21.866 -35.214 1 98.08 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . B 2 -1.148 -20.532 -34.505 1 91.59 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . B 2 0.439 -20.489 -33.176 1 101.35 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . B 2 -1.668 -18.728 -35.881 1 93.46 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . B 2 -0.409 -17.95 -35.447 1 93.46 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . B 2 -2.33 -18.604 -33.761 1 85.14 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 114 _model_server_stats.parse_time_ms 98 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 14 #