data_6SYE # _model_server_result.job_id AW66Hw7FTOrUVlkiKjWISA _model_server_result.datetime_utc '2024-11-02 03:29:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 6SYE # _exptl.entry_id 6SYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 669.961 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'bromophenol blue' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SYE _cell.length_a 30.206 _cell.length_b 55.235 _cell.length_c 71.576 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A C SER 100 A SER 100 1_555 A N IAS 101 A IAS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A CG IAS 101 A IAS 101 1_555 A N GLY 102 A GLY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C19 H10 Br4 O5 S' _chem_comp.formula_weight 669.961 _chem_comp.id LYE _chem_comp.mon_nstd_flag . _chem_comp.name 'bromophenol blue' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR3 C13 LYE sing 209 n n O12 C11 LYE doub 210 n n C13 C11 LYE sing 211 n n C13 C14 LYE doub 212 n n C11 C10 LYE sing 213 n n C14 C08 LYE sing 214 n n C02 C01 LYE doub 215 n y C02 C03 LYE sing 216 n y C01 C06 LYE sing 217 n y C03 C04 LYE doub 218 n y C06 C05 LYE doub 219 n y O27 S26 LYE doub 220 n n C10 BR4 LYE sing 221 n n C10 C09 LYE doub 222 n n C04 C05 LYE sing 223 n y C04 S26 LYE sing 224 n n C08 C09 LYE sing 225 n n C08 C07 LYE doub 226 n n C05 C07 LYE sing 227 n n O28 S26 LYE doub 228 n n S26 O29 LYE sing 229 n n C07 C17 LYE sing 230 n n C17 C18 LYE doub 231 n y C17 C22 LYE sing 232 n y C18 C19 LYE sing 233 n y C22 C21 LYE doub 234 n y C19 C20 LYE doub 235 n y C19 BR1 LYE sing 236 n n C21 C20 LYE sing 237 n y C21 BR2 LYE sing 238 n n C20 O24 LYE sing 239 n n C02 H021 LYE sing 240 n n C01 H011 LYE sing 241 n n C03 H031 LYE sing 242 n n C06 H061 LYE sing 243 n n C09 H091 LYE sing 244 n n C14 H141 LYE sing 245 n n C18 H181 LYE sing 246 n n C22 H221 LYE sing 247 n n O24 H241 LYE sing 248 n n O29 H3 LYE sing 249 n n # _atom_sites.entry_id 6SYE _atom_sites.fract_transf_matrix[1][1] 0.033106 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 201 CL CL . C 3 LYE A 1 202 202 LYE LYE . D 3 LYE A 1 203 203 LYE LYE . E 4 HOH A 1 301 159 HOH HOH . E 4 HOH A 2 302 10 HOH HOH . E 4 HOH A 3 303 56 HOH HOH . E 4 HOH A 4 304 119 HOH HOH . E 4 HOH A 5 305 3 HOH HOH . E 4 HOH A 6 306 6 HOH HOH . E 4 HOH A 7 307 14 HOH HOH . E 4 HOH A 8 308 9 HOH HOH . E 4 HOH A 9 309 30 HOH HOH . E 4 HOH A 10 310 7 HOH HOH . E 4 HOH A 11 311 8 HOH HOH . E 4 HOH A 12 312 2 HOH HOH . E 4 HOH A 13 313 136 HOH HOH . E 4 HOH A 14 314 22 HOH HOH . E 4 HOH A 15 315 103 HOH HOH . E 4 HOH A 16 316 4 HOH HOH . E 4 HOH A 17 317 1 HOH HOH . E 4 HOH A 18 318 16 HOH HOH . E 4 HOH A 19 319 5 HOH HOH . E 4 HOH A 20 320 13 HOH HOH . E 4 HOH A 21 321 17 HOH HOH . E 4 HOH A 22 322 149 HOH HOH . E 4 HOH A 23 323 12 HOH HOH . E 4 HOH A 24 324 29 HOH HOH . E 4 HOH A 25 325 127 HOH HOH . E 4 HOH A 26 326 33 HOH HOH . E 4 HOH A 27 327 11 HOH HOH . E 4 HOH A 28 328 24 HOH HOH . E 4 HOH A 29 329 27 HOH HOH . E 4 HOH A 30 330 26 HOH HOH . E 4 HOH A 31 331 38 HOH HOH . E 4 HOH A 32 332 36 HOH HOH . E 4 HOH A 33 333 122 HOH HOH . E 4 HOH A 34 334 25 HOH HOH . E 4 HOH A 35 335 31 HOH HOH . E 4 HOH A 36 336 41 HOH HOH . E 4 HOH A 37 337 47 HOH HOH . E 4 HOH A 38 338 34 HOH HOH . E 4 HOH A 39 339 21 HOH HOH . E 4 HOH A 40 340 79 HOH HOH . E 4 HOH A 41 341 54 HOH HOH . E 4 HOH A 42 342 23 HOH HOH . E 4 HOH A 43 343 39 HOH HOH . E 4 HOH A 44 344 18 HOH HOH . E 4 HOH A 45 345 42 HOH HOH . E 4 HOH A 46 346 40 HOH HOH . E 4 HOH A 47 347 35 HOH HOH . E 4 HOH A 48 348 28 HOH HOH . E 4 HOH A 49 349 55 HOH HOH . E 4 HOH A 50 350 44 HOH HOH . E 4 HOH A 51 351 45 HOH HOH . E 4 HOH A 52 352 67 HOH HOH . E 4 HOH A 53 353 37 HOH HOH . E 4 HOH A 54 354 43 HOH HOH . E 4 HOH A 55 355 116 HOH HOH . E 4 HOH A 56 356 50 HOH HOH . E 4 HOH A 57 357 32 HOH HOH . E 4 HOH A 58 358 20 HOH HOH . E 4 HOH A 59 359 19 HOH HOH . E 4 HOH A 60 360 146 HOH HOH . E 4 HOH A 61 361 62 HOH HOH . E 4 HOH A 62 362 144 HOH HOH . E 4 HOH A 63 363 156 HOH HOH . E 4 HOH A 64 364 53 HOH HOH . E 4 HOH A 65 365 49 HOH HOH . E 4 HOH A 66 366 60 HOH HOH . E 4 HOH A 67 367 46 HOH HOH . E 4 HOH A 68 368 61 HOH HOH . E 4 HOH A 69 369 64 HOH HOH . E 4 HOH A 70 370 52 HOH HOH . E 4 HOH A 71 371 70 HOH HOH . E 4 HOH A 72 372 118 HOH HOH . E 4 HOH A 73 373 57 HOH HOH . E 4 HOH A 74 374 58 HOH HOH . E 4 HOH A 75 375 59 HOH HOH . E 4 HOH A 76 376 102 HOH HOH . E 4 HOH A 77 377 131 HOH HOH . E 4 HOH A 78 378 109 HOH HOH . E 4 HOH A 79 379 75 HOH HOH . E 4 HOH A 80 380 132 HOH HOH . E 4 HOH A 81 381 138 HOH HOH . E 4 HOH A 82 382 71 HOH HOH . E 4 HOH A 83 383 66 HOH HOH . E 4 HOH A 84 384 68 HOH HOH . E 4 HOH A 85 385 160 HOH HOH . E 4 HOH A 86 386 51 HOH HOH . E 4 HOH A 87 387 72 HOH HOH . E 4 HOH A 88 388 69 HOH HOH . E 4 HOH A 89 389 76 HOH HOH . E 4 HOH A 90 390 74 HOH HOH . E 4 HOH A 91 391 150 HOH HOH . E 4 HOH A 92 392 65 HOH HOH . E 4 HOH A 93 393 77 HOH HOH . E 4 HOH A 94 394 15 HOH HOH . E 4 HOH A 95 395 85 HOH HOH . E 4 HOH A 96 396 84 HOH HOH . E 4 HOH A 97 397 80 HOH HOH . E 4 HOH A 98 398 87 HOH HOH . E 4 HOH A 99 399 78 HOH HOH . E 4 HOH A 100 400 82 HOH HOH . E 4 HOH A 101 401 63 HOH HOH . E 4 HOH A 102 402 86 HOH HOH . E 4 HOH A 103 403 115 HOH HOH . E 4 HOH A 104 404 126 HOH HOH . E 4 HOH A 105 405 128 HOH HOH . E 4 HOH A 106 406 89 HOH HOH . E 4 HOH A 107 407 88 HOH HOH . E 4 HOH A 108 408 151 HOH HOH . E 4 HOH A 109 409 73 HOH HOH . E 4 HOH A 110 410 145 HOH HOH . E 4 HOH A 111 411 81 HOH HOH . E 4 HOH A 112 412 147 HOH HOH . E 4 HOH A 113 413 114 HOH HOH . E 4 HOH A 114 414 92 HOH HOH . E 4 HOH A 115 415 124 HOH HOH . E 4 HOH A 116 416 139 HOH HOH . E 4 HOH A 117 417 133 HOH HOH . E 4 HOH A 118 418 90 HOH HOH . E 4 HOH A 119 419 97 HOH HOH . E 4 HOH A 120 420 91 HOH HOH . E 4 HOH A 121 421 155 HOH HOH . E 4 HOH A 122 422 148 HOH HOH . E 4 HOH A 123 423 120 HOH HOH . E 4 HOH A 124 424 104 HOH HOH . E 4 HOH A 125 425 123 HOH HOH . E 4 HOH A 126 426 129 HOH HOH . E 4 HOH A 127 427 106 HOH HOH . E 4 HOH A 128 428 107 HOH HOH . E 4 HOH A 129 429 141 HOH HOH . E 4 HOH A 130 430 117 HOH HOH . E 4 HOH A 131 431 154 HOH HOH . E 4 HOH A 132 432 94 HOH HOH . E 4 HOH A 133 433 108 HOH HOH . E 4 HOH A 134 434 48 HOH HOH . E 4 HOH A 135 435 95 HOH HOH . E 4 HOH A 136 436 93 HOH HOH . E 4 HOH A 137 437 112 HOH HOH . E 4 HOH A 138 438 83 HOH HOH . E 4 HOH A 139 439 125 HOH HOH . E 4 HOH A 140 440 143 HOH HOH . E 4 HOH A 141 441 152 HOH HOH . E 4 HOH A 142 442 158 HOH HOH . E 4 HOH A 143 443 96 HOH HOH . E 4 HOH A 144 444 98 HOH HOH . E 4 HOH A 145 445 121 HOH HOH . E 4 HOH A 146 446 99 HOH HOH . E 4 HOH A 147 447 130 HOH HOH . E 4 HOH A 148 448 111 HOH HOH . E 4 HOH A 149 449 101 HOH HOH . E 4 HOH A 150 450 100 HOH HOH . E 4 HOH A 151 451 137 HOH HOH . E 4 HOH A 152 452 110 HOH HOH . E 4 HOH A 153 453 105 HOH HOH . E 4 HOH A 154 454 135 HOH HOH . E 4 HOH A 155 455 134 HOH HOH . E 4 HOH A 156 456 113 HOH HOH . E 4 HOH A 157 457 142 HOH HOH . E 4 HOH A 158 458 157 HOH HOH . E 4 HOH A 159 459 153 HOH HOH . E 4 HOH A 160 460 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 LYE . . . D 3 2.913 -15.54 36.185 1 11.84 ? C02 LYE 203 A 1 HETATM 2 C C04 LYE . . . D 3 3.389 -15.197 33.836 1 10.29 ? C04 LYE 203 A 1 HETATM 3 C C07 LYE . . . D 3 5.305 -13.628 33.155 1 9.89 ? C07 LYE 203 A 1 HETATM 4 C C08 LYE . . . D 3 5.22 -12.239 33.141 1 10.57 ? C08 LYE 203 A 1 HETATM 5 C C01 LYE . . . D 3 3.951 -14.694 36.517 1 11.86 ? C01 LYE 203 A 1 HETATM 6 C C03 LYE . . . D 3 2.623 -15.783 34.852 1 11.25 ? C03 LYE 203 A 1 HETATM 7 C C05 LYE . . . D 3 4.453 -14.342 34.176 1 10.03 ? C05 LYE 203 A 1 HETATM 8 C C06 LYE . . . D 3 4.711 -14.095 35.524 1 11.16 ? C06 LYE 203 A 1 HETATM 9 C C09 LYE . . . D 3 4.025 -11.622 33.534 1 10.86 ? C09 LYE 203 A 1 HETATM 10 C C10 LYE . . . D 3 3.891 -10.229 33.528 1 11.9 ? C10 LYE 203 A 1 HETATM 11 C C11 LYE . . . D 3 4.959 -9.411 33.169 1 12.55 ? C11 LYE 203 A 1 HETATM 12 C C13 LYE . . . D 3 6.17 -10.011 32.803 1 12.64 ? C13 LYE 203 A 1 HETATM 13 C C14 LYE . . . D 3 6.297 -11.407 32.793 1 11.7 ? C14 LYE 203 A 1 HETATM 14 C C17 LYE . . . D 3 6.244 -14.391 32.337 1 10.4 ? C17 LYE 203 A 1 HETATM 15 C C18 LYE . . . D 3 6.664 -15.656 32.763 1 11.11 ? C18 LYE 203 A 1 HETATM 16 C C19 LYE . . . D 3 7.554 -16.402 31.99 1 12.28 ? C19 LYE 203 A 1 HETATM 17 C C20 LYE . . . D 3 8.017 -15.906 30.764 1 11.99 ? C20 LYE 203 A 1 HETATM 18 C C21 LYE . . . D 3 7.582 -14.646 30.33 1 11.81 ? C21 LYE 203 A 1 HETATM 19 C C22 LYE . . . D 3 6.698 -13.906 31.107 1 11.01 ? C22 LYE 203 A 1 HETATM 20 O O12 LYE . . . D 3 4.834 -8.104 33.184 1 13.73 ? O12 LYE 203 A 1 HETATM 21 O O24 LYE . . . D 3 8.852 -16.605 30.035 1 13.58 ? O24 LYE 203 A 1 HETATM 22 O O27 LYE . . . D 3 2.736 -14.244 31.545 1 9.42 ? O27 LYE 203 A 1 HETATM 23 O O28 LYE . . . D 3 4.034 -16.279 31.549 1 10.1 ? O28 LYE 203 A 1 HETATM 24 O O29 LYE . . . D 3 1.696 -16.317 32.224 1 10.07 ? O29 LYE 203 A 1 HETATM 25 S S26 LYE . . . D 3 2.94 -15.542 32.152 1 9.31 ? S26 LYE 203 A 1 HETATM 26 BR BR3 LYE . . . D 3 7.636 -8.932 32.324 1 15.27 ? BR3 LYE 203 A 1 HETATM 27 BR BR4 LYE . . . D 3 2.25 -9.474 34.028 1 14.01 ? BR4 LYE 203 A 1 HETATM 28 BR BR2 LYE . . . D 3 8.183 -13.942 28.693 1 13.7 ? BR2 LYE 203 A 1 HETATM 29 BR BR1 LYE . . . D 3 8.121 -18.084 32.614 1 13.9 ? BR1 LYE 203 A 1 HETATM 30 H H021 LYE . . . D 3 2.323 -16.016 36.969 1 14.22 ? H021 LYE 203 A 1 HETATM 31 H H011 LYE . . . D 3 4.175 -14.496 37.565 1 14.25 ? H011 LYE 203 A 1 HETATM 32 H H031 LYE . . . D 3 1.791 -16.437 34.591 1 13.51 ? H031 LYE 203 A 1 HETATM 33 H H061 LYE . . . D 3 5.522 -13.421 35.801 1 13.41 ? H061 LYE 203 A 1 HETATM 34 H H091 LYE . . . D 3 3.184 -12.239 33.851 1 13.05 ? H091 LYE 203 A 1 HETATM 35 H H141 LYE . . . D 3 7.249 -11.855 32.51 1 14.06 ? H141 LYE 203 A 1 HETATM 36 H H181 LYE . . . D 3 6.295 -16.061 33.705 1 13.34 ? H181 LYE 203 A 1 HETATM 37 H H221 LYE . . . D 3 6.355 -12.934 30.753 1 13.22 ? H221 LYE 203 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #