data_6SYL # _model_server_result.job_id NgSMTY0j-objkAkrTVemPQ _model_server_result.datetime_utc '2025-01-17 06:40:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6syl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 6SYL # _exptl.entry_id 6SYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 222.262 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'butoxy(hexyl)phosphinic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.89 _cell.angle_gamma 90 _cell.entry_id 6SYL _cell.length_a 183.624 _cell.length_b 51.316 _cell.length_c 70.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 211 A SER 192 1_555 C P1 H7N . A H7N 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale2 B OG SER 211 B SER 192 1_555 D P1 H7N . B H7N 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? # _chem_comp.formula 'C10 H23 O3 P' _chem_comp.formula_weight 222.262 _chem_comp.id H7N _chem_comp.mon_nstd_flag . _chem_comp.name 'butoxy(hexyl)phosphinic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 H7N sing 129 n n C9 C8 H7N sing 130 n n C8 C7 H7N sing 131 n n C7 C6 H7N sing 132 n n C6 C5 H7N sing 133 n n C5 P1 H7N sing 134 n n O3 P1 H7N doub 135 n n P1 O4 H7N sing 136 n n O4 C11 H7N sing 137 n n C11 C12 H7N sing 138 n n C12 C13 H7N sing 139 n n C13 C1 H7N sing 140 n n C1 H1 H7N sing 141 n n C1 H2 H7N sing 142 n n C1 H3 H7N sing 143 n n C5 H4 H7N sing 144 n n C5 H5 H7N sing 145 n n C6 H7 H7N sing 146 n n C6 H8 H7N sing 147 n n C7 H9 H7N sing 148 n n C7 H10 H7N sing 149 n n C8 H11 H7N sing 150 n n C8 H12 H7N sing 151 n n C9 H13 H7N sing 152 n n C9 H14 H7N sing 153 n n C10 H15 H7N sing 154 n n C10 H16 H7N sing 155 n n C10 H17 H7N sing 156 n n C11 H18 H7N sing 157 n n C11 H19 H7N sing 158 n n C12 H20 H7N sing 159 n n C12 H21 H7N sing 160 n n C13 H22 H7N sing 161 n n C13 H23 H7N sing 162 n n P1 O1 H7N sing 163 n n O1 H6 H7N sing 164 n n # _atom_sites.entry_id 6SYL _atom_sites.fract_transf_matrix[1][1] 0.005446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 H7N A 1 401 192 H7N 127 . D 2 H7N B 1 401 192 H7N 127 . E 3 HOH A 1 501 8 HOH HOH . E 3 HOH A 2 502 6 HOH HOH . E 3 HOH A 3 503 20 HOH HOH . E 3 HOH A 4 504 9 HOH HOH . E 3 HOH A 5 505 5 HOH HOH . E 3 HOH A 6 506 13 HOH HOH . E 3 HOH A 7 507 21 HOH HOH . E 3 HOH A 8 508 22 HOH HOH . E 3 HOH A 9 509 23 HOH HOH . E 3 HOH A 10 510 17 HOH HOH . F 3 HOH B 1 501 11 HOH HOH . F 3 HOH B 2 502 10 HOH HOH . F 3 HOH B 3 503 7 HOH HOH . F 3 HOH B 4 504 12 HOH HOH . F 3 HOH B 5 505 4 HOH HOH . F 3 HOH B 6 506 24 HOH HOH . F 3 HOH B 7 507 15 HOH HOH . F 3 HOH B 8 508 3 HOH HOH . F 3 HOH B 9 509 2 HOH HOH . F 3 HOH B 10 510 14 HOH HOH . F 3 HOH B 11 511 18 HOH HOH . F 3 HOH B 12 512 16 HOH HOH . F 3 HOH B 13 513 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H7N . . . D 2 19.407 -8.141 25.67 1 31.84 ? C1 H7N 401 B 1 HETATM 2 P P1 H7N . . . D 2 17.059 -4.586 29.661 1 29.04 ? P1 H7N 401 B 1 HETATM 3 C C5 H7N . . . D 2 15.307 -4.416 29.971 1 30.04 ? C5 H7N 401 B 1 HETATM 4 O O3 H7N . . . D 2 17.905 -4.973 30.842 1 29.18 ? O3 H7N 401 B 1 HETATM 5 C C6 H7N . . . D 2 14.439 -5.648 30.132 1 31.38 ? C6 H7N 401 B 1 HETATM 6 C C7 H7N . . . D 2 14.741 -6.472 31.377 1 32.81 ? C7 H7N 401 B 1 HETATM 7 O O4 H7N . . . D 2 17.423 -5.512 28.386 1 29.95 ? O4 H7N 401 B 1 HETATM 8 C C8 H7N . . . D 2 14.3 -7.914 31.145 1 34.15 ? C8 H7N 401 B 1 HETATM 9 C C9 H7N . . . D 2 15.42 -8.773 30.562 1 35.25 ? C9 H7N 401 B 1 HETATM 10 C C10 H7N . . . D 2 15.496 -10.066 31.351 1 35.96 ? C10 H7N 401 B 1 HETATM 11 C C11 H7N . . . D 2 18.836 -5.554 28.289 1 30.77 ? C11 H7N 401 B 1 HETATM 12 C C12 H7N . . . D 2 19.451 -6.078 26.995 1 31.25 ? C12 H7N 401 B 1 HETATM 13 C C13 H7N . . . D 2 19.536 -7.59 27.097 1 31.69 ? C13 H7N 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 13 #