data_6SYN # _model_server_result.job_id igzqbShaT0aWOQZr_XTbeA _model_server_result.datetime_utc '2024-11-02 10:35:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6syn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6SYN # _exptl.entry_id 6SYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.416 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2S)-2-carboxy-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SYN _cell.length_a 40.86 _cell.length_b 104.95 _cell.length_c 110.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 252 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 306 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id CB9 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CB9 _struct_conn.ptnr2_auth_seq_id 603 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.335 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H20 N2 O6 S' _chem_comp.formula_weight 380.416 _chem_comp.id CB9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2S)-2-carboxy-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bound form of Carbenicillin' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O CB9 doub 76 n n C CA CB9 sing 77 n n N CA CB9 sing 78 n n N CAT CB9 sing 79 n n CA CB CB9 sing 80 n n CB NAP CB9 sing 81 n n CB SAQ CB9 sing 82 n n CAA CAZ CB9 sing 83 n n CAB CAZ CB9 sing 84 n n OAD CAR CB9 doub 85 n n OAE CAS CB9 doub 86 n n OAF CAT CB9 doub 87 n n OAG CAR CB9 sing 88 n n OAH CAS CB9 sing 89 n n CAJ CAK CB9 doub 90 n y CAJ CAL CB9 sing 91 n y CAK CAM CB9 sing 92 n y CAL CAN CB9 doub 93 n y CAM CAU CB9 doub 94 n y CAN CAU CB9 sing 95 n y NAP CAX CB9 sing 96 n n SAQ CAZ CB9 sing 97 n n CAR CAX CB9 sing 98 n n CAS CAY CB9 sing 99 n n CAT CAY CB9 sing 100 n n CAU CAY CB9 sing 101 n n CAX CAZ CB9 sing 102 n n C H CB9 sing 103 n n N HN CB9 sing 104 n n CA HA CB9 sing 105 n n CB HB CB9 sing 106 n n CAA HAA CB9 sing 107 n n CAA HAAA CB9 sing 108 n n CAA HAAB CB9 sing 109 n n CAB HAB CB9 sing 110 n n CAB HABA CB9 sing 111 n n CAB HABB CB9 sing 112 n n OAG HOAG CB9 sing 113 n n OAH HOAH CB9 sing 114 n n CAJ HAJ CB9 sing 115 n n CAK HAK CB9 sing 116 n n CAL HAL CB9 sing 117 n n CAM HAM CB9 sing 118 n n CAN HAN CB9 sing 119 n n NAP HNAP CB9 sing 120 n n CAX HAX CB9 sing 121 n n CAY HAY CB9 sing 122 n n # _atom_sites.entry_id 6SYN _atom_sites.fract_transf_matrix[1][1] 0.024474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 601 601 ACT ACT . C 2 ACT A 1 602 901 ACT ACT . D 3 CB9 A 1 603 306 CB9 CRB . E 4 HOH A 1 701 97 HOH HOH . E 4 HOH A 2 702 24 HOH HOH . E 4 HOH A 3 703 103 HOH HOH . E 4 HOH A 4 704 94 HOH HOH . E 4 HOH A 5 705 83 HOH HOH . E 4 HOH A 6 706 139 HOH HOH . E 4 HOH A 7 707 124 HOH HOH . E 4 HOH A 8 708 34 HOH HOH . E 4 HOH A 9 709 32 HOH HOH . E 4 HOH A 10 710 78 HOH HOH . E 4 HOH A 11 711 113 HOH HOH . E 4 HOH A 12 712 109 HOH HOH . E 4 HOH A 13 713 129 HOH HOH . E 4 HOH A 14 714 8 HOH HOH . E 4 HOH A 15 715 5 HOH HOH . E 4 HOH A 16 716 19 HOH HOH . E 4 HOH A 17 717 119 HOH HOH . E 4 HOH A 18 718 80 HOH HOH . E 4 HOH A 19 719 41 HOH HOH . E 4 HOH A 20 720 11 HOH HOH . E 4 HOH A 21 721 35 HOH HOH . E 4 HOH A 22 722 56 HOH HOH . E 4 HOH A 23 723 141 HOH HOH . E 4 HOH A 24 724 135 HOH HOH . E 4 HOH A 25 725 20 HOH HOH . E 4 HOH A 26 726 110 HOH HOH . E 4 HOH A 27 727 137 HOH HOH . E 4 HOH A 28 728 87 HOH HOH . E 4 HOH A 29 729 33 HOH HOH . E 4 HOH A 30 730 36 HOH HOH . E 4 HOH A 31 731 71 HOH HOH . E 4 HOH A 32 732 29 HOH HOH . E 4 HOH A 33 733 108 HOH HOH . E 4 HOH A 34 734 21 HOH HOH . E 4 HOH A 35 735 79 HOH HOH . E 4 HOH A 36 736 134 HOH HOH . E 4 HOH A 37 737 75 HOH HOH . E 4 HOH A 38 738 6 HOH HOH . E 4 HOH A 39 739 123 HOH HOH . E 4 HOH A 40 740 31 HOH HOH . E 4 HOH A 41 741 1 HOH HOH . E 4 HOH A 42 742 82 HOH HOH . E 4 HOH A 43 743 51 HOH HOH . E 4 HOH A 44 744 74 HOH HOH . E 4 HOH A 45 745 93 HOH HOH . E 4 HOH A 46 746 57 HOH HOH . E 4 HOH A 47 747 125 HOH HOH . E 4 HOH A 48 748 40 HOH HOH . E 4 HOH A 49 749 67 HOH HOH . E 4 HOH A 50 750 128 HOH HOH . E 4 HOH A 51 751 126 HOH HOH . E 4 HOH A 52 752 76 HOH HOH . E 4 HOH A 53 753 89 HOH HOH . E 4 HOH A 54 754 14 HOH HOH . E 4 HOH A 55 755 48 HOH HOH . E 4 HOH A 56 756 4 HOH HOH . E 4 HOH A 57 757 15 HOH HOH . E 4 HOH A 58 758 25 HOH HOH . E 4 HOH A 59 759 88 HOH HOH . E 4 HOH A 60 760 115 HOH HOH . E 4 HOH A 61 761 42 HOH HOH . E 4 HOH A 62 762 127 HOH HOH . E 4 HOH A 63 763 118 HOH HOH . E 4 HOH A 64 764 68 HOH HOH . E 4 HOH A 65 765 23 HOH HOH . E 4 HOH A 66 766 47 HOH HOH . E 4 HOH A 67 767 52 HOH HOH . E 4 HOH A 68 768 13 HOH HOH . E 4 HOH A 69 769 50 HOH HOH . E 4 HOH A 70 770 9 HOH HOH . E 4 HOH A 71 771 2 HOH HOH . E 4 HOH A 72 772 116 HOH HOH . E 4 HOH A 73 773 90 HOH HOH . E 4 HOH A 74 774 10 HOH HOH . E 4 HOH A 75 775 38 HOH HOH . E 4 HOH A 76 776 16 HOH HOH . E 4 HOH A 77 777 86 HOH HOH . E 4 HOH A 78 778 92 HOH HOH . E 4 HOH A 79 779 121 HOH HOH . E 4 HOH A 80 780 105 HOH HOH . E 4 HOH A 81 781 27 HOH HOH . E 4 HOH A 82 782 144 HOH HOH . E 4 HOH A 83 783 102 HOH HOH . E 4 HOH A 84 784 98 HOH HOH . E 4 HOH A 85 785 100 HOH HOH . E 4 HOH A 86 786 101 HOH HOH . E 4 HOH A 87 787 81 HOH HOH . E 4 HOH A 88 788 72 HOH HOH . E 4 HOH A 89 789 18 HOH HOH . E 4 HOH A 90 790 133 HOH HOH . E 4 HOH A 91 791 22 HOH HOH . E 4 HOH A 92 792 84 HOH HOH . E 4 HOH A 93 793 65 HOH HOH . E 4 HOH A 94 794 106 HOH HOH . E 4 HOH A 95 795 54 HOH HOH . E 4 HOH A 96 796 95 HOH HOH . E 4 HOH A 97 797 59 HOH HOH . E 4 HOH A 98 798 17 HOH HOH . E 4 HOH A 99 799 46 HOH HOH . E 4 HOH A 100 800 12 HOH HOH . E 4 HOH A 101 801 138 HOH HOH . E 4 HOH A 102 802 120 HOH HOH . E 4 HOH A 103 803 45 HOH HOH . E 4 HOH A 104 804 117 HOH HOH . E 4 HOH A 105 805 66 HOH HOH . E 4 HOH A 106 806 37 HOH HOH . E 4 HOH A 107 807 7 HOH HOH . E 4 HOH A 108 808 3 HOH HOH . E 4 HOH A 109 809 142 HOH HOH . E 4 HOH A 110 810 132 HOH HOH . E 4 HOH A 111 811 30 HOH HOH . E 4 HOH A 112 812 53 HOH HOH . E 4 HOH A 113 813 26 HOH HOH . E 4 HOH A 114 814 69 HOH HOH . E 4 HOH A 115 815 140 HOH HOH . E 4 HOH A 116 816 62 HOH HOH . E 4 HOH A 117 817 130 HOH HOH . E 4 HOH A 118 818 28 HOH HOH . E 4 HOH A 119 819 58 HOH HOH . E 4 HOH A 120 820 85 HOH HOH . E 4 HOH A 121 821 63 HOH HOH . E 4 HOH A 122 822 61 HOH HOH . E 4 HOH A 123 823 77 HOH HOH . E 4 HOH A 124 824 114 HOH HOH . E 4 HOH A 125 825 131 HOH HOH . E 4 HOH A 126 826 91 HOH HOH . E 4 HOH A 127 827 64 HOH HOH . E 4 HOH A 128 828 99 HOH HOH . E 4 HOH A 129 829 43 HOH HOH . E 4 HOH A 130 830 96 HOH HOH . E 4 HOH A 131 831 60 HOH HOH . E 4 HOH A 132 832 104 HOH HOH . E 4 HOH A 133 833 107 HOH HOH . E 4 HOH A 134 834 39 HOH HOH . E 4 HOH A 135 835 136 HOH HOH . E 4 HOH A 136 836 143 HOH HOH . E 4 HOH A 137 837 55 HOH HOH . E 4 HOH A 138 838 49 HOH HOH . E 4 HOH A 139 839 44 HOH HOH . E 4 HOH A 140 840 112 HOH HOH . E 4 HOH A 141 841 73 HOH HOH . E 4 HOH A 142 842 111 HOH HOH . E 4 HOH A 143 843 70 HOH HOH . E 4 HOH A 144 844 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CB9 . . . D 3 -24.397 10.462 31.177 1 18.06 ? C CB9 603 A 1 HETATM 2 N N CB9 . . . D 3 -26.443 11.334 30.013 1 19.93 ? N CB9 603 A 1 HETATM 3 O O CB9 . . . D 3 -24.156 9.637 30.329 1 18.06 ? O CB9 603 A 1 HETATM 4 C CA CB9 . . . D 3 -25.686 11.271 31.266 1 19.2 ? CA CB9 603 A 1 HETATM 5 C CB CB9 . . . D 3 -26.528 10.798 32.486 1 19.31 ? CB CB9 603 A 1 HETATM 6 C CAA CB9 . . . D 3 -29.289 8.553 33.258 1 19.03 ? CAA CB9 603 A 1 HETATM 7 C CAB CB9 . . . D 3 -29.325 8.748 30.771 1 19.1 ? CAB CB9 603 A 1 HETATM 8 O OAD CB9 . . . D 3 -27.527 6.196 31.795 1 19.09 ? OAD CB9 603 A 1 HETATM 9 O OAE CB9 . . . D 3 -28.107 14.262 26.709 1 20.36 ? OAE CB9 603 A 1 HETATM 10 O OAF CB9 . . . D 3 -25.831 13.457 29.642 1 22.06 ? OAF CB9 603 A 1 HETATM 11 O OAG CB9 . . . D 3 -26.13 6.849 33.318 1 18.6 ? OAG CB9 603 A 1 HETATM 12 O OAH CB9 . . . D 3 -26.238 13.251 26.813 1 20.37 ? OAH CB9 603 A 1 HETATM 13 C CAJ CB9 . . . D 3 -30.835 9.862 27.506 1 20.75 ? CAJ CB9 603 A 1 HETATM 14 C CAK CB9 . . . D 3 -31.087 10.839 28.441 1 20.89 ? CAK CB9 603 A 1 HETATM 15 C CAL CB9 . . . D 3 -29.61 9.811 26.884 1 20.63 ? CAL CB9 603 A 1 HETATM 16 C CAM CB9 . . . D 3 -30.107 11.767 28.758 1 20.54 ? CAM CB9 603 A 1 HETATM 17 C CAN CB9 . . . D 3 -28.622 10.735 27.202 1 20.62 ? CAN CB9 603 A 1 HETATM 18 N NAP CB9 . . . D 3 -26.314 9.389 32.845 1 19.14 ? NAP CB9 603 A 1 HETATM 19 S SAQ CB9 . . . D 3 -28.318 10.885 32.166 1 19.72 ? SAQ CB9 603 A 1 HETATM 20 C CAR CB9 . . . D 3 -26.895 7.049 32.394 1 19.11 ? CAR CB9 603 A 1 HETATM 21 C CAS CB9 . . . D 3 -27.348 13.481 27.22 1 20.3 ? CAS CB9 603 A 1 HETATM 22 C CAT CB9 . . . D 3 -26.605 12.525 29.425 1 20.45 ? CAT CB9 603 A 1 HETATM 23 C CAU CB9 . . . D 3 -28.85 11.708 28.17 1 20.56 ? CAU CB9 603 A 1 HETATM 24 C CAX CB9 . . . D 3 -27.071 8.51 31.946 1 19.23 ? CAX CB9 603 A 1 HETATM 25 C CAY CB9 . . . D 3 -27.819 12.778 28.508 1 20.47 ? CAY CB9 603 A 1 HETATM 26 C CAZ CB9 . . . D 3 -28.537 9.05 32.034 1 19.13 ? CAZ CB9 603 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 26 #