data_6SYQ # _model_server_result.job_id Pi4pI0l0FfipJuwKmDzr4Q _model_server_result.datetime_utc '2024-11-14 21:34:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6syq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1505}' # _entry.id 6SYQ # _exptl.entry_id 6SYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SYQ _cell.length_a 100.723 _cell.length_b 135.648 _cell.length_c 238.936 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 GLC GLC C1 O1 . O6 HO6 . sing 2 ? 3 3 2 GLC GLC C1 O1 . O6 HO6 . sing 3 ? 4 2 1 GLC GLC C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C GLC 1 C 1 GLC A 2003 GLC 3 n C GLC 2 C 2 GLC A 2002 GLC 3 n C GLC 3 C 3 GLC A 2001 GLC 4 n D GLC 1 D 1 GLC A 3002 GLC 4 n D GLC 2 D 2 GLC A 3001 GLC 4 n E GLC 1 E 1 GLC B 2002 GLC 4 n E GLC 2 E 2 GLC B 2001 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O6 GLC . C GLC 1 1_555 C C1 GLC . C GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? covale ? covale2 C O6 GLC . C GLC 2 1_555 C C1 GLC . C GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 D O6 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.512 ? covale ? covale4 E O6 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? metalc ? metalc1 A O GLU 440 A GLU 589 1_555 F CA CA . A CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 A OE2 GLU 440 A GLU 589 1_555 F CA CA . A CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc3 A OD1 ASP 446 A ASP 595 1_555 F CA CA . A CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc4 A OD2 ASP 446 A ASP 595 1_555 F CA CA . A CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc5 A O ASN 490 A ASN 639 1_555 F CA CA . A CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 A OD1 ASP 1024 A ASP 1173 1_555 F CA CA . A CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc7 B O GLU 351 B GLU 589 1_555 H CA CA . B CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc8 B OE2 GLU 351 B GLU 589 1_555 H CA CA . B CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc9 B OD2 ASP 357 B ASP 595 1_555 H CA CA . B CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc10 B O ASN 401 B ASN 639 1_555 H CA CA . B CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc11 B OD1 ASP 935 B ASP 1173 1_555 H CA CA . B CA 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 70 n n C1 O1 GLC sing 71 n n C1 O5 GLC sing 72 n n C1 H1 GLC sing 73 n n C2 C3 GLC sing 74 n n C2 O2 GLC sing 75 n n C2 H2 GLC sing 76 n n C3 C4 GLC sing 77 n n C3 O3 GLC sing 78 n n C3 H3 GLC sing 79 n n C4 C5 GLC sing 80 n n C4 O4 GLC sing 81 n n C4 H4 GLC sing 82 n n C5 C6 GLC sing 83 n n C5 O5 GLC sing 84 n n C5 H5 GLC sing 85 n n C6 O6 GLC sing 86 n n C6 H61 GLC sing 87 n n C6 H62 GLC sing 88 n n O1 HO1 GLC sing 89 n n O2 HO2 GLC sing 90 n n O3 HO3 GLC sing 91 n n O4 HO4 GLC sing 92 n n O6 HO6 GLC sing 93 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6SYQ _atom_sites.fract_transf_matrix[1][1] 0.009928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007372 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CA A 1 1501 2000 CA CA . G 6 GLC A 1 1505 3000 GLC GLC . H 5 CA B 1 1501 2000 CA CA . I 6 GLC B 1 1504 3000 GLC GLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . G 6 53.213 100.36 514.409 1 145.49 ? C1 GLC 1505 A 1 HETATM 2 C C2 GLC . . . G 6 53.836 100.563 515.801 1 148.36 ? C2 GLC 1505 A 1 HETATM 3 C C3 GLC . . . G 6 54.799 99.387 516.112 1 145.49 ? C3 GLC 1505 A 1 HETATM 4 C C4 GLC . . . G 6 53.946 98.104 515.996 1 144.52 ? C4 GLC 1505 A 1 HETATM 5 C C5 GLC . . . G 6 53.37 98.02 514.563 1 143.5 ? C5 GLC 1505 A 1 HETATM 6 C C6 GLC . . . G 6 52.61 96.717 514.324 1 140.36 ? C6 GLC 1505 A 1 HETATM 7 O O2 GLC . . . G 6 54.499 101.81 515.841 1 152.75 ? O2 GLC 1505 A 1 HETATM 8 O O3 GLC . . . G 6 55.543 99.528 517.324 1 128.41 ? O3 GLC 1505 A 1 HETATM 9 O O4 GLC . . . G 6 54.646 96.938 516.387 1 143.59 ? O4 GLC 1505 A 1 HETATM 10 O O5 GLC . . . G 6 52.508 99.142 514.341 1 141.4 ? O5 GLC 1505 A 1 HETATM 11 O O6 GLC . . . G 6 52.353 96.517 512.953 1 133.97 ? O6 GLC 1505 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #