data_6SYR # _model_server_result.job_id BJI43ocvVLm4Fpvl3QTvnA _model_server_result.datetime_utc '2024-11-25 00:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6syr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":504}' # _entry.id 6SYR # _exptl.entry_id 6SYR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 75.776 _cell.angle_beta 65.425 _cell.angle_gamma 70.847 _cell.entry_id 6SYR _cell.length_a 43.215 _cell.length_b 44.189 _cell.length_c 50.172 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 250 A LEU 250 1_555 H NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc2 A O ASP 253 A ASP 253 1_555 H NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc3 A O VAL 256 A VAL 256 1_555 H NA NA . A NA 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? metalc ? metalc4 A O HIS 303 A HIS 303 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc5 A O GLU 305 A GLU 305 1_555 C MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc6 C MG MG . A MG 502 1_555 I O HOH . A HOH 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc7 C MG MG . A MG 502 1_555 I O HOH . A HOH 722 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc8 C MG MG . A MG 502 1_555 I O HOH . A HOH 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc9 C MG MG . A MG 502 1_555 I O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc10 H NA NA . A NA 507 1_555 I O HOH . A HOH 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 H NA NA . A NA 507 1_555 I O HOH . A HOH 778 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6SYR _atom_sites.fract_transf_matrix[1][1] 0.02314 _atom_sites.fract_transf_matrix[1][2] -0.008037 _atom_sites.fract_transf_matrix[1][3] -0.009638 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023956 _atom_sites.fract_transf_matrix[2][3] -0.003072 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022096 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GCU A 1 501 1 GCU GCU . C 3 MG A 1 502 1 MG MG . D 4 EDO A 1 503 1 EDO EDO . E 4 EDO A 1 504 2 EDO EDO . F 4 EDO A 1 505 3 EDO EDO . G 4 EDO A 1 506 4 EDO EDO . H 5 NA A 1 507 1 NA NA . I 6 HOH A 1 601 160 HOH HOH . I 6 HOH A 2 602 162 HOH HOH . I 6 HOH A 3 603 186 HOH HOH . I 6 HOH A 4 604 184 HOH HOH . I 6 HOH A 5 605 103 HOH HOH . I 6 HOH A 6 606 182 HOH HOH . I 6 HOH A 7 607 91 HOH HOH . I 6 HOH A 8 608 118 HOH HOH . I 6 HOH A 9 609 97 HOH HOH . I 6 HOH A 10 610 93 HOH HOH . I 6 HOH A 11 611 112 HOH HOH . I 6 HOH A 12 612 200 HOH HOH . I 6 HOH A 13 613 128 HOH HOH . I 6 HOH A 14 614 62 HOH HOH . I 6 HOH A 15 615 126 HOH HOH . I 6 HOH A 16 616 23 HOH HOH . I 6 HOH A 17 617 71 HOH HOH . I 6 HOH A 18 618 197 HOH HOH . I 6 HOH A 19 619 205 HOH HOH . I 6 HOH A 20 620 72 HOH HOH . I 6 HOH A 21 621 226 HOH HOH . I 6 HOH A 22 622 122 HOH HOH . I 6 HOH A 23 623 167 HOH HOH . I 6 HOH A 24 624 74 HOH HOH . I 6 HOH A 25 625 120 HOH HOH . I 6 HOH A 26 626 225 HOH HOH . I 6 HOH A 27 627 85 HOH HOH . I 6 HOH A 28 628 12 HOH HOH . I 6 HOH A 29 629 146 HOH HOH . I 6 HOH A 30 630 183 HOH HOH . I 6 HOH A 31 631 40 HOH HOH . I 6 HOH A 32 632 33 HOH HOH . I 6 HOH A 33 633 34 HOH HOH . I 6 HOH A 34 634 6 HOH HOH . I 6 HOH A 35 635 161 HOH HOH . I 6 HOH A 36 636 55 HOH HOH . I 6 HOH A 37 637 123 HOH HOH . I 6 HOH A 38 638 117 HOH HOH . I 6 HOH A 39 639 145 HOH HOH . I 6 HOH A 40 640 54 HOH HOH . I 6 HOH A 41 641 15 HOH HOH . I 6 HOH A 42 642 75 HOH HOH . I 6 HOH A 43 643 28 HOH HOH . I 6 HOH A 44 644 204 HOH HOH . I 6 HOH A 45 645 171 HOH HOH . I 6 HOH A 46 646 37 HOH HOH . I 6 HOH A 47 647 20 HOH HOH . I 6 HOH A 48 648 56 HOH HOH . I 6 HOH A 49 649 137 HOH HOH . I 6 HOH A 50 650 129 HOH HOH . I 6 HOH A 51 651 1 HOH HOH . I 6 HOH A 52 652 172 HOH HOH . I 6 HOH A 53 653 105 HOH HOH . I 6 HOH A 54 654 136 HOH HOH . I 6 HOH A 55 655 130 HOH HOH . I 6 HOH A 56 656 212 HOH HOH . I 6 HOH A 57 657 157 HOH HOH . I 6 HOH A 58 658 187 HOH HOH . I 6 HOH A 59 659 217 HOH HOH . I 6 HOH A 60 660 44 HOH HOH . I 6 HOH A 61 661 52 HOH HOH . I 6 HOH A 62 662 168 HOH HOH . I 6 HOH A 63 663 227 HOH HOH . I 6 HOH A 64 664 35 HOH HOH . I 6 HOH A 65 665 113 HOH HOH . I 6 HOH A 66 666 94 HOH HOH . I 6 HOH A 67 667 175 HOH HOH . I 6 HOH A 68 668 206 HOH HOH . I 6 HOH A 69 669 165 HOH HOH . I 6 HOH A 70 670 19 HOH HOH . I 6 HOH A 71 671 83 HOH HOH . I 6 HOH A 72 672 79 HOH HOH . I 6 HOH A 73 673 17 HOH HOH . I 6 HOH A 74 674 150 HOH HOH . I 6 HOH A 75 675 65 HOH HOH . I 6 HOH A 76 676 194 HOH HOH . I 6 HOH A 77 677 42 HOH HOH . I 6 HOH A 78 678 36 HOH HOH . I 6 HOH A 79 679 80 HOH HOH . I 6 HOH A 80 680 21 HOH HOH . I 6 HOH A 81 681 210 HOH HOH . I 6 HOH A 82 682 156 HOH HOH . I 6 HOH A 83 683 107 HOH HOH . I 6 HOH A 84 684 179 HOH HOH . I 6 HOH A 85 685 10 HOH HOH . I 6 HOH A 86 686 64 HOH HOH . I 6 HOH A 87 687 86 HOH HOH . I 6 HOH A 88 688 2 HOH HOH . I 6 HOH A 89 689 43 HOH HOH . I 6 HOH A 90 690 49 HOH HOH . I 6 HOH A 91 691 47 HOH HOH . I 6 HOH A 92 692 22 HOH HOH . I 6 HOH A 93 693 215 HOH HOH . I 6 HOH A 94 694 109 HOH HOH . I 6 HOH A 95 695 41 HOH HOH . I 6 HOH A 96 696 142 HOH HOH . I 6 HOH A 97 697 176 HOH HOH . I 6 HOH A 98 698 92 HOH HOH . I 6 HOH A 99 699 7 HOH HOH . I 6 HOH A 100 700 121 HOH HOH . I 6 HOH A 101 701 27 HOH HOH . I 6 HOH A 102 702 32 HOH HOH . I 6 HOH A 103 703 135 HOH HOH . I 6 HOH A 104 704 68 HOH HOH . I 6 HOH A 105 705 30 HOH HOH . I 6 HOH A 106 706 66 HOH HOH . I 6 HOH A 107 707 48 HOH HOH . I 6 HOH A 108 708 46 HOH HOH . I 6 HOH A 109 709 8 HOH HOH . I 6 HOH A 110 710 39 HOH HOH . I 6 HOH A 111 711 14 HOH HOH . I 6 HOH A 112 712 81 HOH HOH . I 6 HOH A 113 713 18 HOH HOH . I 6 HOH A 114 714 153 HOH HOH . I 6 HOH A 115 715 73 HOH HOH . I 6 HOH A 116 716 59 HOH HOH . I 6 HOH A 117 717 61 HOH HOH . I 6 HOH A 118 718 11 HOH HOH . I 6 HOH A 119 719 38 HOH HOH . I 6 HOH A 120 720 76 HOH HOH . I 6 HOH A 121 721 88 HOH HOH . I 6 HOH A 122 722 50 HOH HOH . I 6 HOH A 123 723 110 HOH HOH . I 6 HOH A 124 724 188 HOH HOH . I 6 HOH A 125 725 195 HOH HOH . I 6 HOH A 126 726 57 HOH HOH . I 6 HOH A 127 727 24 HOH HOH . I 6 HOH A 128 728 192 HOH HOH . I 6 HOH A 129 729 5 HOH HOH . I 6 HOH A 130 730 31 HOH HOH . I 6 HOH A 131 731 69 HOH HOH . I 6 HOH A 132 732 119 HOH HOH . I 6 HOH A 133 733 16 HOH HOH . I 6 HOH A 134 734 45 HOH HOH . I 6 HOH A 135 735 115 HOH HOH . I 6 HOH A 136 736 104 HOH HOH . I 6 HOH A 137 737 166 HOH HOH . I 6 HOH A 138 738 87 HOH HOH . I 6 HOH A 139 739 190 HOH HOH . I 6 HOH A 140 740 106 HOH HOH . I 6 HOH A 141 741 9 HOH HOH . I 6 HOH A 142 742 143 HOH HOH . I 6 HOH A 143 743 13 HOH HOH . I 6 HOH A 144 744 116 HOH HOH . I 6 HOH A 145 745 177 HOH HOH . I 6 HOH A 146 746 95 HOH HOH . I 6 HOH A 147 747 140 HOH HOH . I 6 HOH A 148 748 60 HOH HOH . I 6 HOH A 149 749 84 HOH HOH . I 6 HOH A 150 750 209 HOH HOH . I 6 HOH A 151 751 134 HOH HOH . I 6 HOH A 152 752 51 HOH HOH . I 6 HOH A 153 753 141 HOH HOH . I 6 HOH A 154 754 193 HOH HOH . I 6 HOH A 155 755 29 HOH HOH . I 6 HOH A 156 756 77 HOH HOH . I 6 HOH A 157 757 26 HOH HOH . I 6 HOH A 158 758 25 HOH HOH . I 6 HOH A 159 759 224 HOH HOH . I 6 HOH A 160 760 3 HOH HOH . I 6 HOH A 161 761 155 HOH HOH . I 6 HOH A 162 762 191 HOH HOH . I 6 HOH A 163 763 144 HOH HOH . I 6 HOH A 164 764 132 HOH HOH . I 6 HOH A 165 765 138 HOH HOH . I 6 HOH A 166 766 201 HOH HOH . I 6 HOH A 167 767 207 HOH HOH . I 6 HOH A 168 768 131 HOH HOH . I 6 HOH A 169 769 159 HOH HOH . I 6 HOH A 170 770 133 HOH HOH . I 6 HOH A 171 771 164 HOH HOH . I 6 HOH A 172 772 96 HOH HOH . I 6 HOH A 173 773 125 HOH HOH . I 6 HOH A 174 774 111 HOH HOH . I 6 HOH A 175 775 98 HOH HOH . I 6 HOH A 176 776 63 HOH HOH . I 6 HOH A 177 777 151 HOH HOH . I 6 HOH A 178 778 216 HOH HOH . I 6 HOH A 179 779 208 HOH HOH . I 6 HOH A 180 780 202 HOH HOH . I 6 HOH A 181 781 163 HOH HOH . I 6 HOH A 182 782 169 HOH HOH . I 6 HOH A 183 783 196 HOH HOH . I 6 HOH A 184 784 173 HOH HOH . I 6 HOH A 185 785 99 HOH HOH . I 6 HOH A 186 786 154 HOH HOH . I 6 HOH A 187 787 53 HOH HOH . I 6 HOH A 188 788 211 HOH HOH . I 6 HOH A 189 789 124 HOH HOH . I 6 HOH A 190 790 181 HOH HOH . I 6 HOH A 191 791 180 HOH HOH . I 6 HOH A 192 792 147 HOH HOH . I 6 HOH A 193 793 127 HOH HOH . I 6 HOH A 194 794 152 HOH HOH . I 6 HOH A 195 795 70 HOH HOH . I 6 HOH A 196 796 199 HOH HOH . I 6 HOH A 197 797 198 HOH HOH . I 6 HOH A 198 798 189 HOH HOH . I 6 HOH A 199 799 139 HOH HOH . I 6 HOH A 200 800 89 HOH HOH . I 6 HOH A 201 801 223 HOH HOH . I 6 HOH A 202 802 114 HOH HOH . I 6 HOH A 203 803 203 HOH HOH . I 6 HOH A 204 804 178 HOH HOH . I 6 HOH A 205 805 174 HOH HOH . I 6 HOH A 206 806 222 HOH HOH . I 6 HOH A 207 807 149 HOH HOH . I 6 HOH A 208 808 218 HOH HOH . I 6 HOH A 209 809 108 HOH HOH . I 6 HOH A 210 810 100 HOH HOH . I 6 HOH A 211 811 213 HOH HOH . I 6 HOH A 212 812 220 HOH HOH . I 6 HOH A 213 813 158 HOH HOH . I 6 HOH A 214 814 4 HOH HOH . I 6 HOH A 215 815 214 HOH HOH . I 6 HOH A 216 816 101 HOH HOH . I 6 HOH A 217 817 90 HOH HOH . I 6 HOH A 218 818 78 HOH HOH . I 6 HOH A 219 819 58 HOH HOH . I 6 HOH A 220 820 102 HOH HOH . I 6 HOH A 221 821 82 HOH HOH . I 6 HOH A 222 822 185 HOH HOH . I 6 HOH A 223 823 229 HOH HOH . I 6 HOH A 224 824 67 HOH HOH . I 6 HOH A 225 825 228 HOH HOH . I 6 HOH A 226 826 148 HOH HOH . I 6 HOH A 227 827 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 30.145 16.01 -1.314 1 50.44 ? C1 EDO 504 A 1 HETATM 2 O O1 EDO . . . E 4 29.388 17.051 -0.686 1 56.71 ? O1 EDO 504 A 1 HETATM 3 C C2 EDO . . . E 4 29.261 14.793 -1.577 1 53.21 ? C2 EDO 504 A 1 HETATM 4 O O2 EDO . . . E 4 28.231 15.131 -2.515 1 63.93 ? O2 EDO 504 A 1 HETATM 5 H H11 EDO . . . E 4 30.556 16.374 -2.258 1 60.52 ? H11 EDO 504 A 1 HETATM 6 H H12 EDO . . . E 4 30.98 15.724 -0.672 1 60.52 ? H12 EDO 504 A 1 HETATM 7 H HO1 EDO . . . E 4 29.942 17.838 -0.59 1 68.06 ? HO1 EDO 504 A 1 HETATM 8 H H21 EDO . . . E 4 28.812 14.455 -0.641 1 63.85 ? H21 EDO 504 A 1 HETATM 9 H H22 EDO . . . E 4 29.867 13.975 -1.973 1 63.85 ? H22 EDO 504 A 1 HETATM 10 H HO2 EDO . . . E 4 27.66 14.364 -2.657 1 76.71 ? HO2 EDO 504 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #