data_6SYT # _model_server_result.job_id MElYZp7Ms8CqWSMRgD8sOQ _model_server_result.datetime_utc '2024-10-12 05:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6syt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 6SYT # _exptl.entry_id 6SYT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OG SER 218 C SER 218 1_555 F MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc2 C OG1 THR 253 C THR 253 1_555 F MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc3 E O2B ATP . C ATP 601 1_555 F MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6SYT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IHP A 1 3701 1 IHP IHP . E 5 ATP C 1 601 1 ATP ATP . F 6 MG C 1 602 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 5 152.245 193.105 141.377 1 35.5 ? PG ATP 601 C 1 HETATM 2 O O1G ATP . . . E 5 152.934 194.032 142.347 1 35.5 ? O1G ATP 601 C 1 HETATM 3 O O2G ATP . . . E 5 150.953 193.674 140.843 1 35.5 ? O2G ATP 601 C 1 HETATM 4 O O3G ATP . . . E 5 153.164 192.619 140.282 1 35.5 ? O3G ATP 601 C 1 HETATM 5 P PB ATP . . . E 5 152.69 190.766 143.108 1 35.5 ? PB ATP 601 C 1 HETATM 6 O O1B ATP . . . E 5 152.371 189.377 142.661 1 35.5 ? O1B ATP 601 C 1 HETATM 7 O O2B ATP . . . E 5 154.111 191.224 143.136 1 35.5 ? O2B ATP 601 C 1 HETATM 8 O O3B ATP . . . E 5 151.837 191.795 142.227 1 35.5 ? O3B ATP 601 C 1 HETATM 9 P PA ATP . . . E 5 152.38 190.396 146.003 1 35.5 ? PA ATP 601 C 1 HETATM 10 O O1A ATP . . . E 5 153.483 191.196 146.613 1 35.5 ? O1A ATP 601 C 1 HETATM 11 O O2A ATP . . . E 5 152.564 188.92 145.877 1 35.5 ? O2A ATP 601 C 1 HETATM 12 O O3A ATP . . . E 5 152.047 191 144.555 1 35.5 ? O3A ATP 601 C 1 HETATM 13 O O5' ATP . . . E 5 151.011 190.697 146.783 1 35.5 ? O5' ATP 601 C 1 HETATM 14 C C5' ATP . . . E 5 149.915 189.758 146.646 1 35.5 ? C5' ATP 601 C 1 HETATM 15 C C4' ATP . . . E 5 149.177 189.656 147.958 1 35.5 ? C4' ATP 601 C 1 HETATM 16 O O4' ATP . . . E 5 148.581 188.337 148.064 1 35.5 ? O4' ATP 601 C 1 HETATM 17 C C3' ATP . . . E 5 150.029 189.828 149.223 1 35.5 ? C3' ATP 601 C 1 HETATM 18 O O3' ATP . . . E 5 149.305 190.501 150.245 1 35.5 ? O3' ATP 601 C 1 HETATM 19 C C2' ATP . . . E 5 150.34 188.381 149.616 1 35.5 ? C2' ATP 601 C 1 HETATM 20 O O2' ATP . . . E 5 150.613 188.239 150.993 1 35.5 ? O2' ATP 601 C 1 HETATM 21 C C1' ATP . . . E 5 149.038 187.689 149.23 1 35.5 ? C1' ATP 601 C 1 HETATM 22 N N9 ATP . . . E 5 149.187 186.269 148.936 1 35.5 ? N9 ATP 601 C 1 HETATM 23 C C8 ATP . . . E 5 149.798 185.698 147.846 1 35.5 ? C8 ATP 601 C 1 HETATM 24 N N7 ATP . . . E 5 149.762 184.385 147.88 1 35.5 ? N7 ATP 601 C 1 HETATM 25 C C5 ATP . . . E 5 149.091 184.081 149.058 1 35.5 ? C5 ATP 601 C 1 HETATM 26 C C6 ATP . . . E 5 148.733 182.861 149.664 1 35.5 ? C6 ATP 601 C 1 HETATM 27 N N6 ATP . . . E 5 149.012 181.668 149.147 1 35.5 ? N6 ATP 601 C 1 HETATM 28 N N1 ATP . . . E 5 148.067 182.924 150.842 1 35.5 ? N1 ATP 601 C 1 HETATM 29 C C2 ATP . . . E 5 147.789 184.128 151.358 1 35.5 ? C2 ATP 601 C 1 HETATM 30 N N3 ATP . . . E 5 148.075 185.336 150.879 1 35.5 ? N3 ATP 601 C 1 HETATM 31 C C4 ATP . . . E 5 148.734 185.239 149.714 1 35.5 ? C4 ATP 601 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #