data_6SZ5 # _model_server_result.job_id D5MMMr20eQs5UC6Ex_Mssg _model_server_result.datetime_utc '2024-10-18 16:24:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":504}' # _entry.id 6SZ5 # _exptl.entry_id 6SZ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SZ5 _cell.length_a 24.759 _cell.length_b 60.84 _cell.length_c 102.444 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 A ASP 21 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc2 A OD1 ASP 23 A ASP 23 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 A OD1 ASP 25 A ASP 25 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 A O THR 27 A THR 27 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 A OE1 GLU 32 A GLU 32 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc6 A OE2 GLU 32 A GLU 32 1_555 G CA CA . A CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc7 A OD1 ASP 57 A ASP 57 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc8 A OD2 ASP 59 A ASP 59 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc9 A OD1 ASN 61 A ASN 61 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc10 A O THR 63 A THR 63 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc11 A OE1 GLU 68 A GLU 68 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc12 A OE2 GLU 68 A GLU 68 1_555 F CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc13 A OD1 ASP 94 A ASP 94 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc14 A OD1 ASP 96 A ASP 96 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc15 A OD1 ASN 98 A ASN 98 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc16 A O TYR 100 A TYR 100 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc17 A OE1 GLU 105 A GLU 105 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc18 A OE2 GLU 105 A GLU 105 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc19 A OD2 ASP 119 A ASP 119 1_555 G CA CA . A CA 504 1_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc20 A OD1 ASP 130 A ASP 130 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc21 A OD1 ASP 132 A ASP 132 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc22 A OD1 ASP 134 A ASP 134 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc23 A O GLN 136 A GLN 136 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc24 A OE1 GLU 141 A GLU 141 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc25 A OE2 GLU 141 A GLU 141 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SZ5 _atom_sites.fract_transf_matrix[1][1] 0.040389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 501 501 CA CA . E 3 CA A 1 502 502 CA CA . F 3 CA A 1 503 504 CA CA . G 3 CA A 1 504 505 CA CA . H 4 HOH A 1 601 14 HOH HOH . H 4 HOH A 2 602 42 HOH HOH . H 4 HOH A 3 603 2 HOH HOH . H 4 HOH A 4 604 1 HOH HOH . H 4 HOH A 5 605 36 HOH HOH . H 4 HOH A 6 606 13 HOH HOH . H 4 HOH A 7 607 44 HOH HOH . H 4 HOH A 8 608 46 HOH HOH . H 4 HOH A 9 609 7 HOH HOH . H 4 HOH A 10 610 27 HOH HOH . H 4 HOH A 11 611 37 HOH HOH . H 4 HOH A 12 612 24 HOH HOH . H 4 HOH A 13 613 5 HOH HOH . H 4 HOH A 14 614 4 HOH HOH . H 4 HOH A 15 615 19 HOH HOH . H 4 HOH A 16 616 40 HOH HOH . H 4 HOH A 17 617 25 HOH HOH . H 4 HOH A 18 618 3 HOH HOH . H 4 HOH A 19 619 48 HOH HOH . H 4 HOH A 20 620 18 HOH HOH . H 4 HOH A 21 621 45 HOH HOH . H 4 HOH A 22 622 20 HOH HOH . H 4 HOH A 23 623 29 HOH HOH . H 4 HOH A 24 624 47 HOH HOH . H 4 HOH A 25 625 15 HOH HOH . H 4 HOH A 26 626 41 HOH HOH . H 4 HOH A 27 627 12 HOH HOH . H 4 HOH A 28 628 49 HOH HOH . H 4 HOH A 29 629 43 HOH HOH . H 4 HOH A 30 630 11 HOH HOH . H 4 HOH A 31 631 50 HOH HOH . I 4 HOH C 1 701 26 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.34 _atom_site.Cartn_y 40.172 _atom_site.Cartn_z 38.92 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 504 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #