data_6SZ6 # _model_server_result.job_id n21bEUJE1nPpNHicyd2RFw _model_server_result.datetime_utc '2024-11-12 20:38:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":916}' # _entry.id 6SZ6 # _exptl.entry_id 6SZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SZ6 _cell.length_a 121.86 _cell.length_b 121.86 _cell.length_c 264.912 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 5 2 1 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 5 3 2 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 901 NAG 2 n B NAG 2 B 2 NAG A 902 NAG 2 n B BMA 3 B 3 BMA A 903 BMA 2 n C NAG 1 C 1 NAG A 906 NAG 2 n C NAG 2 C 2 NAG A 907 NAG 2 n C BMA 3 C 3 BMA A 908 BMA 3 n D NAG 1 D 1 NAG A 910 NAG 3 n D NAG 2 D 2 NAG A 911 NAG 4 n E NAG 1 E 1 NAG A 912 NAG 4 n E NAG 2 E 2 NAG A 913 NAG 4 n E BMA 3 E 3 BMA A 914 BMA 4 n E MAN 4 E 4 MAN A 915 MAN 5 n F MAN 1 F 1 MAN A 917 MAN 5 n F MAN 2 F 2 MAN A 918 MAN 5 n F MAN 3 F 3 MAN A 919 MAN 3 n G NAG 1 G 1 NAG A 931 NAG 3 n G NAG 2 G 2 NAG A 932 NAG 2 n H NAG 1 H 1 NAG A 976 NAG 2 n H NAG 2 H 2 NAG A 977 NAG 2 n H BMA 3 H 3 BMA A 978 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 84 1_555 A SG CYS 69 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 222 A CYS 253 1_555 A SG CYS 233 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 411 A CYS 442 1_555 A SG CYS 416 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A ND2 ASN 41 A ASN 72 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 A ND2 ASN 228 A ASN 259 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale3 A ND2 ASN 291 A ASN 322 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 298 A ASN 329 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale5 A ND2 ASN 541 A ASN 572 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 A ND2 ASN 667 A ASN 698 1_555 M C1 NAG . A NAG 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 A ND2 ASN 689 A ASN 720 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale9 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale15 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale16 F O6 MAN . F MAN 1 1_555 F C1 MAN . F MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale17 F O2 MAN . F MAN 2 1_555 F C1 MAN . F MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale18 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale20 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 266 n n C1 O1 MAN sing 267 n n C1 O5 MAN sing 268 n n C1 H1 MAN sing 269 n n C2 C3 MAN sing 270 n n C2 O2 MAN sing 271 n n C2 H2 MAN sing 272 n n C3 C4 MAN sing 273 n n C3 O3 MAN sing 274 n n C3 H3 MAN sing 275 n n C4 C5 MAN sing 276 n n C4 O4 MAN sing 277 n n C4 H4 MAN sing 278 n n C5 C6 MAN sing 279 n n C5 O5 MAN sing 280 n n C5 H5 MAN sing 281 n n C6 O6 MAN sing 282 n n C6 H61 MAN sing 283 n n C6 H62 MAN sing 284 n n O1 HO1 MAN sing 285 n n O2 HO2 MAN sing 286 n n O3 HO3 MAN sing 287 n n O4 HO4 MAN sing 288 n n O6 HO6 MAN sing 289 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6SZ6 _atom_sites.fract_transf_matrix[1][1] 0.008206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 MAN A 1 916 920 MAN MAN . J 7 NAG A 1 917 924 NAG NAG . K 8 BMA A 1 918 925 BMA BMA . L 8 BMA A 1 921 950 BMA BMA . M 7 NAG A 1 922 960 NAG NAG . N 7 NAG A 1 923 970 NAG NAG . O 7 NAG A 1 924 975 NAG NAG . P 9 BGC A 1 928 942 BGC BGC . Q 10 HOH A 1 1001 6 HOH HOH . Q 10 HOH A 2 1002 3 HOH HOH . Q 10 HOH A 3 1003 1 HOH HOH . Q 10 HOH A 4 1004 4 HOH HOH . Q 10 HOH A 5 1005 5 HOH HOH . Q 10 HOH A 6 1006 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . I 6 -53.523 18.037 -24.078 1 58.44 ? C1 MAN 916 A 1 HETATM 2 C C2 MAN . . . I 6 -54.27 17.892 -25.392 1 55.24 ? C2 MAN 916 A 1 HETATM 3 C C3 MAN . . . I 6 -53.255 17.966 -26.577 1 53.02 ? C3 MAN 916 A 1 HETATM 4 C C4 MAN . . . I 6 -51.826 18.329 -26.123 1 51.01 ? C4 MAN 916 A 1 HETATM 5 C C5 MAN . . . I 6 -51.367 17.433 -24.965 1 50.7 ? C5 MAN 916 A 1 HETATM 6 C C6 MAN . . . I 6 -50.26 18.049 -24.143 1 47.4 ? C6 MAN 916 A 1 HETATM 7 O O2 MAN . . . I 6 -55.264 18.919 -25.55 1 57.13 ? O2 MAN 916 A 1 HETATM 8 O O3 MAN . . . I 6 -53.666 18.882 -27.596 1 57.01 ? O3 MAN 916 A 1 HETATM 9 O O4 MAN . . . I 6 -50.915 18.165 -27.195 1 49.88 ? O4 MAN 916 A 1 HETATM 10 O O5 MAN . . . I 6 -52.452 17.146 -24.05 1 52.63 ? O5 MAN 916 A 1 HETATM 11 O O6 MAN . . . I 6 -49.814 17.063 -23.229 1 42.63 ? O6 MAN 916 A 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #