data_6SZ6 # _model_server_result.job_id lFKaLPIj-BXavTJXVQVfOA _model_server_result.datetime_utc '2024-11-12 20:43:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sz6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":922}' # _entry.id 6SZ6 # _exptl.entry_id 6SZ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SZ6 _cell.length_a 121.86 _cell.length_b 121.86 _cell.length_c 264.912 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SZ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 M N N ? 7 N N N ? 7 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 5 2 1 MAN MAN C1 O1 . O6 HO6 . sing 8 ? 5 3 2 MAN MAN C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 901 NAG 2 n B NAG 2 B 2 NAG A 902 NAG 2 n B BMA 3 B 3 BMA A 903 BMA 2 n C NAG 1 C 1 NAG A 906 NAG 2 n C NAG 2 C 2 NAG A 907 NAG 2 n C BMA 3 C 3 BMA A 908 BMA 3 n D NAG 1 D 1 NAG A 910 NAG 3 n D NAG 2 D 2 NAG A 911 NAG 4 n E NAG 1 E 1 NAG A 912 NAG 4 n E NAG 2 E 2 NAG A 913 NAG 4 n E BMA 3 E 3 BMA A 914 BMA 4 n E MAN 4 E 4 MAN A 915 MAN 5 n F MAN 1 F 1 MAN A 917 MAN 5 n F MAN 2 F 2 MAN A 918 MAN 5 n F MAN 3 F 3 MAN A 919 MAN 3 n G NAG 1 G 1 NAG A 931 NAG 3 n G NAG 2 G 2 NAG A 932 NAG 2 n H NAG 1 H 1 NAG A 976 NAG 2 n H NAG 2 H 2 NAG A 977 NAG 2 n H BMA 3 H 3 BMA A 978 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 84 1_555 A SG CYS 69 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 222 A CYS 253 1_555 A SG CYS 233 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 A SG CYS 411 A CYS 442 1_555 A SG CYS 416 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A ND2 ASN 41 A ASN 72 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale2 A ND2 ASN 228 A ASN 259 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale3 A ND2 ASN 291 A ASN 322 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 298 A ASN 329 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale5 A ND2 ASN 541 A ASN 572 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale6 A ND2 ASN 667 A ASN 698 1_555 M C1 NAG . A NAG 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 A ND2 ASN 689 A ASN 720 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale9 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale11 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale12 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? covale ? covale15 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? covale ? covale16 F O6 MAN . F MAN 1 1_555 F C1 MAN . F MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale17 F O2 MAN . F MAN 2 1_555 F C1 MAN . F MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale18 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale20 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 309 n n C1 O1 NAG sing 310 n n C1 O5 NAG sing 311 n n C1 H1 NAG sing 312 n n C2 C3 NAG sing 313 n n C2 N2 NAG sing 314 n n C2 H2 NAG sing 315 n n C3 C4 NAG sing 316 n n C3 O3 NAG sing 317 n n C3 H3 NAG sing 318 n n C4 C5 NAG sing 319 n n C4 O4 NAG sing 320 n n C4 H4 NAG sing 321 n n C5 C6 NAG sing 322 n n C5 O5 NAG sing 323 n n C5 H5 NAG sing 324 n n C6 O6 NAG sing 325 n n C6 H61 NAG sing 326 n n C6 H62 NAG sing 327 n n C7 C8 NAG sing 328 n n C7 N2 NAG sing 329 n n C7 O7 NAG doub 330 n n C8 H81 NAG sing 331 n n C8 H82 NAG sing 332 n n C8 H83 NAG sing 333 n n N2 HN2 NAG sing 334 n n O1 HO1 NAG sing 335 n n O3 HO3 NAG sing 336 n n O4 HO4 NAG sing 337 n n O6 HO6 NAG sing 338 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6SZ6 _atom_sites.fract_transf_matrix[1][1] 0.008206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 6 MAN A 1 916 920 MAN MAN . J 7 NAG A 1 917 924 NAG NAG . K 8 BMA A 1 918 925 BMA BMA . L 8 BMA A 1 921 950 BMA BMA . M 7 NAG A 1 922 960 NAG NAG . N 7 NAG A 1 923 970 NAG NAG . O 7 NAG A 1 924 975 NAG NAG . P 9 BGC A 1 928 942 BGC BGC . Q 10 HOH A 1 1001 6 HOH HOH . Q 10 HOH A 2 1002 3 HOH HOH . Q 10 HOH A 3 1003 1 HOH HOH . Q 10 HOH A 4 1004 4 HOH HOH . Q 10 HOH A 5 1005 5 HOH HOH . Q 10 HOH A 6 1006 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 7 -30.52 18.612 2.168 1 73.86 ? C1 NAG 922 A 1 HETATM 2 C C2 NAG . . . M 7 -29.683 18.565 3.468 1 80.36 ? C2 NAG 922 A 1 HETATM 3 C C3 NAG . . . M 7 -28.964 19.899 3.7 1 85.54 ? C3 NAG 922 A 1 HETATM 4 C C4 NAG . . . M 7 -28.135 20.279 2.479 1 83.06 ? C4 NAG 922 A 1 HETATM 5 C C5 NAG . . . M 7 -29.06 20.371 1.272 1 81.53 ? C5 NAG 922 A 1 HETATM 6 C C6 NAG . . . M 7 -28.346 20.766 -0.006 1 84.28 ? C6 NAG 922 A 1 HETATM 7 C C7 NAG . . . M 7 -30.648 17 5.1 1 85.24 ? C7 NAG 922 A 1 HETATM 8 C C8 NAG . . . M 7 -31.55 16.855 6.29 1 85.12 ? C8 NAG 922 A 1 HETATM 9 N N2 NAG . . . M 7 -30.519 18.238 4.613 1 82.38 ? N2 NAG 922 A 1 HETATM 10 O O3 NAG . . . M 7 -28.149 19.817 4.865 1 88.57 ? O3 NAG 922 A 1 HETATM 11 O O4 NAG . . . M 7 -27.446 21.514 2.667 1 77.65 ? O4 NAG 922 A 1 HETATM 12 O O5 NAG . . . M 7 -29.684 19.094 1.052 1 75.7 ? O5 NAG 922 A 1 HETATM 13 O O6 NAG . . . M 7 -28.117 19.67 -0.882 1 83.15 ? O6 NAG 922 A 1 HETATM 14 O O7 NAG . . . M 7 -30.063 16.042 4.604 1 87.18 ? O7 NAG 922 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #