data_6SZO # _model_server_result.job_id 3m6E2KFdpABrcnYIEw84SA _model_server_result.datetime_utc '2024-11-24 00:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6szo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6SZO # _exptl.entry_id 6SZO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.139 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'beta-D-galactopyranuronic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 63.653 _cell.angle_beta 86.794 _cell.angle_gamma 71.166 _cell.entry_id 6SZO _cell.length_a 44.626 _cell.length_b 46.138 _cell.length_c 50.195 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O HIS 292 A HIS 303 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A O GLU 294 A GLU 305 1_555 G MG MG . A MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 G MG MG . A MG 506 1_555 NA O HOH . A HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc4 G MG MG . A MG 506 1_555 NA O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc5 G MG MG . A MG 506 1_555 NA O HOH . A HOH 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'C6 H10 O7' _chem_comp.formula_weight 194.139 _chem_comp.id GTR _chem_comp.mon_nstd_flag . _chem_comp.name 'beta-D-galactopyranuronic acid' _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 'beta-D-galacturonic acid;D-galacturonic acid;galacturonic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GTR sing 147 n n C1 O1 GTR sing 148 n n C1 O5 GTR sing 149 n n C1 H1 GTR sing 150 n n C2 C3 GTR sing 151 n n C2 O2 GTR sing 152 n n C2 H2 GTR sing 153 n n C3 C4 GTR sing 154 n n C3 O3 GTR sing 155 n n C3 H3 GTR sing 156 n n C4 C5 GTR sing 157 n n C4 O4 GTR sing 158 n n C4 H4 GTR sing 159 n n C5 C6 GTR sing 160 n n C5 O5 GTR sing 161 n n C5 H5 GTR sing 162 n n C6 O6A GTR doub 163 n n C6 O6B GTR sing 164 n n O1 HO1 GTR sing 165 n n O2 HO2 GTR sing 166 n n O3 HO3 GTR sing 167 n n O4 HO4 GTR sing 168 n n O6B HO6B GTR sing 169 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GTR DGalpAb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GTR 'b-D-galactopyranuronic acid' 'COMMON NAME' GMML 1 GTR b-D-GalpA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GTR GalA 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6SZO _atom_sites.fract_transf_matrix[1][1] 0.022408 _atom_sites.fract_transf_matrix[1][2] -0.007643 _atom_sites.fract_transf_matrix[1][3] 0.002451 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0229 _atom_sites.fract_transf_matrix[2][3] -0.011557 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022351 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTR A 1 501 1 GTR BDA . C 3 DMS A 1 502 1 DMS DMS . D 3 DMS A 1 503 2 DMS DMS . E 3 DMS A 1 504 3 DMS DMS . F 3 DMS A 1 505 4 DMS DMS . G 4 MG A 1 506 1 MG MG . H 5 EDO A 1 507 1 EDO EDO . I 5 EDO A 1 508 2 EDO EDO . J 5 EDO A 1 509 3 EDO EDO . K 5 EDO A 1 510 4 EDO EDO . L 5 EDO A 1 511 5 EDO EDO . M 5 EDO A 1 512 6 EDO EDO . N 5 EDO A 1 513 7 EDO EDO . O 5 EDO A 1 514 8 EDO EDO . P 5 EDO A 1 515 9 EDO EDO . Q 5 EDO A 1 516 10 EDO EDO . R 5 EDO A 1 517 11 EDO EDO . S 5 EDO A 1 518 12 EDO EDO . T 5 EDO A 1 519 13 EDO EDO . U 5 EDO A 1 520 14 EDO EDO . V 5 EDO A 1 521 15 EDO EDO . W 5 EDO A 1 522 16 EDO EDO . X 5 EDO A 1 523 17 EDO EDO . Y 5 EDO A 1 524 18 EDO EDO . Z 5 EDO A 1 525 19 EDO EDO . AA 5 EDO A 1 526 20 EDO EDO . BA 5 EDO A 1 527 21 EDO EDO . CA 5 EDO A 1 528 22 EDO EDO . DA 5 EDO A 1 529 23 EDO EDO . EA 5 EDO A 1 530 24 EDO EDO . FA 6 PEG A 1 531 1 PEG PEG . GA 6 PEG A 1 532 2 PEG PEG . HA 6 PEG A 1 533 3 PEG PEG . IA 6 PEG A 1 534 4 PEG PEG . JA 7 PGE A 1 535 1 PGE PGE . KA 7 PGE A 1 536 2 PGE PGE . LA 7 PGE A 1 537 3 PGE PGE . MA 7 PGE A 1 538 4 PGE PGE . NA 8 HOH A 1 601 141 HOH HOH . NA 8 HOH A 2 602 84 HOH HOH . NA 8 HOH A 3 603 74 HOH HOH . NA 8 HOH A 4 604 29 HOH HOH . NA 8 HOH A 5 605 87 HOH HOH . NA 8 HOH A 6 606 110 HOH HOH . NA 8 HOH A 7 607 33 HOH HOH . NA 8 HOH A 8 608 21 HOH HOH . NA 8 HOH A 9 609 157 HOH HOH . NA 8 HOH A 10 610 123 HOH HOH . NA 8 HOH A 11 611 72 HOH HOH . NA 8 HOH A 12 612 11 HOH HOH . NA 8 HOH A 13 613 97 HOH HOH . NA 8 HOH A 14 614 16 HOH HOH . NA 8 HOH A 15 615 144 HOH HOH . NA 8 HOH A 16 616 46 HOH HOH . NA 8 HOH A 17 617 50 HOH HOH . NA 8 HOH A 18 618 63 HOH HOH . NA 8 HOH A 19 619 62 HOH HOH . NA 8 HOH A 20 620 61 HOH HOH . NA 8 HOH A 21 621 27 HOH HOH . NA 8 HOH A 22 622 137 HOH HOH . NA 8 HOH A 23 623 88 HOH HOH . NA 8 HOH A 24 624 59 HOH HOH . NA 8 HOH A 25 625 164 HOH HOH . NA 8 HOH A 26 626 44 HOH HOH . NA 8 HOH A 27 627 109 HOH HOH . NA 8 HOH A 28 628 40 HOH HOH . NA 8 HOH A 29 629 78 HOH HOH . NA 8 HOH A 30 630 30 HOH HOH . NA 8 HOH A 31 631 101 HOH HOH . NA 8 HOH A 32 632 100 HOH HOH . NA 8 HOH A 33 633 117 HOH HOH . NA 8 HOH A 34 634 161 HOH HOH . NA 8 HOH A 35 635 127 HOH HOH . NA 8 HOH A 36 636 152 HOH HOH . NA 8 HOH A 37 637 57 HOH HOH . NA 8 HOH A 38 638 41 HOH HOH . NA 8 HOH A 39 639 28 HOH HOH . NA 8 HOH A 40 640 111 HOH HOH . NA 8 HOH A 41 641 5 HOH HOH . NA 8 HOH A 42 642 23 HOH HOH . NA 8 HOH A 43 643 106 HOH HOH . NA 8 HOH A 44 644 107 HOH HOH . NA 8 HOH A 45 645 22 HOH HOH . NA 8 HOH A 46 646 150 HOH HOH . NA 8 HOH A 47 647 47 HOH HOH . NA 8 HOH A 48 648 9 HOH HOH . NA 8 HOH A 49 649 60 HOH HOH . NA 8 HOH A 50 650 25 HOH HOH . NA 8 HOH A 51 651 103 HOH HOH . NA 8 HOH A 52 652 145 HOH HOH . NA 8 HOH A 53 653 26 HOH HOH . NA 8 HOH A 54 654 143 HOH HOH . NA 8 HOH A 55 655 96 HOH HOH . NA 8 HOH A 56 656 142 HOH HOH . NA 8 HOH A 57 657 146 HOH HOH . NA 8 HOH A 58 658 160 HOH HOH . NA 8 HOH A 59 659 42 HOH HOH . NA 8 HOH A 60 660 125 HOH HOH . NA 8 HOH A 61 661 124 HOH HOH . NA 8 HOH A 62 662 76 HOH HOH . NA 8 HOH A 63 663 48 HOH HOH . NA 8 HOH A 64 664 140 HOH HOH . NA 8 HOH A 65 665 94 HOH HOH . NA 8 HOH A 66 666 31 HOH HOH . NA 8 HOH A 67 667 115 HOH HOH . NA 8 HOH A 68 668 71 HOH HOH . NA 8 HOH A 69 669 7 HOH HOH . NA 8 HOH A 70 670 104 HOH HOH . NA 8 HOH A 71 671 65 HOH HOH . NA 8 HOH A 72 672 153 HOH HOH . NA 8 HOH A 73 673 118 HOH HOH . NA 8 HOH A 74 674 149 HOH HOH . NA 8 HOH A 75 675 122 HOH HOH . NA 8 HOH A 76 676 159 HOH HOH . NA 8 HOH A 77 677 91 HOH HOH . NA 8 HOH A 78 678 56 HOH HOH . NA 8 HOH A 79 679 83 HOH HOH . NA 8 HOH A 80 680 112 HOH HOH . NA 8 HOH A 81 681 49 HOH HOH . NA 8 HOH A 82 682 116 HOH HOH . NA 8 HOH A 83 683 12 HOH HOH . NA 8 HOH A 84 684 126 HOH HOH . NA 8 HOH A 85 685 130 HOH HOH . NA 8 HOH A 86 686 69 HOH HOH . NA 8 HOH A 87 687 54 HOH HOH . NA 8 HOH A 88 688 68 HOH HOH . NA 8 HOH A 89 689 19 HOH HOH . NA 8 HOH A 90 690 156 HOH HOH . NA 8 HOH A 91 691 139 HOH HOH . NA 8 HOH A 92 692 133 HOH HOH . NA 8 HOH A 93 693 136 HOH HOH . NA 8 HOH A 94 694 128 HOH HOH . NA 8 HOH A 95 695 120 HOH HOH . NA 8 HOH A 96 696 132 HOH HOH . NA 8 HOH A 97 697 163 HOH HOH . NA 8 HOH A 98 698 148 HOH HOH . NA 8 HOH A 99 699 79 HOH HOH . NA 8 HOH A 100 700 165 HOH HOH . NA 8 HOH A 101 701 66 HOH HOH . NA 8 HOH A 102 702 99 HOH HOH . NA 8 HOH A 103 703 102 HOH HOH . NA 8 HOH A 104 704 135 HOH HOH . NA 8 HOH A 105 705 86 HOH HOH . NA 8 HOH A 106 706 77 HOH HOH . NA 8 HOH A 107 707 154 HOH HOH . NA 8 HOH A 108 708 151 HOH HOH . NA 8 HOH A 109 709 119 HOH HOH . NA 8 HOH A 110 710 67 HOH HOH . NA 8 HOH A 111 711 35 HOH HOH . NA 8 HOH A 112 712 24 HOH HOH . NA 8 HOH A 113 713 138 HOH HOH . NA 8 HOH A 114 714 158 HOH HOH . NA 8 HOH A 115 715 37 HOH HOH . NA 8 HOH A 116 716 95 HOH HOH . NA 8 HOH A 117 717 89 HOH HOH . NA 8 HOH A 118 718 64 HOH HOH . NA 8 HOH A 119 719 162 HOH HOH . NA 8 HOH A 120 720 36 HOH HOH . NA 8 HOH A 121 721 70 HOH HOH . NA 8 HOH A 122 722 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GTR . . . B 2 13.038 21.741 -8.818 1 31.35 ? C1 GTR 501 A 1 HETATM 2 C C2 GTR . . . B 2 13.726 20.493 -8.28 1 23.93 ? C2 GTR 501 A 1 HETATM 3 C C3 GTR . . . B 2 13.558 19.335 -9.247 1 26.85 ? C3 GTR 501 A 1 HETATM 4 C C4 GTR . . . B 2 12.085 19.047 -9.527 1 21.65 ? C4 GTR 501 A 1 HETATM 5 C C5 GTR . . . B 2 11.472 20.376 -9.949 1 25.97 ? C5 GTR 501 A 1 HETATM 6 C C6 GTR . . . B 2 10.005 20.245 -10.253 1 27.94 ? C6 GTR 501 A 1 HETATM 7 O O1 GTR . . . B 2 13.192 22.9 -7.999 1 31.83 ? O1 GTR 501 A 1 HETATM 8 O O2 GTR . . . B 2 15.101 20.768 -8.186 1 25.78 ? O2 GTR 501 A 1 HETATM 9 O O3 GTR . . . B 2 14.174 18.196 -8.687 1 27.67 ? O3 GTR 501 A 1 HETATM 10 O O4 GTR . . . B 2 11.499 18.458 -8.361 1 27.93 ? O4 GTR 501 A 1 HETATM 11 O O5 GTR . . . B 2 11.665 21.376 -8.95 1 29.14 ? O5 GTR 501 A 1 HETATM 12 O O6A GTR . . . B 2 9.711 19.476 -11.186 1 32.05 ? O6A GTR 501 A 1 HETATM 13 O O6B GTR . . . B 2 9.154 20.927 -9.619 1 26.08 ? O6B GTR 501 A 1 HETATM 14 H H1 GTR . . . B 2 13.506 22.03 -9.77 1 37.65 ? H1 GTR 501 A 1 HETATM 15 H H2 GTR . . . B 2 13.292 20.228 -7.306 1 28.75 ? H2 GTR 501 A 1 HETATM 16 H H3 GTR . . . B 2 14.031 19.593 -10.205 1 32.26 ? H3 GTR 501 A 1 HETATM 17 H H4 GTR . . . B 2 11.911 18.317 -10.33 1 26.02 ? H4 GTR 501 A 1 HETATM 18 H H5 GTR . . . B 2 11.992 20.668 -10.872 1 31.2 ? H5 GTR 501 A 1 HETATM 19 H HO1 GTR . . . B 2 12.384 23.045 -7.489 1 38.23 ? HO1 GTR 501 A 1 HETATM 20 H HO2 GTR . . . B 2 15.271 21.296 -7.394 1 30.97 ? HO2 GTR 501 A 1 HETATM 21 H HO3 GTR . . . B 2 14.587 18.434 -7.846 1 33.24 ? HO3 GTR 501 A 1 HETATM 22 H HO4 GTR . . . B 2 10.567 18.265 -8.531 1 33.55 ? HO4 GTR 501 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 155 _model_server_stats.create_model_time_ms 103 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #