data_6T0M # _model_server_result.job_id YVyMDqeMgQjOTVJhqFV4lA _model_server_result.datetime_utc '2024-11-19 18:20:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6T0M # _exptl.entry_id 6T0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T0M _cell.length_a 54.454 _cell.length_b 56.756 _cell.length_c 66.691 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 22 1_555 A SG CYS 160 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf2 A SG CYS 48 A CYS 42 1_555 A SG CYS 64 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 132 A CYS 128 1_555 A SG CYS 233 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 139 A CYS 136 1_555 A SG CYS 206 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 171 A CYS 168 1_555 A SG CYS 185 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf6 A SG CYS 196 A CYS 191 1_555 A SG CYS 220 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OE1 GLU 75 A GLU 70 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc2 A O ASN 77 A ASN 72 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A O VAL 80 A VAL 75 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc4 A OE2 GLU 85 A GLU 80 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 D CA CA . A CA 303 1_555 G O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc6 D CA CA . A CA 303 1_555 G O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6T0M _atom_sites.fract_transf_matrix[1][1] 0.018364 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017619 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 301 1 DMS DMS . C 2 DMS A 1 302 3 DMS DMS . D 3 CA A 1 303 1 CA CA . E 4 SO4 A 1 304 1 SO4 SO4 . F 5 GOZ A 1 305 1 GOZ 156 . G 6 HOH A 1 401 143 HOH HOH . G 6 HOH A 2 402 149 HOH HOH . G 6 HOH A 3 403 173 HOH HOH . G 6 HOH A 4 404 109 HOH HOH . G 6 HOH A 5 405 182 HOH HOH . G 6 HOH A 6 406 1 HOH HOH . G 6 HOH A 7 407 15 HOH HOH . G 6 HOH A 8 408 230 HOH HOH . G 6 HOH A 9 409 35 HOH HOH . G 6 HOH A 10 410 97 HOH HOH . G 6 HOH A 11 411 209 HOH HOH . G 6 HOH A 12 412 133 HOH HOH . G 6 HOH A 13 413 40 HOH HOH . G 6 HOH A 14 414 73 HOH HOH . G 6 HOH A 15 415 176 HOH HOH . G 6 HOH A 16 416 91 HOH HOH . G 6 HOH A 17 417 9 HOH HOH . G 6 HOH A 18 418 96 HOH HOH . G 6 HOH A 19 419 186 HOH HOH . G 6 HOH A 20 420 64 HOH HOH . G 6 HOH A 21 421 67 HOH HOH . G 6 HOH A 22 422 31 HOH HOH . G 6 HOH A 23 423 27 HOH HOH . G 6 HOH A 24 424 37 HOH HOH . G 6 HOH A 25 425 26 HOH HOH . G 6 HOH A 26 426 215 HOH HOH . G 6 HOH A 27 427 70 HOH HOH . G 6 HOH A 28 428 57 HOH HOH . G 6 HOH A 29 429 104 HOH HOH . G 6 HOH A 30 430 223 HOH HOH . G 6 HOH A 31 431 126 HOH HOH . G 6 HOH A 32 432 195 HOH HOH . G 6 HOH A 33 433 105 HOH HOH . G 6 HOH A 34 434 51 HOH HOH . G 6 HOH A 35 435 145 HOH HOH . G 6 HOH A 36 436 125 HOH HOH . G 6 HOH A 37 437 25 HOH HOH . G 6 HOH A 38 438 129 HOH HOH . G 6 HOH A 39 439 134 HOH HOH . G 6 HOH A 40 440 226 HOH HOH . G 6 HOH A 41 441 92 HOH HOH . G 6 HOH A 42 442 157 HOH HOH . G 6 HOH A 43 443 98 HOH HOH . G 6 HOH A 44 444 19 HOH HOH . G 6 HOH A 45 445 139 HOH HOH . G 6 HOH A 46 446 205 HOH HOH . G 6 HOH A 47 447 21 HOH HOH . G 6 HOH A 48 448 116 HOH HOH . G 6 HOH A 49 449 3 HOH HOH . G 6 HOH A 50 450 16 HOH HOH . G 6 HOH A 51 451 58 HOH HOH . G 6 HOH A 52 452 4 HOH HOH . G 6 HOH A 53 453 148 HOH HOH . G 6 HOH A 54 454 88 HOH HOH . G 6 HOH A 55 455 53 HOH HOH . G 6 HOH A 56 456 107 HOH HOH . G 6 HOH A 57 457 29 HOH HOH . G 6 HOH A 58 458 2 HOH HOH . G 6 HOH A 59 459 12 HOH HOH . G 6 HOH A 60 460 43 HOH HOH . G 6 HOH A 61 461 45 HOH HOH . G 6 HOH A 62 462 32 HOH HOH . G 6 HOH A 63 463 41 HOH HOH . G 6 HOH A 64 464 144 HOH HOH . G 6 HOH A 65 465 163 HOH HOH . G 6 HOH A 66 466 49 HOH HOH . G 6 HOH A 67 467 6 HOH HOH . G 6 HOH A 68 468 203 HOH HOH . G 6 HOH A 69 469 81 HOH HOH . G 6 HOH A 70 470 200 HOH HOH . G 6 HOH A 71 471 102 HOH HOH . G 6 HOH A 72 472 101 HOH HOH . G 6 HOH A 73 473 23 HOH HOH . G 6 HOH A 74 474 28 HOH HOH . G 6 HOH A 75 475 124 HOH HOH . G 6 HOH A 76 476 5 HOH HOH . G 6 HOH A 77 477 231 HOH HOH . G 6 HOH A 78 478 123 HOH HOH . G 6 HOH A 79 479 76 HOH HOH . G 6 HOH A 80 480 18 HOH HOH . G 6 HOH A 81 481 94 HOH HOH . G 6 HOH A 82 482 201 HOH HOH . G 6 HOH A 83 483 11 HOH HOH . G 6 HOH A 84 484 225 HOH HOH . G 6 HOH A 85 485 183 HOH HOH . G 6 HOH A 86 486 89 HOH HOH . G 6 HOH A 87 487 63 HOH HOH . G 6 HOH A 88 488 50 HOH HOH . G 6 HOH A 89 489 150 HOH HOH . G 6 HOH A 90 490 55 HOH HOH . G 6 HOH A 91 491 61 HOH HOH . G 6 HOH A 92 492 24 HOH HOH . G 6 HOH A 93 493 59 HOH HOH . G 6 HOH A 94 494 60 HOH HOH . G 6 HOH A 95 495 85 HOH HOH . G 6 HOH A 96 496 90 HOH HOH . G 6 HOH A 97 497 211 HOH HOH . G 6 HOH A 98 498 177 HOH HOH . G 6 HOH A 99 499 152 HOH HOH . G 6 HOH A 100 500 69 HOH HOH . G 6 HOH A 101 501 74 HOH HOH . G 6 HOH A 102 502 103 HOH HOH . G 6 HOH A 103 503 122 HOH HOH . G 6 HOH A 104 504 194 HOH HOH . G 6 HOH A 105 505 20 HOH HOH . G 6 HOH A 106 506 52 HOH HOH . G 6 HOH A 107 507 17 HOH HOH . G 6 HOH A 108 508 30 HOH HOH . G 6 HOH A 109 509 38 HOH HOH . G 6 HOH A 110 510 141 HOH HOH . G 6 HOH A 111 511 13 HOH HOH . G 6 HOH A 112 512 34 HOH HOH . G 6 HOH A 113 513 204 HOH HOH . G 6 HOH A 114 514 78 HOH HOH . G 6 HOH A 115 515 83 HOH HOH . G 6 HOH A 116 516 87 HOH HOH . G 6 HOH A 117 517 118 HOH HOH . G 6 HOH A 118 518 75 HOH HOH . G 6 HOH A 119 519 95 HOH HOH . G 6 HOH A 120 520 229 HOH HOH . G 6 HOH A 121 521 128 HOH HOH . G 6 HOH A 122 522 47 HOH HOH . G 6 HOH A 123 523 48 HOH HOH . G 6 HOH A 124 524 62 HOH HOH . G 6 HOH A 125 525 114 HOH HOH . G 6 HOH A 126 526 39 HOH HOH . G 6 HOH A 127 527 84 HOH HOH . G 6 HOH A 128 528 199 HOH HOH . G 6 HOH A 129 529 189 HOH HOH . G 6 HOH A 130 530 93 HOH HOH . G 6 HOH A 131 531 8 HOH HOH . G 6 HOH A 132 532 68 HOH HOH . G 6 HOH A 133 533 151 HOH HOH . G 6 HOH A 134 534 207 HOH HOH . G 6 HOH A 135 535 227 HOH HOH . G 6 HOH A 136 536 175 HOH HOH . G 6 HOH A 137 537 14 HOH HOH . G 6 HOH A 138 538 218 HOH HOH . G 6 HOH A 139 539 22 HOH HOH . G 6 HOH A 140 540 115 HOH HOH . G 6 HOH A 141 541 80 HOH HOH . G 6 HOH A 142 542 33 HOH HOH . G 6 HOH A 143 543 10 HOH HOH . G 6 HOH A 144 544 82 HOH HOH . G 6 HOH A 145 545 238 HOH HOH . G 6 HOH A 146 546 232 HOH HOH . G 6 HOH A 147 547 121 HOH HOH . G 6 HOH A 148 548 156 HOH HOH . G 6 HOH A 149 549 36 HOH HOH . G 6 HOH A 150 550 172 HOH HOH . G 6 HOH A 151 551 108 HOH HOH . G 6 HOH A 152 552 146 HOH HOH . G 6 HOH A 153 553 234 HOH HOH . G 6 HOH A 154 554 155 HOH HOH . G 6 HOH A 155 555 106 HOH HOH . G 6 HOH A 156 556 65 HOH HOH . G 6 HOH A 157 557 213 HOH HOH . G 6 HOH A 158 558 179 HOH HOH . G 6 HOH A 159 559 120 HOH HOH . G 6 HOH A 160 560 222 HOH HOH . G 6 HOH A 161 561 192 HOH HOH . G 6 HOH A 162 562 140 HOH HOH . G 6 HOH A 163 563 161 HOH HOH . G 6 HOH A 164 564 197 HOH HOH . G 6 HOH A 165 565 113 HOH HOH . G 6 HOH A 166 566 71 HOH HOH . G 6 HOH A 167 567 198 HOH HOH . G 6 HOH A 168 568 171 HOH HOH . G 6 HOH A 169 569 110 HOH HOH . G 6 HOH A 170 570 221 HOH HOH . G 6 HOH A 171 571 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.228 _atom_site.Cartn_y -24.107 _atom_site.Cartn_z -3.749 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #