data_6T0P # _model_server_result.job_id sBeMlFYxDsMK8oZfftYmPg _model_server_result.datetime_utc '2024-11-13 11:30:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 6T0P # _exptl.entry_id 6T0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T0P _cell.length_a 54.568 _cell.length_b 56.684 _cell.length_c 66.647 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 22 1_555 A SG CYS 160 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 48 A CYS 42 1_555 A SG CYS 64 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf3 A SG CYS 132 A CYS 128 1_555 A SG CYS 233 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 139 A CYS 136 1_555 A SG CYS 206 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 171 A CYS 168 1_555 A SG CYS 185 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 A SG CYS 196 A CYS 191 1_555 A SG CYS 220 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A OE1 GLU 75 A GLU 70 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 A O ASN 77 A ASN 72 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc3 A O VAL 80 A VAL 75 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 A OE2 GLU 85 A GLU 80 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc5 B CA CA . A CA 301 1_555 G O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 B CA CA . A CA 301 1_555 G O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6T0P _atom_sites.fract_transf_matrix[1][1] 0.018326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017642 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 DMS A 1 302 2 DMS DMS . D 3 DMS A 1 303 3 DMS DMS . E 4 M6Q A 1 304 3 M6Q XXX . F 5 SO4 A 1 305 1 SO4 SO4 . G 6 HOH A 1 401 282 HOH HOH . G 6 HOH A 2 402 267 HOH HOH . G 6 HOH A 3 403 125 HOH HOH . G 6 HOH A 4 404 126 HOH HOH . G 6 HOH A 5 405 8 HOH HOH . G 6 HOH A 6 406 167 HOH HOH . G 6 HOH A 7 407 48 HOH HOH . G 6 HOH A 8 408 26 HOH HOH . G 6 HOH A 9 409 3 HOH HOH . G 6 HOH A 10 410 198 HOH HOH . G 6 HOH A 11 411 121 HOH HOH . G 6 HOH A 12 412 82 HOH HOH . G 6 HOH A 13 413 268 HOH HOH . G 6 HOH A 14 414 141 HOH HOH . G 6 HOH A 15 415 285 HOH HOH . G 6 HOH A 16 416 89 HOH HOH . G 6 HOH A 17 417 266 HOH HOH . G 6 HOH A 18 418 113 HOH HOH . G 6 HOH A 19 419 142 HOH HOH . G 6 HOH A 20 420 127 HOH HOH . G 6 HOH A 21 421 40 HOH HOH . G 6 HOH A 22 422 197 HOH HOH . G 6 HOH A 23 423 209 HOH HOH . G 6 HOH A 24 424 63 HOH HOH . G 6 HOH A 25 425 37 HOH HOH . G 6 HOH A 26 426 153 HOH HOH . G 6 HOH A 27 427 38 HOH HOH . G 6 HOH A 28 428 286 HOH HOH . G 6 HOH A 29 429 51 HOH HOH . G 6 HOH A 30 430 225 HOH HOH . G 6 HOH A 31 431 289 HOH HOH . G 6 HOH A 32 432 52 HOH HOH . G 6 HOH A 33 433 124 HOH HOH . G 6 HOH A 34 434 133 HOH HOH . G 6 HOH A 35 435 122 HOH HOH . G 6 HOH A 36 436 28 HOH HOH . G 6 HOH A 37 437 90 HOH HOH . G 6 HOH A 38 438 108 HOH HOH . G 6 HOH A 39 439 150 HOH HOH . G 6 HOH A 40 440 29 HOH HOH . G 6 HOH A 41 441 95 HOH HOH . G 6 HOH A 42 442 30 HOH HOH . G 6 HOH A 43 443 58 HOH HOH . G 6 HOH A 44 444 15 HOH HOH . G 6 HOH A 45 445 66 HOH HOH . G 6 HOH A 46 446 2 HOH HOH . G 6 HOH A 47 447 275 HOH HOH . G 6 HOH A 48 448 87 HOH HOH . G 6 HOH A 49 449 5 HOH HOH . G 6 HOH A 50 450 195 HOH HOH . G 6 HOH A 51 451 4 HOH HOH . G 6 HOH A 52 452 12 HOH HOH . G 6 HOH A 53 453 1 HOH HOH . G 6 HOH A 54 454 170 HOH HOH . G 6 HOH A 55 455 144 HOH HOH . G 6 HOH A 56 456 114 HOH HOH . G 6 HOH A 57 457 33 HOH HOH . G 6 HOH A 58 458 10 HOH HOH . G 6 HOH A 59 459 44 HOH HOH . G 6 HOH A 60 460 85 HOH HOH . G 6 HOH A 61 461 165 HOH HOH . G 6 HOH A 62 462 235 HOH HOH . G 6 HOH A 63 463 110 HOH HOH . G 6 HOH A 64 464 218 HOH HOH . G 6 HOH A 65 465 265 HOH HOH . G 6 HOH A 66 466 76 HOH HOH . G 6 HOH A 67 467 156 HOH HOH . G 6 HOH A 68 468 157 HOH HOH . G 6 HOH A 69 469 53 HOH HOH . G 6 HOH A 70 470 186 HOH HOH . G 6 HOH A 71 471 20 HOH HOH . G 6 HOH A 72 472 6 HOH HOH . G 6 HOH A 73 473 106 HOH HOH . G 6 HOH A 74 474 179 HOH HOH . G 6 HOH A 75 475 270 HOH HOH . G 6 HOH A 76 476 32 HOH HOH . G 6 HOH A 77 477 255 HOH HOH . G 6 HOH A 78 478 68 HOH HOH . G 6 HOH A 79 479 41 HOH HOH . G 6 HOH A 80 480 19 HOH HOH . G 6 HOH A 81 481 45 HOH HOH . G 6 HOH A 82 482 249 HOH HOH . G 6 HOH A 83 483 80 HOH HOH . G 6 HOH A 84 484 21 HOH HOH . G 6 HOH A 85 485 17 HOH HOH . G 6 HOH A 86 486 92 HOH HOH . G 6 HOH A 87 487 42 HOH HOH . G 6 HOH A 88 488 88 HOH HOH . G 6 HOH A 89 489 62 HOH HOH . G 6 HOH A 90 490 111 HOH HOH . G 6 HOH A 91 491 54 HOH HOH . G 6 HOH A 92 492 18 HOH HOH . G 6 HOH A 93 493 75 HOH HOH . G 6 HOH A 94 494 72 HOH HOH . G 6 HOH A 95 495 25 HOH HOH . G 6 HOH A 96 496 213 HOH HOH . G 6 HOH A 97 497 130 HOH HOH . G 6 HOH A 98 498 60 HOH HOH . G 6 HOH A 99 499 143 HOH HOH . G 6 HOH A 100 500 23 HOH HOH . G 6 HOH A 101 501 16 HOH HOH . G 6 HOH A 102 502 148 HOH HOH . G 6 HOH A 103 503 59 HOH HOH . G 6 HOH A 104 504 290 HOH HOH . G 6 HOH A 105 505 9 HOH HOH . G 6 HOH A 106 506 70 HOH HOH . G 6 HOH A 107 507 280 HOH HOH . G 6 HOH A 108 508 284 HOH HOH . G 6 HOH A 109 509 47 HOH HOH . G 6 HOH A 110 510 100 HOH HOH . G 6 HOH A 111 511 207 HOH HOH . G 6 HOH A 112 512 98 HOH HOH . G 6 HOH A 113 513 109 HOH HOH . G 6 HOH A 114 514 94 HOH HOH . G 6 HOH A 115 515 238 HOH HOH . G 6 HOH A 116 516 281 HOH HOH . G 6 HOH A 117 517 233 HOH HOH . G 6 HOH A 118 518 11 HOH HOH . G 6 HOH A 119 519 138 HOH HOH . G 6 HOH A 120 520 149 HOH HOH . G 6 HOH A 121 521 164 HOH HOH . G 6 HOH A 122 522 73 HOH HOH . G 6 HOH A 123 523 14 HOH HOH . G 6 HOH A 124 524 74 HOH HOH . G 6 HOH A 125 525 13 HOH HOH . G 6 HOH A 126 526 273 HOH HOH . G 6 HOH A 127 527 79 HOH HOH . G 6 HOH A 128 528 152 HOH HOH . G 6 HOH A 129 529 56 HOH HOH . G 6 HOH A 130 530 83 HOH HOH . G 6 HOH A 131 531 55 HOH HOH . G 6 HOH A 132 532 136 HOH HOH . G 6 HOH A 133 533 96 HOH HOH . G 6 HOH A 134 534 36 HOH HOH . G 6 HOH A 135 535 102 HOH HOH . G 6 HOH A 136 536 64 HOH HOH . G 6 HOH A 137 537 39 HOH HOH . G 6 HOH A 138 538 107 HOH HOH . G 6 HOH A 139 539 104 HOH HOH . G 6 HOH A 140 540 71 HOH HOH . G 6 HOH A 141 541 205 HOH HOH . G 6 HOH A 142 542 250 HOH HOH . G 6 HOH A 143 543 69 HOH HOH . G 6 HOH A 144 544 137 HOH HOH . G 6 HOH A 145 545 180 HOH HOH . G 6 HOH A 146 546 97 HOH HOH . G 6 HOH A 147 547 22 HOH HOH . G 6 HOH A 148 548 163 HOH HOH . G 6 HOH A 149 549 288 HOH HOH . G 6 HOH A 150 550 81 HOH HOH . G 6 HOH A 151 551 117 HOH HOH . G 6 HOH A 152 552 261 HOH HOH . G 6 HOH A 153 553 287 HOH HOH . G 6 HOH A 154 554 105 HOH HOH . G 6 HOH A 155 555 264 HOH HOH . G 6 HOH A 156 556 35 HOH HOH . G 6 HOH A 157 557 210 HOH HOH . G 6 HOH A 158 558 93 HOH HOH . G 6 HOH A 159 559 77 HOH HOH . G 6 HOH A 160 560 46 HOH HOH . G 6 HOH A 161 561 277 HOH HOH . G 6 HOH A 162 562 50 HOH HOH . G 6 HOH A 163 563 67 HOH HOH . G 6 HOH A 164 564 274 HOH HOH . G 6 HOH A 165 565 258 HOH HOH . G 6 HOH A 166 566 27 HOH HOH . G 6 HOH A 167 567 219 HOH HOH . G 6 HOH A 168 568 291 HOH HOH . G 6 HOH A 169 569 78 HOH HOH . G 6 HOH A 170 570 269 HOH HOH . G 6 HOH A 171 571 181 HOH HOH . G 6 HOH A 172 572 118 HOH HOH . G 6 HOH A 173 573 196 HOH HOH . G 6 HOH A 174 574 217 HOH HOH . G 6 HOH A 175 575 256 HOH HOH . G 6 HOH A 176 576 283 HOH HOH . G 6 HOH A 177 577 161 HOH HOH . G 6 HOH A 178 578 231 HOH HOH . G 6 HOH A 179 579 86 HOH HOH . G 6 HOH A 180 580 154 HOH HOH . G 6 HOH A 181 581 168 HOH HOH . G 6 HOH A 182 582 228 HOH HOH . G 6 HOH A 183 583 140 HOH HOH . G 6 HOH A 184 584 206 HOH HOH . G 6 HOH A 185 585 57 HOH HOH . G 6 HOH A 186 586 271 HOH HOH . G 6 HOH A 187 587 120 HOH HOH . G 6 HOH A 188 588 236 HOH HOH . G 6 HOH A 189 589 147 HOH HOH . G 6 HOH A 190 590 199 HOH HOH . G 6 HOH A 191 591 203 HOH HOH . G 6 HOH A 192 592 272 HOH HOH . G 6 HOH A 193 593 276 HOH HOH . G 6 HOH A 194 594 84 HOH HOH . G 6 HOH A 195 595 187 HOH HOH . G 6 HOH A 196 596 115 HOH HOH . G 6 HOH A 197 597 184 HOH HOH . G 6 HOH A 198 598 151 HOH HOH . G 6 HOH A 199 599 251 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 10.962 -19.284 -6.063 1 15.34 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 9.644 -19.921 -6.347 1 14.28 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 11.633 -18.718 -7.653 1 17.82 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 10.691 -17.648 -5.334 1 14.02 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #