data_6T15 # _model_server_result.job_id '_G2GRcQswWTNs8RZaR8ilA' _model_server_result.datetime_utc '2025-03-04 08:10:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XB","auth_seq_id":200}' # _entry.id 6T15 # _exptl.entry_id 6T15 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 34 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T15 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 34 _struct_asym.id XB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 134 E CYS 164 1_555 E SG CYS 150 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 101 F CYS 101 1_555 F SG CYS 123 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 O SG CYS 134 P CYS 164 1_555 O SG CYS 150 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 P SG CYS 101 Q CYS 101 1_555 P SG CYS 123 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 DA SG CYS 26 j CYS 27 1_555 DA SG CYS 58 j CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf6 DA SG CYS 36 j CYS 37 1_555 DA SG CYS 47 j CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A CE MET 429 A MET 455 1_555 KA OB7 CDL . C CDL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale2 A CE3 TRP 431 A TRP 457 1_555 HA O5 PEF . A PEF 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale3 C NH2 ARG 4 C ARG 4 1_555 KA OB4 CDL . C CDL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 IA FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 JA FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 IA FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 JA FE HEM . C HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? covale ? covale4 C NE2 HIS 222 C HIS 222 1_555 KA C71 CDL . C CDL 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 D SG CYS 40 D CYS 101 1_555 OA CAB HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale6 D SG CYS 43 D CYS 104 1_555 OA CAC HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 OA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? covale ? covale7 D NH1 ARG 123 D ARG 184 1_555 OA O1A HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc6 D SD MET 164 D MET 225 1_555 OA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc7 E SG CYS 129 E CYS 159 1_555 QA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc8 E ND1 HIS 131 E HIS 161 1_555 QA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc9 E SG CYS 148 E CYS 178 1_555 QA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc10 E ND1 HIS 151 E HIS 181 1_555 QA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? covale ? covale8 K CE3 TRP 431 L TRP 457 1_555 XA C31 PEF . L PEF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? metalc ? metalc11 M NE2 HIS 82 N HIS 82 1_555 YA FE HEM . N HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc12 M NE2 HIS 96 N HIS 96 1_555 ZA FE HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc13 M NE2 HIS 183 N HIS 183 1_555 YA FE HEM . N HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc14 M NE2 HIS 197 N HIS 197 1_555 ZA FE HEM . N HEM 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? covale ? covale9 N SG CYS 40 O CYS 101 1_555 EB C3B HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? covale ? covale10 N SG CYS 40 O CYS 101 1_555 EB CAB HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? covale ? covale11 N SG CYS 43 O CYS 104 1_555 EB CAC HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc15 N NE2 HIS 44 O HIS 105 1_555 EB FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? covale ? covale12 N NH1 ARG 123 O ARG 184 1_555 EB O1A HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? metalc ? metalc16 N SD MET 164 O MET 225 1_555 EB FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc17 O SG CYS 129 P CYS 159 1_555 GB FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc18 O ND1 HIS 131 P HIS 161 1_555 GB FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc19 O SG CYS 148 P CYS 178 1_555 GB FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc20 O ND1 HIS 151 P HIS 181 1_555 GB FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? covale ? covale13 R N HIS 42 S HIS 42 1_555 KB O14 PCF . S PCF 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? covale ? covale14 U OG SER 33 a SER 33 1_555 OB C2B HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? metalc ? metalc21 U NE2 HIS 62 a HIS 62 1_555 OB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? covale ? covale15 U NH1 ARG 97 a ARG 97 1_555 RB O1P PEF . a PEF 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc22 U ND1 HIS 241 a HIS 241 1_555 NB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? covale ? covale16 U CG2 VAL 244 a VAL 244 1_555 PB CAC HEA . a HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? metalc ? metalc23 U NE2 HIS 290 a HIS 290 1_555 NB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc24 U NE2 HIS 291 a HIS 291 1_555 NB CU CU . a CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc25 U OD1 ASP 369 a ASP 369 1_555 QB MG MG . a MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc26 U OD2 ASP 369 a ASP 369 1_555 QB MG MG . a MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc27 U NE2 HIS 376 a HIS 376 1_555 PB FE HEA . a HEA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc28 U NE2 HIS 378 a HIS 378 1_555 OB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? covale ? covale17 U CD2 LEU 389 a LEU 389 1_555 OB C24 HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? metalc ? metalc29 V ND1 HIS 171 b HIS 186 1_555 SB CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc30 V SG CYS 206 b CYS 221 1_555 SB CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc31 V SG CYS 206 b CYS 221 1_555 SB CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc32 V O GLU 208 b GLU 223 1_555 SB CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc33 V OE2 GLU 208 b GLU 223 1_555 QB MG MG . a MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc34 V SG CYS 210 b CYS 225 1_555 SB CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc35 V SG CYS 210 b CYS 225 1_555 SB CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc36 V ND1 HIS 214 b HIS 229 1_555 SB CU2 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc37 V SD MET 217 b MET 232 1_555 SB CU1 CUA . b CUA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc38 X SG CYS 86 d CYS 111 1_555 XB ZN ZN . d ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc39 X NE2 HIS 94 d HIS 119 1_555 XB ZN ZN . d ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc40 X SG CYS 109 d CYS 134 1_555 XB ZN ZN . d ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? covale ? covale18 Y CE2 PHE 87 e PHE 104 1_555 ZB C28 PCF . e PCF 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? covale ? covale19 LA N PEF . C PEF 604 1_555 UA O12 PCF . I PCF 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale20 AB C17 CDL . N CDL 603 1_555 FB OB9 CDL . O CDL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale21 U ND1 HIS 241 a HIS 241 1_555 U CE2 TYR 245 a TYR 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6T15 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code HA 24 PEF A 1 501 608 PEF PEF . IA 25 HEM C 1 601 601 HEM HEM . JA 25 HEM C 1 602 602 HEM HEM . KA 26 CDL C 1 603 604 CDL CDL . LA 24 PEF C 1 604 606 PEF PEF . MA 24 PEF C 1 605 607 PEF PEF . NA 27 PCF C 1 606 613 PCF PCF . OA 28 HEC D 1 401 603 HEC HEC . PA 26 CDL D 1 402 602 CDL CDL . QA 29 FES E 1 301 504 FES FES . RA 24 PEF E 1 302 605 PEF PEF . SA 26 CDL H 1 601 601 CDL CDL . TA 24 PEF H 1 602 609 PEF PEF . UA 27 PCF I 1 101 612 PCF PCF . VA 24 PEF J 1 101 610 PEF PEF . WA 26 CDL L 1 501 604 CDL CDL . XA 24 PEF L 1 502 608 PEF PEF . YA 25 HEM N 1 601 601 HEM HEM . ZA 25 HEM N 1 602 602 HEM HEM . AB 26 CDL N 1 603 601 CDL CDL . BB 24 PEF N 1 604 606 PEF PEF . CB 24 PEF N 1 605 607 PEF PEF . DB 27 PCF N 1 606 613 PCF PCF . EB 28 HEC O 1 401 603 HEC HEC . FB 26 CDL O 1 402 602 CDL CDL . GB 29 FES P 1 301 504 FES FES . HB 24 PEF P 1 302 605 PEF PEF . IB 26 CDL S 1 101 603 CDL CDL . JB 24 PEF S 1 102 609 PEF PEF . KB 27 PCF S 1 103 611 PCF PCF . LB 27 PCF T 1 101 612 PCF PCF . MB 24 PEF U 1 101 610 PEF PEF . NB 30 CU a 1 601 535 CU CU . OB 31 HEA a 1 602 601 HEA HEA . PB 31 HEA a 1 603 602 HEA HEA . QB 32 MG a 1 604 702 MG MG . RB 24 PEF a 1 605 604 PEF PEF . SB 33 CUA b 1 301 252 CUA CUA . TB 24 PEF b 1 302 602 PEF PEF . UB 24 PEF b 1 303 603 PEF PEF . VB 24 PEF c 1 301 605 PEF PEF . WB 24 PEF c 1 302 606 PEF PEF . XB 34 ZN d 1 200 200 ZN ZN . YB 24 PEF e 1 201 607 PEF PEF . ZB 27 PCF e 1 202 609 PCF PCF . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id XB _atom_site.label_entity_id 34 _atom_site.Cartn_x 189.274 _atom_site.Cartn_y 238.18 _atom_site.Cartn_z 255.211 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 117 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 200 _atom_site.auth_asym_id d _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 547 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #