data_6T1E # _model_server_result.job_id wC5Ebny07VPu6xFrX5Pcew _model_server_result.datetime_utc '2024-11-17 07:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6T1E # _exptl.entry_id 6T1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T1E _cell.length_a 57.511 _cell.length_b 57.511 _cell.length_c 174.663 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.511 57.511 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.511 57.511 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 122 n n C1 C2 GOL sing 123 n n C1 H11 GOL sing 124 n n C1 H12 GOL sing 125 n n O1 HO1 GOL sing 126 n n C2 O2 GOL sing 127 n n C2 C3 GOL sing 128 n n C2 H2 GOL sing 129 n n O2 HO2 GOL sing 130 n n C3 O3 GOL sing 131 n n C3 H31 GOL sing 132 n n C3 H32 GOL sing 133 n n O3 HO3 GOL sing 134 n n # _atom_sites.entry_id 6T1E _atom_sites.fract_transf_matrix[1][1] 0.017388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005725 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 2 GOL A 1 402 501 GOL GOL . D 2 GOL A 1 403 701 GOL GOL . E 3 ACT A 1 404 901 ACT ACT . F 4 HL9 A 1 405 1001 HL9 HL9 . G 5 CL A 1 406 1101 CL CL . H 6 HOH A 1 501 96 HOH HOH . H 6 HOH A 2 502 84 HOH HOH . H 6 HOH A 3 503 35 HOH HOH . H 6 HOH A 4 504 51 HOH HOH . H 6 HOH A 5 505 63 HOH HOH . H 6 HOH A 6 506 66 HOH HOH . H 6 HOH A 7 507 71 HOH HOH . H 6 HOH A 8 508 25 HOH HOH . H 6 HOH A 9 509 13 HOH HOH . H 6 HOH A 10 510 61 HOH HOH . H 6 HOH A 11 511 159 HOH HOH . H 6 HOH A 12 512 144 HOH HOH . H 6 HOH A 13 513 77 HOH HOH . H 6 HOH A 14 514 113 HOH HOH . H 6 HOH A 15 515 54 HOH HOH . H 6 HOH A 16 516 127 HOH HOH . H 6 HOH A 17 517 3 HOH HOH . H 6 HOH A 18 518 2 HOH HOH . H 6 HOH A 19 519 20 HOH HOH . H 6 HOH A 20 520 143 HOH HOH . H 6 HOH A 21 521 65 HOH HOH . H 6 HOH A 22 522 107 HOH HOH . H 6 HOH A 23 523 1 HOH HOH . H 6 HOH A 24 524 14 HOH HOH . H 6 HOH A 25 525 6 HOH HOH . H 6 HOH A 26 526 22 HOH HOH . H 6 HOH A 27 527 74 HOH HOH . H 6 HOH A 28 528 27 HOH HOH . H 6 HOH A 29 529 75 HOH HOH . H 6 HOH A 30 530 41 HOH HOH . H 6 HOH A 31 531 42 HOH HOH . H 6 HOH A 32 532 50 HOH HOH . H 6 HOH A 33 533 24 HOH HOH . H 6 HOH A 34 534 16 HOH HOH . H 6 HOH A 35 535 69 HOH HOH . H 6 HOH A 36 536 5 HOH HOH . H 6 HOH A 37 537 33 HOH HOH . H 6 HOH A 38 538 23 HOH HOH . H 6 HOH A 39 539 18 HOH HOH . H 6 HOH A 40 540 62 HOH HOH . H 6 HOH A 41 541 11 HOH HOH . H 6 HOH A 42 542 4 HOH HOH . H 6 HOH A 43 543 86 HOH HOH . H 6 HOH A 44 544 125 HOH HOH . H 6 HOH A 45 545 38 HOH HOH . H 6 HOH A 46 546 7 HOH HOH . H 6 HOH A 47 547 126 HOH HOH . H 6 HOH A 48 548 10 HOH HOH . H 6 HOH A 49 549 19 HOH HOH . H 6 HOH A 50 550 53 HOH HOH . H 6 HOH A 51 551 17 HOH HOH . H 6 HOH A 52 552 92 HOH HOH . H 6 HOH A 53 553 44 HOH HOH . H 6 HOH A 54 554 21 HOH HOH . H 6 HOH A 55 555 28 HOH HOH . H 6 HOH A 56 556 60 HOH HOH . H 6 HOH A 57 557 164 HOH HOH . H 6 HOH A 58 558 30 HOH HOH . H 6 HOH A 59 559 29 HOH HOH . H 6 HOH A 60 560 123 HOH HOH . H 6 HOH A 61 561 15 HOH HOH . H 6 HOH A 62 562 8 HOH HOH . H 6 HOH A 63 563 135 HOH HOH . H 6 HOH A 64 564 34 HOH HOH . H 6 HOH A 65 565 152 HOH HOH . H 6 HOH A 66 566 47 HOH HOH . H 6 HOH A 67 567 52 HOH HOH . H 6 HOH A 68 568 12 HOH HOH . H 6 HOH A 69 569 133 HOH HOH . H 6 HOH A 70 570 26 HOH HOH . H 6 HOH A 71 571 40 HOH HOH . H 6 HOH A 72 572 72 HOH HOH . H 6 HOH A 73 573 9 HOH HOH . H 6 HOH A 74 574 121 HOH HOH . H 6 HOH A 75 575 78 HOH HOH . H 6 HOH A 76 576 37 HOH HOH . H 6 HOH A 77 577 134 HOH HOH . H 6 HOH A 78 578 31 HOH HOH . H 6 HOH A 79 579 55 HOH HOH . H 6 HOH A 80 580 32 HOH HOH . H 6 HOH A 81 581 168 HOH HOH . H 6 HOH A 82 582 58 HOH HOH . H 6 HOH A 83 583 118 HOH HOH . H 6 HOH A 84 584 43 HOH HOH . H 6 HOH A 85 585 49 HOH HOH . H 6 HOH A 86 586 170 HOH HOH . H 6 HOH A 87 587 64 HOH HOH . H 6 HOH A 88 588 139 HOH HOH . H 6 HOH A 89 589 57 HOH HOH . H 6 HOH A 90 590 175 HOH HOH . H 6 HOH A 91 591 174 HOH HOH . H 6 HOH A 92 592 97 HOH HOH . H 6 HOH A 93 593 76 HOH HOH . H 6 HOH A 94 594 129 HOH HOH . H 6 HOH A 95 595 94 HOH HOH . H 6 HOH A 96 596 108 HOH HOH . H 6 HOH A 97 597 103 HOH HOH . H 6 HOH A 98 598 83 HOH HOH . H 6 HOH A 99 599 110 HOH HOH . H 6 HOH A 100 600 104 HOH HOH . H 6 HOH A 101 601 82 HOH HOH . H 6 HOH A 102 602 131 HOH HOH . H 6 HOH A 103 603 67 HOH HOH . H 6 HOH A 104 604 172 HOH HOH . H 6 HOH A 105 605 176 HOH HOH . H 6 HOH A 106 606 136 HOH HOH . H 6 HOH A 107 607 48 HOH HOH . H 6 HOH A 108 608 151 HOH HOH . H 6 HOH A 109 609 122 HOH HOH . H 6 HOH A 110 610 80 HOH HOH . H 6 HOH A 111 611 81 HOH HOH . H 6 HOH A 112 612 73 HOH HOH . H 6 HOH A 113 613 165 HOH HOH . H 6 HOH A 114 614 105 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 13.921 15.184 -20.713 0.46 36.29 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 14.529 14.775 -19.488 0.46 38.78 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 14.982 15.143 -21.79 0.46 35.34 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 15.609 13.937 -21.828 0.46 37.23 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 14.208 15.453 -23.066 0.46 32.71 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 13.942 14.25 -23.803 0.46 31.57 ? O3 GOL 401 A 1 HETATM 7 H H11 GOL . . . B 2 13.184 14.609 -20.972 0.46 43.54 ? H11 GOL 401 A 1 HETATM 8 H H12 GOL . . . B 2 13.554 16.081 -20.664 0.46 43.54 ? H12 GOL 401 A 1 HETATM 9 H HO1 GOL . . . B 2 15.137 14.212 -19.702 0.46 46.54 ? HO1 GOL 401 A 1 HETATM 10 H H2 GOL . . . B 2 15.684 15.794 -21.635 0.46 42.41 ? H2 GOL 401 A 1 HETATM 11 H HO2 GOL . . . B 2 15.745 13.747 -22.65 0.46 44.68 ? HO2 GOL 401 A 1 HETATM 12 H H31 GOL . . . B 2 14.727 16.095 -23.576 0.46 39.25 ? H31 GOL 401 A 1 HETATM 13 H H32 GOL . . . B 2 13.398 15.922 -22.813 0.46 39.25 ? H32 GOL 401 A 1 HETATM 14 H HO3 GOL . . . B 2 13.209 13.939 -23.513 0.46 37.89 ? HO3 GOL 401 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 386 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #