data_6T1G # _model_server_result.job_id E-n4s0Fuk4ebkTHWw36C6Q _model_server_result.datetime_utc '2024-11-17 21:58:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6T1G # _exptl.entry_id 6T1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T1G _cell.length_a 55.226 _cell.length_b 55.226 _cell.length_c 168.478 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall 'P 4cw 2c' _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -55.226 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H29 N5 O2 S' _chem_comp.formula_weight 403.542 _chem_comp.id HL9 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C25 HL9 doub 146 n y C28 N13 HL9 sing 147 n y C25 C24 HL9 sing 148 n y N13 C27 HL9 doub 149 n y C21 C20 HL9 sing 150 n n C21 N11 HL9 sing 151 n n C24 N11 HL9 sing 152 n n C24 C26 HL9 doub 153 n y C27 C26 HL9 sing 154 n y C20 C18 HL9 sing 155 n n N11 C22 HL9 sing 156 n n O07 C23 HL9 doub 157 n n C18 N09 HL9 sing 158 n n C18 C19 HL9 sing 159 n n C22 C19 HL9 sing 160 n n C23 N09 HL9 sing 161 n n C23 C17 HL9 sing 162 n n C17 C16 HL9 sing 163 n n C16 C15 HL9 sing 164 n n C15 C14 HL9 sing 165 n n C14 C01 HL9 sing 166 n n C01 C08 HL9 sing 167 n n C01 S04 HL9 sing 168 n n N06 C08 HL9 sing 169 n n N06 C05 HL9 sing 170 n n C08 C10 HL9 sing 171 n n S04 C12 HL9 sing 172 n n C05 O03 HL9 doub 173 n n C05 N02 HL9 sing 174 n n C10 C12 HL9 sing 175 n n C10 N02 HL9 sing 176 n n C01 H011 HL9 sing 177 n n C08 H081 HL9 sing 178 n n C10 H101 HL9 sing 179 n n C12 H122 HL9 sing 180 n n C12 H121 HL9 sing 181 n n C14 H142 HL9 sing 182 n n C14 H141 HL9 sing 183 n n C15 H151 HL9 sing 184 n n C15 H152 HL9 sing 185 n n C16 H162 HL9 sing 186 n n C16 H161 HL9 sing 187 n n C17 H171 HL9 sing 188 n n C17 H172 HL9 sing 189 n n C18 H181 HL9 sing 190 n n C19 H192 HL9 sing 191 n n C19 H191 HL9 sing 192 n n C20 H202 HL9 sing 193 n n C20 H201 HL9 sing 194 n n C21 H212 HL9 sing 195 n n C21 H211 HL9 sing 196 n n C22 H221 HL9 sing 197 n n C22 H222 HL9 sing 198 n n C25 H251 HL9 sing 199 n n C26 H261 HL9 sing 200 n n C27 H271 HL9 sing 201 n n C28 H281 HL9 sing 202 n n N02 H021 HL9 sing 203 n n N06 H061 HL9 sing 204 n n N09 H091 HL9 sing 205 n n # _atom_sites.entry_id 6T1G _atom_sites.fract_transf_matrix[1][1] 0.018107 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HL9 A 1 201 201 HL9 HL9 . D 2 HL9 B 1 301 301 HL9 HL9 . E 3 EDO B 1 302 401 EDO EDO . F 4 HOH A 1 301 165 HOH HOH . F 4 HOH A 2 302 38 HOH HOH . F 4 HOH A 3 303 25 HOH HOH . F 4 HOH A 4 304 36 HOH HOH . F 4 HOH A 5 305 138 HOH HOH . F 4 HOH A 6 306 31 HOH HOH . F 4 HOH A 7 307 183 HOH HOH . F 4 HOH A 8 308 178 HOH HOH . F 4 HOH A 9 309 22 HOH HOH . F 4 HOH A 10 310 69 HOH HOH . F 4 HOH A 11 311 113 HOH HOH . F 4 HOH A 12 312 4 HOH HOH . F 4 HOH A 13 313 54 HOH HOH . F 4 HOH A 14 314 96 HOH HOH . F 4 HOH A 15 315 97 HOH HOH . F 4 HOH A 16 316 105 HOH HOH . F 4 HOH A 17 317 5 HOH HOH . F 4 HOH A 18 318 84 HOH HOH . F 4 HOH A 19 319 81 HOH HOH . F 4 HOH A 20 320 77 HOH HOH . F 4 HOH A 21 321 111 HOH HOH . F 4 HOH A 22 322 1 HOH HOH . F 4 HOH A 23 323 53 HOH HOH . F 4 HOH A 24 324 20 HOH HOH . F 4 HOH A 25 325 155 HOH HOH . F 4 HOH A 26 326 19 HOH HOH . F 4 HOH A 27 327 23 HOH HOH . F 4 HOH A 28 328 177 HOH HOH . F 4 HOH A 29 329 151 HOH HOH . F 4 HOH A 30 330 30 HOH HOH . F 4 HOH A 31 331 91 HOH HOH . F 4 HOH A 32 332 93 HOH HOH . F 4 HOH A 33 333 9 HOH HOH . F 4 HOH A 34 334 7 HOH HOH . F 4 HOH A 35 335 179 HOH HOH . F 4 HOH A 36 336 156 HOH HOH . F 4 HOH A 37 337 8 HOH HOH . F 4 HOH A 38 338 108 HOH HOH . F 4 HOH A 39 339 82 HOH HOH . F 4 HOH A 40 340 15 HOH HOH . F 4 HOH A 41 341 167 HOH HOH . F 4 HOH A 42 342 125 HOH HOH . F 4 HOH A 43 343 10 HOH HOH . F 4 HOH A 44 344 74 HOH HOH . F 4 HOH A 45 345 58 HOH HOH . F 4 HOH A 46 346 29 HOH HOH . F 4 HOH A 47 347 26 HOH HOH . F 4 HOH A 48 348 127 HOH HOH . F 4 HOH A 49 349 99 HOH HOH . F 4 HOH A 50 350 41 HOH HOH . F 4 HOH A 51 351 21 HOH HOH . F 4 HOH A 52 352 52 HOH HOH . F 4 HOH A 53 353 119 HOH HOH . F 4 HOH A 54 354 130 HOH HOH . F 4 HOH A 55 355 48 HOH HOH . F 4 HOH A 56 356 129 HOH HOH . F 4 HOH A 57 357 136 HOH HOH . F 4 HOH A 58 358 59 HOH HOH . F 4 HOH A 59 359 56 HOH HOH . F 4 HOH A 60 360 145 HOH HOH . F 4 HOH A 61 361 34 HOH HOH . F 4 HOH A 62 362 148 HOH HOH . F 4 HOH A 63 363 14 HOH HOH . F 4 HOH A 64 364 60 HOH HOH . F 4 HOH A 65 365 80 HOH HOH . F 4 HOH A 66 366 72 HOH HOH . F 4 HOH A 67 367 57 HOH HOH . F 4 HOH A 68 368 152 HOH HOH . F 4 HOH A 69 369 121 HOH HOH . F 4 HOH A 70 370 42 HOH HOH . F 4 HOH A 71 371 126 HOH HOH . F 4 HOH A 72 372 112 HOH HOH . F 4 HOH A 73 373 153 HOH HOH . F 4 HOH A 74 374 124 HOH HOH . F 4 HOH A 75 375 120 HOH HOH . F 4 HOH A 76 376 63 HOH HOH . F 4 HOH A 77 377 168 HOH HOH . F 4 HOH A 78 378 133 HOH HOH . F 4 HOH A 79 379 140 HOH HOH . F 4 HOH A 80 380 92 HOH HOH . F 4 HOH A 81 381 123 HOH HOH . F 4 HOH A 82 382 137 HOH HOH . F 4 HOH A 83 383 103 HOH HOH . F 4 HOH A 84 384 71 HOH HOH . F 4 HOH A 85 385 65 HOH HOH . F 4 HOH A 86 386 147 HOH HOH . F 4 HOH A 87 387 158 HOH HOH . F 4 HOH A 88 388 176 HOH HOH . F 4 HOH A 89 389 166 HOH HOH . F 4 HOH A 90 390 172 HOH HOH . G 4 HOH B 1 401 182 HOH HOH . G 4 HOH B 2 402 70 HOH HOH . G 4 HOH B 3 403 128 HOH HOH . G 4 HOH B 4 404 49 HOH HOH . G 4 HOH B 5 405 6 HOH HOH . G 4 HOH B 6 406 18 HOH HOH . G 4 HOH B 7 407 106 HOH HOH . G 4 HOH B 8 408 141 HOH HOH . G 4 HOH B 9 409 47 HOH HOH . G 4 HOH B 10 410 115 HOH HOH . G 4 HOH B 11 411 94 HOH HOH . G 4 HOH B 12 412 100 HOH HOH . G 4 HOH B 13 413 78 HOH HOH . G 4 HOH B 14 414 35 HOH HOH . G 4 HOH B 15 415 13 HOH HOH . G 4 HOH B 16 416 2 HOH HOH . G 4 HOH B 17 417 76 HOH HOH . G 4 HOH B 18 418 12 HOH HOH . G 4 HOH B 19 419 87 HOH HOH . G 4 HOH B 20 420 46 HOH HOH . G 4 HOH B 21 421 143 HOH HOH . G 4 HOH B 22 422 27 HOH HOH . G 4 HOH B 23 423 62 HOH HOH . G 4 HOH B 24 424 118 HOH HOH . G 4 HOH B 25 425 40 HOH HOH . G 4 HOH B 26 426 117 HOH HOH . G 4 HOH B 27 427 61 HOH HOH . G 4 HOH B 28 428 75 HOH HOH . G 4 HOH B 29 429 11 HOH HOH . G 4 HOH B 30 430 95 HOH HOH . G 4 HOH B 31 431 17 HOH HOH . G 4 HOH B 32 432 114 HOH HOH . G 4 HOH B 33 433 28 HOH HOH . G 4 HOH B 34 434 33 HOH HOH . G 4 HOH B 35 435 3 HOH HOH . G 4 HOH B 36 436 67 HOH HOH . G 4 HOH B 37 437 16 HOH HOH . G 4 HOH B 38 438 146 HOH HOH . G 4 HOH B 39 439 66 HOH HOH . G 4 HOH B 40 440 64 HOH HOH . G 4 HOH B 41 441 43 HOH HOH . G 4 HOH B 42 442 55 HOH HOH . G 4 HOH B 43 443 73 HOH HOH . G 4 HOH B 44 444 90 HOH HOH . G 4 HOH B 45 445 32 HOH HOH . G 4 HOH B 46 446 44 HOH HOH . G 4 HOH B 47 447 50 HOH HOH . G 4 HOH B 48 448 39 HOH HOH . G 4 HOH B 49 449 89 HOH HOH . G 4 HOH B 50 450 160 HOH HOH . G 4 HOH B 51 451 24 HOH HOH . G 4 HOH B 52 452 122 HOH HOH . G 4 HOH B 53 453 107 HOH HOH . G 4 HOH B 54 454 79 HOH HOH . G 4 HOH B 55 455 149 HOH HOH . G 4 HOH B 56 456 104 HOH HOH . G 4 HOH B 57 457 181 HOH HOH . G 4 HOH B 58 458 86 HOH HOH . G 4 HOH B 59 459 150 HOH HOH . G 4 HOH B 60 460 98 HOH HOH . G 4 HOH B 61 461 162 HOH HOH . G 4 HOH B 62 462 163 HOH HOH . G 4 HOH B 63 463 139 HOH HOH . G 4 HOH B 64 464 157 HOH HOH . G 4 HOH B 65 465 159 HOH HOH . G 4 HOH B 66 466 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HL9 . . . C 2 -19.104 12.987 -8.822 1 28.44 ? C01 HL9 201 A 1 HETATM 2 C C05 HL9 . . . C 2 -16.331 13.661 -6.724 1 30.96 ? C05 HL9 201 A 1 HETATM 3 C C08 HL9 . . . C 2 -17.769 12.459 -8.243 1 30.01 ? C08 HL9 201 A 1 HETATM 4 C C10 HL9 . . . C 2 -18.039 12.04 -6.744 1 30.51 ? C10 HL9 201 A 1 HETATM 5 C C12 HL9 . . . C 2 -19.488 12.406 -6.399 1 28.43 ? C12 HL9 201 A 1 HETATM 6 C C14 HL9 . . . C 2 -18.992 13.83 -10.102 1 32.27 ? C14 HL9 201 A 1 HETATM 7 C C15 HL9 . . . C 2 -20.306 13.984 -10.883 1 30.64 ? C15 HL9 201 A 1 HETATM 8 C C16 HL9 . . . C 2 -20.178 14.831 -12.175 1 26.78 ? C16 HL9 201 A 1 HETATM 9 C C17 HL9 . . . C 2 -21.447 14.956 -13.033 1 24.97 ? C17 HL9 201 A 1 HETATM 10 C C18 HL9 . . . C 2 -23.983 12.208 -14.076 1 33.18 ? C18 HL9 201 A 1 HETATM 11 C C19 HL9 . . . C 2 -23.195 10.882 -13.994 1 37.6 ? C19 HL9 201 A 1 HETATM 12 C C20 HL9 . . . C 2 -24.901 12.392 -15.308 1 36.16 ? C20 HL9 201 A 1 HETATM 13 C C21 HL9 . . . C 2 -25.271 11.068 -15.985 1 37.13 ? C21 HL9 201 A 1 HETATM 14 C C22 HL9 . . . C 2 -23.94 9.622 -14.504 1 37.81 ? C22 HL9 201 A 1 HETATM 15 C C23 HL9 . . . C 2 -21.825 13.609 -13.615 1 25.31 ? C23 HL9 201 A 1 HETATM 16 C C24 HL9 . . . C 2 -26.378 9.17 -14.847 1 37.61 ? C24 HL9 201 A 1 HETATM 17 C C25 HL9 . . . C 2 -27.491 9.309 -15.714 1 40.61 ? C25 HL9 201 A 1 HETATM 18 C C26 HL9 . . . C 2 -26.469 8.202 -13.829 1 41.32 ? C26 HL9 201 A 1 HETATM 19 C C27 HL9 . . . C 2 -27.643 7.493 -13.677 1 45.01 ? C27 HL9 201 A 1 HETATM 20 C C28 HL9 . . . C 2 -28.611 8.528 -15.496 1 44.13 ? C28 HL9 201 A 1 HETATM 21 N N02 HL9 . . . C 2 -17.106 12.824 -5.949 1 28.02 ? N02 HL9 201 A 1 HETATM 22 N N06 HL9 . . . C 2 -16.717 13.462 -8.041 1 30.87 ? N06 HL9 201 A 1 HETATM 23 N N09 HL9 . . . C 2 -23.174 13.39 -13.658 1 26.38 ? N09 HL9 201 A 1 HETATM 24 N N11 HL9 . . . C 2 -25.252 9.925 -15.063 1 37.43 ? N11 HL9 201 A 1 HETATM 25 N N13 HL9 . . . C 2 -28.714 7.629 -14.493 1 47.88 ? N13 HL9 201 A 1 HETATM 26 O O03 HL9 . . . C 2 -15.466 14.449 -6.324 1 30.32 ? O03 HL9 201 A 1 HETATM 27 O O07 HL9 . . . C 2 -20.963 12.81 -13.965 1 29.2 ? O07 HL9 201 A 1 HETATM 28 S S04 HL9 . . . C 2 -19.93 13.867 -7.393 1 28.45 ? S04 HL9 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 43 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 647 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #