data_6T1G
#
_model_server_result.job_id            RtfDD9wpk0QDzmYGzFBa7w 
_model_server_result.datetime_utc      '2024-11-17 22:01:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t1g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    6T1G 
#
_exptl.entry_id    6T1G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              403.542 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6T1G 
_cell.length_a            55.226 
_cell.length_b            55.226 
_cell.length_c            168.478 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T1G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        95 
_symmetry.space_group_name_Hall    'P 4cw 2c' 
_symmetry.space_group_name_H-M     'P 43 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -55.226 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C20 H29 N5 O2 S' 
_chem_comp.formula_weight    403.542 
_chem_comp.id                HL9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 C25 HL9 doub 146 n y 
C28 N13 HL9 sing 147 n y 
C25 C24 HL9 sing 148 n y 
N13 C27 HL9 doub 149 n y 
C21 C20 HL9 sing 150 n n 
C21 N11 HL9 sing 151 n n 
C24 N11 HL9 sing 152 n n 
C24 C26 HL9 doub 153 n y 
C27 C26 HL9 sing 154 n y 
C20 C18 HL9 sing 155 n n 
N11 C22 HL9 sing 156 n n 
O07 C23 HL9 doub 157 n n 
C18 N09 HL9 sing 158 n n 
C18 C19 HL9 sing 159 n n 
C22 C19 HL9 sing 160 n n 
C23 N09 HL9 sing 161 n n 
C23 C17 HL9 sing 162 n n 
C17 C16 HL9 sing 163 n n 
C16 C15 HL9 sing 164 n n 
C15 C14 HL9 sing 165 n n 
C14 C01 HL9 sing 166 n n 
C01 C08 HL9 sing 167 n n 
C01 S04 HL9 sing 168 n n 
N06 C08 HL9 sing 169 n n 
N06 C05 HL9 sing 170 n n 
C08 C10 HL9 sing 171 n n 
S04 C12 HL9 sing 172 n n 
C05 O03 HL9 doub 173 n n 
C05 N02 HL9 sing 174 n n 
C10 C12 HL9 sing 175 n n 
C10 N02 HL9 sing 176 n n 
C01 H011 HL9 sing 177 n n 
C08 H081 HL9 sing 178 n n 
C10 H101 HL9 sing 179 n n 
C12 H122 HL9 sing 180 n n 
C12 H121 HL9 sing 181 n n 
C14 H142 HL9 sing 182 n n 
C14 H141 HL9 sing 183 n n 
C15 H151 HL9 sing 184 n n 
C15 H152 HL9 sing 185 n n 
C16 H162 HL9 sing 186 n n 
C16 H161 HL9 sing 187 n n 
C17 H171 HL9 sing 188 n n 
C17 H172 HL9 sing 189 n n 
C18 H181 HL9 sing 190 n n 
C19 H192 HL9 sing 191 n n 
C19 H191 HL9 sing 192 n n 
C20 H202 HL9 sing 193 n n 
C20 H201 HL9 sing 194 n n 
C21 H212 HL9 sing 195 n n 
C21 H211 HL9 sing 196 n n 
C22 H221 HL9 sing 197 n n 
C22 H222 HL9 sing 198 n n 
C25 H251 HL9 sing 199 n n 
C26 H261 HL9 sing 200 n n 
C27 H271 HL9 sing 201 n n 
C28 H281 HL9 sing 202 n n 
N02 H021 HL9 sing 203 n n 
N06 H061 HL9 sing 204 n n 
N09 H091 HL9 sing 205 n n 
#
_atom_sites.entry_id                     6T1G 
_atom_sites.fract_transf_matrix[1][1]    0.018107 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018107 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005935 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HL9 A 1 201 201 HL9 HL9 . 
D 2 HL9 B 1 301 301 HL9 HL9 . 
E 3 EDO B 1 302 401 EDO EDO . 
F 4 HOH A 1 301 165 HOH HOH . 
F 4 HOH A 2 302 38 HOH HOH . 
F 4 HOH A 3 303 25 HOH HOH . 
F 4 HOH A 4 304 36 HOH HOH . 
F 4 HOH A 5 305 138 HOH HOH . 
F 4 HOH A 6 306 31 HOH HOH . 
F 4 HOH A 7 307 183 HOH HOH . 
F 4 HOH A 8 308 178 HOH HOH . 
F 4 HOH A 9 309 22 HOH HOH . 
F 4 HOH A 10 310 69 HOH HOH . 
F 4 HOH A 11 311 113 HOH HOH . 
F 4 HOH A 12 312 4 HOH HOH . 
F 4 HOH A 13 313 54 HOH HOH . 
F 4 HOH A 14 314 96 HOH HOH . 
F 4 HOH A 15 315 97 HOH HOH . 
F 4 HOH A 16 316 105 HOH HOH . 
F 4 HOH A 17 317 5 HOH HOH . 
F 4 HOH A 18 318 84 HOH HOH . 
F 4 HOH A 19 319 81 HOH HOH . 
F 4 HOH A 20 320 77 HOH HOH . 
F 4 HOH A 21 321 111 HOH HOH . 
F 4 HOH A 22 322 1 HOH HOH . 
F 4 HOH A 23 323 53 HOH HOH . 
F 4 HOH A 24 324 20 HOH HOH . 
F 4 HOH A 25 325 155 HOH HOH . 
F 4 HOH A 26 326 19 HOH HOH . 
F 4 HOH A 27 327 23 HOH HOH . 
F 4 HOH A 28 328 177 HOH HOH . 
F 4 HOH A 29 329 151 HOH HOH . 
F 4 HOH A 30 330 30 HOH HOH . 
F 4 HOH A 31 331 91 HOH HOH . 
F 4 HOH A 32 332 93 HOH HOH . 
F 4 HOH A 33 333 9 HOH HOH . 
F 4 HOH A 34 334 7 HOH HOH . 
F 4 HOH A 35 335 179 HOH HOH . 
F 4 HOH A 36 336 156 HOH HOH . 
F 4 HOH A 37 337 8 HOH HOH . 
F 4 HOH A 38 338 108 HOH HOH . 
F 4 HOH A 39 339 82 HOH HOH . 
F 4 HOH A 40 340 15 HOH HOH . 
F 4 HOH A 41 341 167 HOH HOH . 
F 4 HOH A 42 342 125 HOH HOH . 
F 4 HOH A 43 343 10 HOH HOH . 
F 4 HOH A 44 344 74 HOH HOH . 
F 4 HOH A 45 345 58 HOH HOH . 
F 4 HOH A 46 346 29 HOH HOH . 
F 4 HOH A 47 347 26 HOH HOH . 
F 4 HOH A 48 348 127 HOH HOH . 
F 4 HOH A 49 349 99 HOH HOH . 
F 4 HOH A 50 350 41 HOH HOH . 
F 4 HOH A 51 351 21 HOH HOH . 
F 4 HOH A 52 352 52 HOH HOH . 
F 4 HOH A 53 353 119 HOH HOH . 
F 4 HOH A 54 354 130 HOH HOH . 
F 4 HOH A 55 355 48 HOH HOH . 
F 4 HOH A 56 356 129 HOH HOH . 
F 4 HOH A 57 357 136 HOH HOH . 
F 4 HOH A 58 358 59 HOH HOH . 
F 4 HOH A 59 359 56 HOH HOH . 
F 4 HOH A 60 360 145 HOH HOH . 
F 4 HOH A 61 361 34 HOH HOH . 
F 4 HOH A 62 362 148 HOH HOH . 
F 4 HOH A 63 363 14 HOH HOH . 
F 4 HOH A 64 364 60 HOH HOH . 
F 4 HOH A 65 365 80 HOH HOH . 
F 4 HOH A 66 366 72 HOH HOH . 
F 4 HOH A 67 367 57 HOH HOH . 
F 4 HOH A 68 368 152 HOH HOH . 
F 4 HOH A 69 369 121 HOH HOH . 
F 4 HOH A 70 370 42 HOH HOH . 
F 4 HOH A 71 371 126 HOH HOH . 
F 4 HOH A 72 372 112 HOH HOH . 
F 4 HOH A 73 373 153 HOH HOH . 
F 4 HOH A 74 374 124 HOH HOH . 
F 4 HOH A 75 375 120 HOH HOH . 
F 4 HOH A 76 376 63 HOH HOH . 
F 4 HOH A 77 377 168 HOH HOH . 
F 4 HOH A 78 378 133 HOH HOH . 
F 4 HOH A 79 379 140 HOH HOH . 
F 4 HOH A 80 380 92 HOH HOH . 
F 4 HOH A 81 381 123 HOH HOH . 
F 4 HOH A 82 382 137 HOH HOH . 
F 4 HOH A 83 383 103 HOH HOH . 
F 4 HOH A 84 384 71 HOH HOH . 
F 4 HOH A 85 385 65 HOH HOH . 
F 4 HOH A 86 386 147 HOH HOH . 
F 4 HOH A 87 387 158 HOH HOH . 
F 4 HOH A 88 388 176 HOH HOH . 
F 4 HOH A 89 389 166 HOH HOH . 
F 4 HOH A 90 390 172 HOH HOH . 
G 4 HOH B 1 401 182 HOH HOH . 
G 4 HOH B 2 402 70 HOH HOH . 
G 4 HOH B 3 403 128 HOH HOH . 
G 4 HOH B 4 404 49 HOH HOH . 
G 4 HOH B 5 405 6 HOH HOH . 
G 4 HOH B 6 406 18 HOH HOH . 
G 4 HOH B 7 407 106 HOH HOH . 
G 4 HOH B 8 408 141 HOH HOH . 
G 4 HOH B 9 409 47 HOH HOH . 
G 4 HOH B 10 410 115 HOH HOH . 
G 4 HOH B 11 411 94 HOH HOH . 
G 4 HOH B 12 412 100 HOH HOH . 
G 4 HOH B 13 413 78 HOH HOH . 
G 4 HOH B 14 414 35 HOH HOH . 
G 4 HOH B 15 415 13 HOH HOH . 
G 4 HOH B 16 416 2 HOH HOH . 
G 4 HOH B 17 417 76 HOH HOH . 
G 4 HOH B 18 418 12 HOH HOH . 
G 4 HOH B 19 419 87 HOH HOH . 
G 4 HOH B 20 420 46 HOH HOH . 
G 4 HOH B 21 421 143 HOH HOH . 
G 4 HOH B 22 422 27 HOH HOH . 
G 4 HOH B 23 423 62 HOH HOH . 
G 4 HOH B 24 424 118 HOH HOH . 
G 4 HOH B 25 425 40 HOH HOH . 
G 4 HOH B 26 426 117 HOH HOH . 
G 4 HOH B 27 427 61 HOH HOH . 
G 4 HOH B 28 428 75 HOH HOH . 
G 4 HOH B 29 429 11 HOH HOH . 
G 4 HOH B 30 430 95 HOH HOH . 
G 4 HOH B 31 431 17 HOH HOH . 
G 4 HOH B 32 432 114 HOH HOH . 
G 4 HOH B 33 433 28 HOH HOH . 
G 4 HOH B 34 434 33 HOH HOH . 
G 4 HOH B 35 435 3 HOH HOH . 
G 4 HOH B 36 436 67 HOH HOH . 
G 4 HOH B 37 437 16 HOH HOH . 
G 4 HOH B 38 438 146 HOH HOH . 
G 4 HOH B 39 439 66 HOH HOH . 
G 4 HOH B 40 440 64 HOH HOH . 
G 4 HOH B 41 441 43 HOH HOH . 
G 4 HOH B 42 442 55 HOH HOH . 
G 4 HOH B 43 443 73 HOH HOH . 
G 4 HOH B 44 444 90 HOH HOH . 
G 4 HOH B 45 445 32 HOH HOH . 
G 4 HOH B 46 446 44 HOH HOH . 
G 4 HOH B 47 447 50 HOH HOH . 
G 4 HOH B 48 448 39 HOH HOH . 
G 4 HOH B 49 449 89 HOH HOH . 
G 4 HOH B 50 450 160 HOH HOH . 
G 4 HOH B 51 451 24 HOH HOH . 
G 4 HOH B 52 452 122 HOH HOH . 
G 4 HOH B 53 453 107 HOH HOH . 
G 4 HOH B 54 454 79 HOH HOH . 
G 4 HOH B 55 455 149 HOH HOH . 
G 4 HOH B 56 456 104 HOH HOH . 
G 4 HOH B 57 457 181 HOH HOH . 
G 4 HOH B 58 458 86 HOH HOH . 
G 4 HOH B 59 459 150 HOH HOH . 
G 4 HOH B 60 460 98 HOH HOH . 
G 4 HOH B 61 461 162 HOH HOH . 
G 4 HOH B 62 462 163 HOH HOH . 
G 4 HOH B 63 463 139 HOH HOH . 
G 4 HOH B 64 464 157 HOH HOH . 
G 4 HOH B 65 465 159 HOH HOH . 
G 4 HOH B 66 466 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 HL9 . . . D 2 -22.943 -3.4 11.268 1 30.88 ? C01 HL9 301 B 1 
HETATM 2 C C05 HL9 . . . D 2 -19.656 -4.014 10.298 1 32.31 ? C05 HL9 301 B 1 
HETATM 3 C C08 HL9 . . . D 2 -21.508 -2.838 11.16 1 28.99 ? C08 HL9 301 B 1 
HETATM 4 C C10 HL9 . . . D 2 -21.252 -2.406 9.657 1 26.61 ? C10 HL9 301 B 1 
HETATM 5 C C12 HL9 . . . D 2 -22.482 -2.82 8.833 1 28.17 ? C12 HL9 301 B 1 
HETATM 6 C C14 HL9 . . . D 2 -23.224 -4.256 12.509 1 30.08 ? C14 HL9 301 B 1 
HETATM 7 C C15 HL9 . . . D 2 -24.719 -4.419 12.813 1 31.19 ? C15 HL9 301 B 1 
HETATM 8 C C16 HL9 . . . D 2 -24.973 -5.292 14.05 1 32.34 ? C16 HL9 301 B 1 
HETATM 9 C C17 HL9 . . . D 2 -26.463 -5.48 14.301 1 33.2 ? C17 HL9 301 B 1 
HETATM 10 C C18 HL9 . . . D 2 -29.263 -2.822 14.447 1 39.35 ? C18 HL9 301 B 1 
HETATM 11 C C19 HL9 . . . D 2 -28.534 -1.475 14.253 1 41.72 ? C19 HL9 301 B 1 
HETATM 12 C C20 HL9 . . . D 2 -30.175 -2.875 15.684 1 39.56 ? C20 HL9 301 B 1 
HETATM 13 C C21 HL9 . . . D 2 -31.191 -1.72 15.694 1 40.13 ? C21 HL9 301 B 1 
HETATM 14 C C22 HL9 . . . D 2 -29.319 -0.3 14.851 1 44.53 ? C22 HL9 301 B 1 
HETATM 15 C C23 HL9 . . . D 2 -27.073 -4.157 14.727 1 33.31 ? C23 HL9 301 B 1 
HETATM 16 C C24 HL9 . . . D 2 -31.666 0.281 14.278 1 42.97 ? C24 HL9 301 B 1 
HETATM 17 C C25 HL9 . . . D 2 -33.024 0.307 14.656 1 41.34 ? C25 HL9 301 B 1 
HETATM 18 C C26 HL9 . . . D 2 -31.293 1.171 13.247 1 47.57 ? C26 HL9 301 B 1 
HETATM 19 C C27 HL9 . . . D 2 -32.25 1.99 12.67 1 48.27 ? C27 HL9 301 B 1 
HETATM 20 C C28 HL9 . . . D 2 -33.894 1.167 14.004 1 40.23 ? C28 HL9 301 B 1 
HETATM 21 N N02 HL9 . . . D 2 -20.087 -3.19 9.279 1 28.79 ? N02 HL9 301 B 1 
HETATM 22 N N06 HL9 . . . D 2 -20.47 -3.819 11.398 1 28.6 ? N06 HL9 301 B 1 
HETATM 23 N N09 HL9 . . . D 2 -28.351 -3.975 14.296 1 35.65 ? N09 HL9 301 B 1 
HETATM 24 N N11 HL9 . . . D 2 -30.764 -0.554 14.898 1 43.91 ? N11 HL9 301 B 1 
HETATM 25 N N13 HL9 . . . D 2 -33.543 2.013 13.026 1 45.7 ? N13 HL9 301 B 1 
HETATM 26 O O03 HL9 . . . D 2 -18.698 -4.775 10.248 1 34.74 ? O03 HL9 301 B 1 
HETATM 27 O O07 HL9 . . . D 2 -26.425 -3.366 15.404 1 32.12 ? O07 HL9 301 B 1 
HETATM 28 S S04 HL9 . . . D 2 -23.156 -4.282 9.677 1 30.41 ? S04 HL9 301 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           28 
#