data_6T1J # _model_server_result.job_id H58ygZabuSXymDFibKn2yQ _model_server_result.datetime_utc '2024-11-24 05:49:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 6T1J # _exptl.entry_id 6T1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 412.548 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T1J _cell.length_a 49.152 _cell.length_b 49.152 _cell.length_c 131.009 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H28 N4 O2 S' _chem_comp.formula_weight 412.548 _chem_comp.id M7T _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C9 M7T sing 227 n n C8 C7 M7T sing 228 n n C9 C10 M7T sing 229 n n C7 N1 M7T sing 230 n n C10 N1 M7T sing 231 n n N1 C6 M7T sing 232 n n C6 C5 M7T sing 233 n n C11 C5 M7T doub 234 n y C11 C12 M7T sing 235 n y C5 C4 M7T sing 236 n y C12 C2 M7T doub 237 n y C4 C3 M7T doub 238 n y C2 C1 M7T sing 239 n n C2 C3 M7T sing 240 n y C1 N M7T sing 241 n n O C M7T doub 242 n n N C M7T sing 243 n n C N2 M7T sing 244 n n N2 C13 M7T sing 245 n n N2 C20 M7T sing 246 n n C13 C14 M7T sing 247 n n C20 C21 M7T sing 248 n n C14 N3 M7T sing 249 n n C21 N3 M7T sing 250 n n N3 C15 M7T sing 251 n n C15 C16 M7T sing 252 n n C15 O1 M7T doub 253 n n C17 C16 M7T doub 254 n y C17 C18 M7T sing 255 n y C16 S M7T sing 256 n y C18 C19 M7T doub 257 n y C19 S M7T sing 258 n y C19 H1 M7T sing 259 n n C18 H2 M7T sing 260 n n C17 H3 M7T sing 261 n n C14 H4 M7T sing 262 n n C14 H5 M7T sing 263 n n C13 H6 M7T sing 264 n n C13 H7 M7T sing 265 n n C21 H8 M7T sing 266 n n C21 H9 M7T sing 267 n n C20 H10 M7T sing 268 n n C20 H11 M7T sing 269 n n N H12 M7T sing 270 n n C1 H13 M7T sing 271 n n C1 H14 M7T sing 272 n n C12 H15 M7T sing 273 n n C11 H16 M7T sing 274 n n C4 H17 M7T sing 275 n n C3 H18 M7T sing 276 n n C6 H19 M7T sing 277 n n C6 H20 M7T sing 278 n n C10 H22 M7T sing 279 n n C10 H23 M7T sing 280 n n C9 H24 M7T sing 281 n n C9 H25 M7T sing 282 n n C8 H26 M7T sing 283 n n C8 H27 M7T sing 284 n n C7 H28 M7T sing 285 n n C7 H29 M7T sing 286 n n # _atom_sites.entry_id 6T1J _atom_sites.fract_transf_matrix[1][1] 0.020345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020345 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 2 EDO A 1 204 4 EDO EDO . F 2 EDO A 1 205 5 EDO EDO . G 2 EDO A 1 206 6 EDO EDO . H 2 EDO A 1 207 7 EDO EDO . I 3 M7T A 1 208 1 M7T ULB . J 4 HOH A 1 301 40 HOH HOH . J 4 HOH A 2 302 50 HOH HOH . J 4 HOH A 3 303 41 HOH HOH . J 4 HOH A 4 304 5 HOH HOH . J 4 HOH A 5 305 18 HOH HOH . J 4 HOH A 6 306 2 HOH HOH . J 4 HOH A 7 307 25 HOH HOH . J 4 HOH A 8 308 24 HOH HOH . J 4 HOH A 9 309 20 HOH HOH . J 4 HOH A 10 310 44 HOH HOH . J 4 HOH A 11 311 38 HOH HOH . J 4 HOH A 12 312 21 HOH HOH . J 4 HOH A 13 313 11 HOH HOH . J 4 HOH A 14 314 22 HOH HOH . J 4 HOH A 15 315 51 HOH HOH . J 4 HOH A 16 316 19 HOH HOH . J 4 HOH A 17 317 13 HOH HOH . J 4 HOH A 18 318 3 HOH HOH . J 4 HOH A 19 319 12 HOH HOH . J 4 HOH A 20 320 36 HOH HOH . J 4 HOH A 21 321 33 HOH HOH . J 4 HOH A 22 322 28 HOH HOH . J 4 HOH A 23 323 48 HOH HOH . J 4 HOH A 24 324 17 HOH HOH . J 4 HOH A 25 325 27 HOH HOH . J 4 HOH A 26 326 1 HOH HOH . J 4 HOH A 27 327 6 HOH HOH . J 4 HOH A 28 328 15 HOH HOH . J 4 HOH A 29 329 31 HOH HOH . J 4 HOH A 30 330 9 HOH HOH . J 4 HOH A 31 331 29 HOH HOH . J 4 HOH A 32 332 8 HOH HOH . J 4 HOH A 33 333 23 HOH HOH . J 4 HOH A 34 334 14 HOH HOH . J 4 HOH A 35 335 35 HOH HOH . J 4 HOH A 36 336 46 HOH HOH . J 4 HOH A 37 337 34 HOH HOH . J 4 HOH A 38 338 43 HOH HOH . J 4 HOH A 39 339 7 HOH HOH . J 4 HOH A 40 340 39 HOH HOH . J 4 HOH A 41 341 49 HOH HOH . J 4 HOH A 42 342 47 HOH HOH . J 4 HOH A 43 343 45 HOH HOH . J 4 HOH A 44 344 10 HOH HOH . J 4 HOH A 45 345 30 HOH HOH . J 4 HOH A 46 346 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 M7T . . . I 3 -2.512 17.09 19.691 1 95.47 ? O1 M7T 208 A 1 HETATM 2 C C15 M7T . . . I 3 -3.074 16.268 18.977 1 94.99 ? C15 M7T 208 A 1 HETATM 3 C C16 M7T . . . I 3 -4.197 15.491 19.564 1 104.68 ? C16 M7T 208 A 1 HETATM 4 S S M7T . . . I 3 -4.423 15.589 21.258 1 119.27 ? S M7T 208 A 1 HETATM 5 C C19 M7T . . . I 3 -5.735 14.491 21.211 1 113.62 ? C19 M7T 208 A 1 HETATM 6 C C18 M7T . . . I 3 -6.017 14.054 19.968 1 107.39 ? C18 M7T 208 A 1 HETATM 7 C C17 M7T . . . I 3 -5.165 14.603 18.99 1 106.31 ? C17 M7T 208 A 1 HETATM 8 N N3 M7T . . . I 3 -2.627 15.972 17.737 1 84.17 ? N3 M7T 208 A 1 HETATM 9 C C14 M7T . . . I 3 -3.283 15.054 16.797 1 81.55 ? C14 M7T 208 A 1 HETATM 10 C C13 M7T . . . I 3 -2.829 15.335 15.377 1 76.37 ? C13 M7T 208 A 1 HETATM 11 C C21 M7T . . . I 3 -1.342 16.466 17.235 1 78.53 ? C21 M7T 208 A 1 HETATM 12 C C20 M7T . . . I 3 -0.641 15.384 16.457 1 72.95 ? C20 M7T 208 A 1 HETATM 13 N N2 M7T . . . I 3 -1.395 15.066 15.239 1 72.43 ? N2 M7T 208 A 1 HETATM 14 C C M7T . . . I 3 -0.83 15.008 14.002 1 67.5 ? C M7T 208 A 1 HETATM 15 O O M7T . . . I 3 -1.507 15.038 12.981 1 61.54 ? O M7T 208 A 1 HETATM 16 N N M7T . . . I 3 0.504 14.903 14 1 64.09 ? N M7T 208 A 1 HETATM 17 C C1 M7T . . . I 3 1.163 14.223 12.9 1 65.66 ? C1 M7T 208 A 1 HETATM 18 C C2 M7T . . . I 3 2.583 14.68 12.678 1 71.96 ? C2 M7T 208 A 1 HETATM 19 C C12 M7T . . . I 3 3.475 13.868 11.999 1 74.2 ? C12 M7T 208 A 1 HETATM 20 C C11 M7T . . . I 3 4.72 14.333 11.628 1 71.21 ? C11 M7T 208 A 1 HETATM 21 C C5 M7T . . . I 3 5.113 15.628 11.919 1 76.35 ? C5 M7T 208 A 1 HETATM 22 C C4 M7T . . . I 3 4.247 16.424 12.657 1 71.6 ? C4 M7T 208 A 1 HETATM 23 C C3 M7T . . . I 3 3 15.957 13.031 1 67.52 ? C3 M7T 208 A 1 HETATM 24 C C6 M7T . . . I 3 6.364 16.199 11.293 1 78.1 ? C6 M7T 208 A 1 HETATM 25 N N1 M7T . . . I 3 6.386 16.032 9.829 1 82.63 ? N1 M7T 208 A 1 HETATM 26 C C10 M7T . . . I 3 7.695 16.322 9.235 1 84.57 ? C10 M7T 208 A 1 HETATM 27 C C9 M7T . . . I 3 7.4 16.485 7.784 1 83.07 ? C9 M7T 208 A 1 HETATM 28 C C8 M7T . . . I 3 6.126 17.201 7.766 1 83.43 ? C8 M7T 208 A 1 HETATM 29 C C7 M7T . . . I 3 5.465 16.944 9.141 1 82.43 ? C7 M7T 208 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #