data_6T1L # _model_server_result.job_id ti5wazJvG8s9AxAE91effA _model_server_result.datetime_utc '2024-11-24 09:04:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":211}' # _entry.id 6T1L # _exptl.entry_id 6T1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[4-(diethylaminomethyl)phenyl]methyl]-4-pyrimidin-2-yl-piperazine-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T1L _cell.length_a 49.078 _cell.length_b 49.078 _cell.length_c 131.708 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N6 O' _chem_comp.formula_weight 382.503 _chem_comp.id M7N _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[4-(diethylaminomethyl)phenyl]methyl]-4-pyrimidin-2-yl-piperazine-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 M7N sing 227 n n C C1 M7N sing 228 n n C2 N M7N sing 229 n n C1 N M7N sing 230 n n N C4 M7N sing 231 n n C20 C19 M7N doub 232 n y C20 C5 M7N sing 233 n y C4 C5 M7N sing 234 n n C19 C8 M7N sing 235 n y C5 C6 M7N doub 236 n y C8 C9 M7N sing 237 n n C8 C7 M7N doub 238 n y C6 C7 M7N sing 239 n y C9 N1 M7N sing 240 n n O C10 M7N doub 241 n n N1 C10 M7N sing 242 n n C10 N2 M7N sing 243 n n N2 C11 M7N sing 244 n n N2 C13 M7N sing 245 n n C11 C12 M7N sing 246 n n C13 C14 M7N sing 247 n n C12 N3 M7N sing 248 n n C14 N3 M7N sing 249 n n N3 C15 M7N sing 250 n n C15 N4 M7N doub 251 n y C15 N5 M7N sing 252 n y N4 C16 M7N sing 253 n y N5 C18 M7N doub 254 n y C16 C17 M7N doub 255 n y C18 C17 M7N sing 256 n y C7 H1 M7N sing 257 n n C6 H2 M7N sing 258 n n C4 H3 M7N sing 259 n n C4 H4 M7N sing 260 n n C3 H5 M7N sing 261 n n C3 H6 M7N sing 262 n n C3 H7 M7N sing 263 n n C2 H8 M7N sing 264 n n C2 H9 M7N sing 265 n n C1 H10 M7N sing 266 n n C1 H11 M7N sing 267 n n C9 H12 M7N sing 268 n n C9 H13 M7N sing 269 n n C11 H14 M7N sing 270 n n C11 H15 M7N sing 271 n n N1 H16 M7N sing 272 n n C12 H17 M7N sing 273 n n C12 H18 M7N sing 274 n n C13 H19 M7N sing 275 n n C13 H20 M7N sing 276 n n C14 H21 M7N sing 277 n n C14 H22 M7N sing 278 n n C16 H23 M7N sing 279 n n C17 H24 M7N sing 280 n n C18 H25 M7N sing 281 n n C19 H26 M7N sing 282 n n C20 H27 M7N sing 283 n n C H29 M7N sing 284 n n C H30 M7N sing 285 n n C H31 M7N sing 286 n n # _atom_sites.entry_id 6T1L _atom_sites.fract_transf_matrix[1][1] 0.020376 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 2 EDO A 1 204 4 EDO EDO . F 2 EDO A 1 205 5 EDO EDO . G 2 EDO A 1 206 6 EDO EDO . H 2 EDO A 1 207 7 EDO EDO . I 2 EDO A 1 208 8 EDO EDO . J 2 EDO A 1 209 9 EDO EDO . K 2 EDO A 1 210 10 EDO EDO . L 3 M7N A 1 211 1 M7N ULA . M 4 HOH A 1 301 48 HOH HOH . M 4 HOH A 2 302 50 HOH HOH . M 4 HOH A 3 303 2 HOH HOH . M 4 HOH A 4 304 52 HOH HOH . M 4 HOH A 5 305 54 HOH HOH . M 4 HOH A 6 306 35 HOH HOH . M 4 HOH A 7 307 39 HOH HOH . M 4 HOH A 8 308 28 HOH HOH . M 4 HOH A 9 309 32 HOH HOH . M 4 HOH A 10 310 17 HOH HOH . M 4 HOH A 11 311 36 HOH HOH . M 4 HOH A 12 312 37 HOH HOH . M 4 HOH A 13 313 14 HOH HOH . M 4 HOH A 14 314 31 HOH HOH . M 4 HOH A 15 315 49 HOH HOH . M 4 HOH A 16 316 40 HOH HOH . M 4 HOH A 17 317 12 HOH HOH . M 4 HOH A 18 318 45 HOH HOH . M 4 HOH A 19 319 23 HOH HOH . M 4 HOH A 20 320 1 HOH HOH . M 4 HOH A 21 321 47 HOH HOH . M 4 HOH A 22 322 34 HOH HOH . M 4 HOH A 23 323 20 HOH HOH . M 4 HOH A 24 324 5 HOH HOH . M 4 HOH A 25 325 3 HOH HOH . M 4 HOH A 26 326 18 HOH HOH . M 4 HOH A 27 327 7 HOH HOH . M 4 HOH A 28 328 10 HOH HOH . M 4 HOH A 29 329 19 HOH HOH . M 4 HOH A 30 330 6 HOH HOH . M 4 HOH A 31 331 33 HOH HOH . M 4 HOH A 32 332 4 HOH HOH . M 4 HOH A 33 333 24 HOH HOH . M 4 HOH A 34 334 46 HOH HOH . M 4 HOH A 35 335 9 HOH HOH . M 4 HOH A 36 336 53 HOH HOH . M 4 HOH A 37 337 51 HOH HOH . M 4 HOH A 38 338 44 HOH HOH . M 4 HOH A 39 339 21 HOH HOH . M 4 HOH A 40 340 22 HOH HOH . M 4 HOH A 41 341 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 M7N . . . L 3 3.211 15.878 13.132 1 79.48 ? C7 M7N 211 A 1 HETATM 2 C C6 M7N . . . L 3 4.478 16.275 12.734 1 82.07 ? C6 M7N 211 A 1 HETATM 3 C C5 M7N . . . L 3 5.224 15.502 11.852 1 89.07 ? C5 M7N 211 A 1 HETATM 4 C C4 M7N . . . L 3 6.643 15.886 11.49 1 96.57 ? C4 M7N 211 A 1 HETATM 5 C C3 M7N . . . L 3 6.43 17.316 7.966 1 102.6 ? C3 M7N 211 A 1 HETATM 6 C C2 M7N . . . L 3 5.995 16.915 9.365 1 105.14 ? C2 M7N 211 A 1 HETATM 7 C C1 M7N . . . L 3 7.13 14.613 9.425 1 105.45 ? C1 M7N 211 A 1 HETATM 8 C C8 M7N . . . L 3 2.649 14.702 12.651 1 75.03 ? C8 M7N 211 A 1 HETATM 9 C C9 M7N . . . L 3 1.224 14.313 12.96 1 68.29 ? C9 M7N 211 A 1 HETATM 10 C C10 M7N . . . L 3 -0.689 15.17 14.191 1 71.8 ? C10 M7N 211 A 1 HETATM 11 C C11 M7N . . . L 3 -2.617 14.989 15.685 1 84.17 ? C11 M7N 211 A 1 HETATM 12 N N1 M7N . . . L 3 0.643 14.965 14.124 1 65.18 ? N1 M7N 211 A 1 HETATM 13 C C12 M7N . . . L 3 -2.86 14.753 17.181 1 88.54 ? C12 M7N 211 A 1 HETATM 14 C C13 M7N . . . L 3 -0.781 16.476 16.263 1 84.67 ? C13 M7N 211 A 1 HETATM 15 C C14 M7N . . . L 3 -1.023 16.184 17.726 1 87.64 ? C14 M7N 211 A 1 HETATM 16 N N2 M7N . . . L 3 -1.209 15.337 15.443 1 80.09 ? N2 M7N 211 A 1 HETATM 17 C C15 M7N . . . L 3 -3.04 16.237 19.164 1 98.38 ? C15 M7N 211 A 1 HETATM 18 C C16 M7N . . . L 3 -4.571 15.744 20.772 1 96.37 ? C16 M7N 211 A 1 HETATM 19 N N3 M7N . . . L 3 -2.444 15.921 17.964 1 93.12 ? N3 M7N 211 A 1 HETATM 20 C C17 M7N . . . L 3 -4.296 16.918 21.43 1 96.98 ? C17 M7N 211 A 1 HETATM 21 C C18 M7N . . . L 3 -3.343 17.724 20.86 1 95.32 ? C18 M7N 211 A 1 HETATM 22 C C19 M7N . . . L 3 3.402 13.926 11.784 1 80.95 ? C19 M7N 211 A 1 HETATM 23 C C20 M7N . . . L 3 4.667 14.319 11.39 1 84.44 ? C20 M7N 211 A 1 HETATM 24 N N4 M7N . . . L 3 -3.965 15.37 19.636 1 97.22 ? N4 M7N 211 A 1 HETATM 25 O O M7N . . . L 3 -1.401 15.183 13.194 1 65.66 ? O M7N 211 A 1 HETATM 26 N N5 M7N . . . L 3 -2.691 17.416 19.729 1 98.13 ? N5 M7N 211 A 1 HETATM 27 N N M7N . . . L 3 6.917 15.974 10.039 1 104.17 ? N M7N 211 A 1 HETATM 28 C C M7N . . . L 3 6.12 14.206 8.355 1 100.8 ? C M7N 211 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #