data_6T1L
#
_model_server_result.job_id            MNOmhRBfnn0AwaqMavCK_A 
_model_server_result.datetime_utc      '2024-11-06 02:00:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t1l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":211}' 
#
_entry.id    6T1L 
#
_exptl.entry_id    6T1L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.503 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[[4-(diethylaminomethyl)phenyl]methyl]-4-pyrimidin-2-yl-piperazine-1-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6T1L 
_cell.length_a            49.078 
_cell.length_b            49.078 
_cell.length_c            131.708 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T1L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H30 N6 O' 
_chem_comp.formula_weight    382.503 
_chem_comp.id                M7N 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[[4-(diethylaminomethyl)phenyl]methyl]-4-pyrimidin-2-yl-piperazine-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C2 M7N sing 227 n n 
C C1 M7N sing 228 n n 
C2 N M7N sing 229 n n 
C1 N M7N sing 230 n n 
N C4 M7N sing 231 n n 
C20 C19 M7N doub 232 n y 
C20 C5 M7N sing 233 n y 
C4 C5 M7N sing 234 n n 
C19 C8 M7N sing 235 n y 
C5 C6 M7N doub 236 n y 
C8 C9 M7N sing 237 n n 
C8 C7 M7N doub 238 n y 
C6 C7 M7N sing 239 n y 
C9 N1 M7N sing 240 n n 
O C10 M7N doub 241 n n 
N1 C10 M7N sing 242 n n 
C10 N2 M7N sing 243 n n 
N2 C11 M7N sing 244 n n 
N2 C13 M7N sing 245 n n 
C11 C12 M7N sing 246 n n 
C13 C14 M7N sing 247 n n 
C12 N3 M7N sing 248 n n 
C14 N3 M7N sing 249 n n 
N3 C15 M7N sing 250 n n 
C15 N4 M7N doub 251 n y 
C15 N5 M7N sing 252 n y 
N4 C16 M7N sing 253 n y 
N5 C18 M7N doub 254 n y 
C16 C17 M7N doub 255 n y 
C18 C17 M7N sing 256 n y 
C7 H1 M7N sing 257 n n 
C6 H2 M7N sing 258 n n 
C4 H3 M7N sing 259 n n 
C4 H4 M7N sing 260 n n 
C3 H5 M7N sing 261 n n 
C3 H6 M7N sing 262 n n 
C3 H7 M7N sing 263 n n 
C2 H8 M7N sing 264 n n 
C2 H9 M7N sing 265 n n 
C1 H10 M7N sing 266 n n 
C1 H11 M7N sing 267 n n 
C9 H12 M7N sing 268 n n 
C9 H13 M7N sing 269 n n 
C11 H14 M7N sing 270 n n 
C11 H15 M7N sing 271 n n 
N1 H16 M7N sing 272 n n 
C12 H17 M7N sing 273 n n 
C12 H18 M7N sing 274 n n 
C13 H19 M7N sing 275 n n 
C13 H20 M7N sing 276 n n 
C14 H21 M7N sing 277 n n 
C14 H22 M7N sing 278 n n 
C16 H23 M7N sing 279 n n 
C17 H24 M7N sing 280 n n 
C18 H25 M7N sing 281 n n 
C19 H26 M7N sing 282 n n 
C20 H27 M7N sing 283 n n 
C H29 M7N sing 284 n n 
C H30 M7N sing 285 n n 
C H31 M7N sing 286 n n 
#
_atom_sites.entry_id                     6T1L 
_atom_sites.fract_transf_matrix[1][1]    0.020376 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020376 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007593 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 201 1 EDO EDO . 
C 2 EDO A 1 202 2 EDO EDO . 
D 2 EDO A 1 203 3 EDO EDO . 
E 2 EDO A 1 204 4 EDO EDO . 
F 2 EDO A 1 205 5 EDO EDO . 
G 2 EDO A 1 206 6 EDO EDO . 
H 2 EDO A 1 207 7 EDO EDO . 
I 2 EDO A 1 208 8 EDO EDO . 
J 2 EDO A 1 209 9 EDO EDO . 
K 2 EDO A 1 210 10 EDO EDO . 
L 3 M7N A 1 211 1 M7N ULA . 
M 4 HOH A 1 301 48 HOH HOH . 
M 4 HOH A 2 302 50 HOH HOH . 
M 4 HOH A 3 303 2 HOH HOH . 
M 4 HOH A 4 304 52 HOH HOH . 
M 4 HOH A 5 305 54 HOH HOH . 
M 4 HOH A 6 306 35 HOH HOH . 
M 4 HOH A 7 307 39 HOH HOH . 
M 4 HOH A 8 308 28 HOH HOH . 
M 4 HOH A 9 309 32 HOH HOH . 
M 4 HOH A 10 310 17 HOH HOH . 
M 4 HOH A 11 311 36 HOH HOH . 
M 4 HOH A 12 312 37 HOH HOH . 
M 4 HOH A 13 313 14 HOH HOH . 
M 4 HOH A 14 314 31 HOH HOH . 
M 4 HOH A 15 315 49 HOH HOH . 
M 4 HOH A 16 316 40 HOH HOH . 
M 4 HOH A 17 317 12 HOH HOH . 
M 4 HOH A 18 318 45 HOH HOH . 
M 4 HOH A 19 319 23 HOH HOH . 
M 4 HOH A 20 320 1 HOH HOH . 
M 4 HOH A 21 321 47 HOH HOH . 
M 4 HOH A 22 322 34 HOH HOH . 
M 4 HOH A 23 323 20 HOH HOH . 
M 4 HOH A 24 324 5 HOH HOH . 
M 4 HOH A 25 325 3 HOH HOH . 
M 4 HOH A 26 326 18 HOH HOH . 
M 4 HOH A 27 327 7 HOH HOH . 
M 4 HOH A 28 328 10 HOH HOH . 
M 4 HOH A 29 329 19 HOH HOH . 
M 4 HOH A 30 330 6 HOH HOH . 
M 4 HOH A 31 331 33 HOH HOH . 
M 4 HOH A 32 332 4 HOH HOH . 
M 4 HOH A 33 333 24 HOH HOH . 
M 4 HOH A 34 334 46 HOH HOH . 
M 4 HOH A 35 335 9 HOH HOH . 
M 4 HOH A 36 336 53 HOH HOH . 
M 4 HOH A 37 337 51 HOH HOH . 
M 4 HOH A 38 338 44 HOH HOH . 
M 4 HOH A 39 339 21 HOH HOH . 
M 4 HOH A 40 340 22 HOH HOH . 
M 4 HOH A 41 341 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 M7N . . . L 3 3.211 15.878 13.132 1 79.48 ? C7 M7N 211 A 1 
HETATM 2 C C6 M7N . . . L 3 4.478 16.275 12.734 1 82.07 ? C6 M7N 211 A 1 
HETATM 3 C C5 M7N . . . L 3 5.224 15.502 11.852 1 89.07 ? C5 M7N 211 A 1 
HETATM 4 C C4 M7N . . . L 3 6.643 15.886 11.49 1 96.57 ? C4 M7N 211 A 1 
HETATM 5 C C3 M7N . . . L 3 6.43 17.316 7.966 1 102.6 ? C3 M7N 211 A 1 
HETATM 6 C C2 M7N . . . L 3 5.995 16.915 9.365 1 105.14 ? C2 M7N 211 A 1 
HETATM 7 C C1 M7N . . . L 3 7.13 14.613 9.425 1 105.45 ? C1 M7N 211 A 1 
HETATM 8 C C8 M7N . . . L 3 2.649 14.702 12.651 1 75.03 ? C8 M7N 211 A 1 
HETATM 9 C C9 M7N . . . L 3 1.224 14.313 12.96 1 68.29 ? C9 M7N 211 A 1 
HETATM 10 C C10 M7N . . . L 3 -0.689 15.17 14.191 1 71.8 ? C10 M7N 211 A 1 
HETATM 11 C C11 M7N . . . L 3 -2.617 14.989 15.685 1 84.17 ? C11 M7N 211 A 1 
HETATM 12 N N1 M7N . . . L 3 0.643 14.965 14.124 1 65.18 ? N1 M7N 211 A 1 
HETATM 13 C C12 M7N . . . L 3 -2.86 14.753 17.181 1 88.54 ? C12 M7N 211 A 1 
HETATM 14 C C13 M7N . . . L 3 -0.781 16.476 16.263 1 84.67 ? C13 M7N 211 A 1 
HETATM 15 C C14 M7N . . . L 3 -1.023 16.184 17.726 1 87.64 ? C14 M7N 211 A 1 
HETATM 16 N N2 M7N . . . L 3 -1.209 15.337 15.443 1 80.09 ? N2 M7N 211 A 1 
HETATM 17 C C15 M7N . . . L 3 -3.04 16.237 19.164 1 98.38 ? C15 M7N 211 A 1 
HETATM 18 C C16 M7N . . . L 3 -4.571 15.744 20.772 1 96.37 ? C16 M7N 211 A 1 
HETATM 19 N N3 M7N . . . L 3 -2.444 15.921 17.964 1 93.12 ? N3 M7N 211 A 1 
HETATM 20 C C17 M7N . . . L 3 -4.296 16.918 21.43 1 96.98 ? C17 M7N 211 A 1 
HETATM 21 C C18 M7N . . . L 3 -3.343 17.724 20.86 1 95.32 ? C18 M7N 211 A 1 
HETATM 22 C C19 M7N . . . L 3 3.402 13.926 11.784 1 80.95 ? C19 M7N 211 A 1 
HETATM 23 C C20 M7N . . . L 3 4.667 14.319 11.39 1 84.44 ? C20 M7N 211 A 1 
HETATM 24 N N4 M7N . . . L 3 -3.965 15.37 19.636 1 97.22 ? N4 M7N 211 A 1 
HETATM 25 O O M7N . . . L 3 -1.401 15.183 13.194 1 65.66 ? O M7N 211 A 1 
HETATM 26 N N5 M7N . . . L 3 -2.691 17.416 19.729 1 98.13 ? N5 M7N 211 A 1 
HETATM 27 N N M7N . . . L 3 6.917 15.974 10.039 1 104.17 ? N M7N 211 A 1 
HETATM 28 C C M7N . . . L 3 6.12 14.206 8.355 1 100.8 ? C M7N 211 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           28 
#