data_6T1N # _model_server_result.job_id lZJKs_f-APZ-yxqOlKeNug _model_server_result.datetime_utc '2024-11-28 00:12:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6T1N # _exptl.entry_id 6T1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 368.86 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-chloranyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T1N _cell.length_a 49.014 _cell.length_b 49.014 _cell.length_c 132.425 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H21 Cl N4 O' _chem_comp.formula_weight 368.86 _chem_comp.id M7Z _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloranyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C M7Z sing 227 n n C5 C M7Z doub 228 n y C5 C4 M7Z sing 229 n y C C1 M7Z sing 230 n y C4 C3 M7Z doub 231 n y C1 C2 M7Z doub 232 n y O C6 M7Z doub 233 n n C3 C2 M7Z sing 234 n y C3 C6 M7Z sing 235 n n C6 N M7Z sing 236 n n N C7 M7Z sing 237 n n C19 C7 M7Z doub 238 n y C19 C18 M7Z sing 239 n y C7 C8 M7Z sing 240 n y N3 C18 M7Z sing 241 n y N3 C11 M7Z sing 242 n y C18 C10 M7Z doub 243 n y C8 C9 M7Z doub 244 n y C11 C12 M7Z sing 245 n n C11 N1 M7Z doub 246 n y C10 C9 M7Z sing 247 n y C10 N1 M7Z sing 248 n y C12 N2 M7Z sing 249 n n C17 N2 M7Z sing 250 n n C17 C16 M7Z sing 251 n n N2 C13 M7Z sing 252 n n C16 C15 M7Z sing 253 n n C13 C14 M7Z sing 254 n n C15 C14 M7Z sing 255 n n C1 H1 M7Z sing 256 n n C2 H2 M7Z sing 257 n n C4 H4 M7Z sing 258 n n C5 H5 M7Z sing 259 n n C8 H6 M7Z sing 260 n n C9 H7 M7Z sing 261 n n C12 H8 M7Z sing 262 n n C12 H9 M7Z sing 263 n n C13 H10 M7Z sing 264 n n C13 H11 M7Z sing 265 n n C14 H12 M7Z sing 266 n n C14 H13 M7Z sing 267 n n C15 H14 M7Z sing 268 n n C15 H15 M7Z sing 269 n n C16 H16 M7Z sing 270 n n C16 H17 M7Z sing 271 n n C17 H18 M7Z sing 272 n n C17 H19 M7Z sing 273 n n C19 H20 M7Z sing 274 n n N H21 M7Z sing 275 n n N3 H22 M7Z sing 276 n n # _atom_sites.entry_id 6T1N _atom_sites.fract_transf_matrix[1][1] 0.020402 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M7Z A 1 201 1 M7Z SPL . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 3 EDO A 1 205 4 EDO EDO . G 3 EDO A 1 206 5 EDO EDO . H 3 EDO A 1 207 6 EDO EDO . I 3 EDO A 1 208 7 EDO EDO . J 4 HOH A 1 301 81 HOH HOH . J 4 HOH A 2 302 68 HOH HOH . J 4 HOH A 3 303 42 HOH HOH . J 4 HOH A 4 304 78 HOH HOH . J 4 HOH A 5 305 74 HOH HOH . J 4 HOH A 6 306 10 HOH HOH . J 4 HOH A 7 307 49 HOH HOH . J 4 HOH A 8 308 60 HOH HOH . J 4 HOH A 9 309 80 HOH HOH . J 4 HOH A 10 310 72 HOH HOH . J 4 HOH A 11 311 38 HOH HOH . J 4 HOH A 12 312 20 HOH HOH . J 4 HOH A 13 313 57 HOH HOH . J 4 HOH A 14 314 35 HOH HOH . J 4 HOH A 15 315 47 HOH HOH . J 4 HOH A 16 316 79 HOH HOH . J 4 HOH A 17 317 14 HOH HOH . J 4 HOH A 18 318 8 HOH HOH . J 4 HOH A 19 319 15 HOH HOH . J 4 HOH A 20 320 46 HOH HOH . J 4 HOH A 21 321 22 HOH HOH . J 4 HOH A 22 322 32 HOH HOH . J 4 HOH A 23 323 19 HOH HOH . J 4 HOH A 24 324 12 HOH HOH . J 4 HOH A 25 325 53 HOH HOH . J 4 HOH A 26 326 7 HOH HOH . J 4 HOH A 27 327 30 HOH HOH . J 4 HOH A 28 328 43 HOH HOH . J 4 HOH A 29 329 29 HOH HOH . J 4 HOH A 30 330 75 HOH HOH . J 4 HOH A 31 331 5 HOH HOH . J 4 HOH A 32 332 24 HOH HOH . J 4 HOH A 33 333 51 HOH HOH . J 4 HOH A 34 334 23 HOH HOH . J 4 HOH A 35 335 45 HOH HOH . J 4 HOH A 36 336 11 HOH HOH . J 4 HOH A 37 337 70 HOH HOH . J 4 HOH A 38 338 36 HOH HOH . J 4 HOH A 39 339 44 HOH HOH . J 4 HOH A 40 340 13 HOH HOH . J 4 HOH A 41 341 39 HOH HOH . J 4 HOH A 42 342 26 HOH HOH . J 4 HOH A 43 343 41 HOH HOH . J 4 HOH A 44 344 9 HOH HOH . J 4 HOH A 45 345 37 HOH HOH . J 4 HOH A 46 346 69 HOH HOH . J 4 HOH A 47 347 31 HOH HOH . J 4 HOH A 48 348 1 HOH HOH . J 4 HOH A 49 349 52 HOH HOH . J 4 HOH A 50 350 4 HOH HOH . J 4 HOH A 51 351 67 HOH HOH . J 4 HOH A 52 352 40 HOH HOH . J 4 HOH A 53 353 27 HOH HOH . J 4 HOH A 54 354 25 HOH HOH . J 4 HOH A 55 355 55 HOH HOH . J 4 HOH A 56 356 56 HOH HOH . J 4 HOH A 57 357 18 HOH HOH . J 4 HOH A 58 358 66 HOH HOH . J 4 HOH A 59 359 6 HOH HOH . J 4 HOH A 60 360 33 HOH HOH . J 4 HOH A 61 361 76 HOH HOH . J 4 HOH A 62 362 2 HOH HOH . J 4 HOH A 63 363 34 HOH HOH . J 4 HOH A 64 364 64 HOH HOH . J 4 HOH A 65 365 73 HOH HOH . J 4 HOH A 66 366 77 HOH HOH . J 4 HOH A 67 367 63 HOH HOH . J 4 HOH A 68 368 61 HOH HOH . J 4 HOH A 69 369 65 HOH HOH . J 4 HOH A 70 370 17 HOH HOH . J 4 HOH A 71 371 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 M7Z . . . B 2 4.034 15.815 13.792 1 44.15 ? C1 M7Z 201 A 1 HETATM 2 C C2 M7Z . . . B 2 2.79 15.819 14.406 1 42.76 ? C2 M7Z 201 A 1 HETATM 3 N N2 M7Z . . . B 2 -6.626 12.975 19.39 1 52.47 ? N2 M7Z 201 A 1 HETATM 4 C C3 M7Z . . . B 2 1.78 14.952 13.985 1 42.54 ? C3 M7Z 201 A 1 HETATM 5 C C4 M7Z . . . B 2 2.051 14.066 12.944 1 43.32 ? C4 M7Z 201 A 1 HETATM 6 C C5 M7Z . . . B 2 3.29 14.058 12.323 1 44.97 ? C5 M7Z 201 A 1 HETATM 7 C C6 M7Z . . . B 2 0.403 15.026 14.575 1 42.38 ? C6 M7Z 201 A 1 HETATM 8 C C7 M7Z . . . B 2 -0.788 15.248 16.774 1 40.48 ? C7 M7Z 201 A 1 HETATM 9 C C8 M7Z . . . B 2 -0.595 15.666 18.103 1 41.52 ? C8 M7Z 201 A 1 HETATM 10 C C9 M7Z . . . B 2 -1.63 15.587 19.026 1 42.76 ? C9 M7Z 201 A 1 HETATM 11 C C10 M7Z . . . B 2 -2.86 15.101 18.606 1 42.45 ? C10 M7Z 201 A 1 HETATM 12 C C11 M7Z . . . B 2 -4.951 14.449 18.353 1 47.02 ? C11 M7Z 201 A 1 HETATM 13 C C12 M7Z . . . B 2 -6.396 14.238 18.677 1 48.41 ? C12 M7Z 201 A 1 HETATM 14 C C13 M7Z . . . B 2 -6.269 13.101 20.817 1 53.66 ? C13 M7Z 201 A 1 HETATM 15 C C14 M7Z . . . B 2 -6.473 11.79 21.576 1 56.16 ? C14 M7Z 201 A 1 HETATM 16 C C15 M7Z . . . B 2 -7.897 11.289 21.431 1 56.73 ? C15 M7Z 201 A 1 HETATM 17 C C16 M7Z . . . B 2 -8.302 11.243 19.968 1 56.43 ? C16 M7Z 201 A 1 HETATM 18 C C17 M7Z . . . B 2 -8.04 12.575 19.287 1 54.21 ? C17 M7Z 201 A 1 HETATM 19 C C18 M7Z . . . B 2 -3.079 14.691 17.297 1 43.06 ? C18 M7Z 201 A 1 HETATM 20 C C19 M7Z . . . B 2 -2.038 14.763 16.363 1 41.03 ? C19 M7Z 201 A 1 HETATM 21 O O M7Z . . . B 2 -0.592 14.911 13.863 1 38.07 ? O M7Z 201 A 1 HETATM 22 C C M7Z . . . B 2 4.268 14.942 12.754 1 47.47 ? C M7Z 201 A 1 HETATM 23 CL CL M7Z . . . B 2 5.833 14.947 11.961 1 45.91 ? CL M7Z 201 A 1 HETATM 24 N N M7Z . . . B 2 0.348 15.274 15.915 1 40.21 ? N M7Z 201 A 1 HETATM 25 N N3 M7Z . . . B 2 -4.412 14.274 17.158 1 43.18 ? N3 M7Z 201 A 1 HETATM 26 N N1 M7Z . . . B 2 -4.072 14.936 19.259 1 43.24 ? N1 M7Z 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #