data_6T1Z
#
_model_server_result.job_id            hZ0q1LsOJ5UiXhktO_Ul8A 
_model_server_result.datetime_utc      '2025-02-17 22:27:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t1z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    6T1Z 
#
_exptl.entry_id    6T1Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              591.777 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6T1Z 
_cell.length_a            104.76 
_cell.length_b            139.99 
_cell.length_c            115.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T1Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
_chem_comp.formula           'C31 H60 O8 P -1' 
_chem_comp.formula_weight    591.777 
_chem_comp.id                XP4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 XP4 sing 538 n n 
O2 P1 XP4 doub 539 n n 
P1 O3 XP4 sing 540 n n 
P1 O4 XP4 sing 541 n n 
O3 H1 XP4 sing 542 n n 
O4 C1 XP4 sing 543 n n 
C1 C2 XP4 sing 544 n n 
C1 H2 XP4 sing 545 n n 
C1 H3 XP4 sing 546 n n 
C2 C3 XP4 sing 547 n n 
C2 O7 XP4 sing 548 n n 
C2 H4 XP4 sing 549 n n 
C3 O5 XP4 sing 550 n n 
C3 H5 XP4 sing 551 n n 
C3 H6 XP4 sing 552 n n 
O5 C4 XP4 sing 553 n n 
C4 O6 XP4 doub 554 n n 
C4 C5 XP4 sing 555 n n 
C5 C6 XP4 sing 556 n n 
C5 H7 XP4 sing 557 n n 
C5 H8 XP4 sing 558 n n 
C6 C7 XP4 sing 559 n n 
C6 H9 XP4 sing 560 n n 
C6 H10 XP4 sing 561 n n 
C7 C8 XP4 sing 562 n n 
C7 H11 XP4 sing 563 n n 
C7 H12 XP4 sing 564 n n 
C8 C9 XP4 sing 565 n n 
C8 H13 XP4 sing 566 n n 
C8 H14 XP4 sing 567 n n 
C9 C10 XP4 sing 568 n n 
C9 H15 XP4 sing 569 n n 
C9 H16 XP4 sing 570 n n 
C10 C11 XP4 sing 571 n n 
C10 H17 XP4 sing 572 n n 
C10 H18 XP4 sing 573 n n 
C11 C12 XP4 sing 574 n n 
C11 H19 XP4 sing 575 n n 
C11 H20 XP4 sing 576 n n 
C12 C13 XP4 sing 577 n n 
C12 H21 XP4 sing 578 n n 
C12 H22 XP4 sing 579 n n 
C13 C14 XP4 sing 580 n n 
C13 H23 XP4 sing 581 n n 
C13 H24 XP4 sing 582 n n 
C14 C15 XP4 sing 583 n n 
C14 H25 XP4 sing 584 n n 
C14 H26 XP4 sing 585 n n 
C15 C16 XP4 sing 586 n n 
C15 H27 XP4 sing 587 n n 
C15 H28 XP4 sing 588 n n 
C16 C17 XP4 sing 589 n n 
C16 H29 XP4 sing 590 n n 
C16 H30 XP4 sing 591 n n 
C17 H31 XP4 sing 592 n n 
C17 H32 XP4 sing 593 n n 
C17 H33 XP4 sing 594 n n 
O7 C18 XP4 sing 595 n n 
C18 O8 XP4 doub 596 n n 
C18 C19 XP4 sing 597 n n 
C19 C20 XP4 sing 598 n n 
C19 H34 XP4 sing 599 n n 
C19 H35 XP4 sing 600 n n 
C20 C21 XP4 sing 601 n n 
C20 H36 XP4 sing 602 n n 
C20 H37 XP4 sing 603 n n 
C21 C22 XP4 sing 604 n n 
C21 H38 XP4 sing 605 n n 
C21 H39 XP4 sing 606 n n 
C22 C23 XP4 sing 607 n n 
C22 H40 XP4 sing 608 n n 
C22 H41 XP4 sing 609 n n 
C23 C24 XP4 sing 610 n n 
C23 H42 XP4 sing 611 n n 
C23 H43 XP4 sing 612 n n 
C24 C25 XP4 sing 613 n n 
C24 H44 XP4 sing 614 n n 
C24 H45 XP4 sing 615 n n 
C25 C26 XP4 sing 616 n n 
C25 H46 XP4 sing 617 n n 
C25 H47 XP4 sing 618 n n 
C26 C27 XP4 sing 619 n n 
C26 H48 XP4 sing 620 n n 
C26 H49 XP4 sing 621 n n 
C27 C28 XP4 sing 622 n n 
C27 H50 XP4 sing 623 n n 
C27 H51 XP4 sing 624 n n 
C28 C29 XP4 sing 625 n n 
C28 H52 XP4 sing 626 n n 
C28 H53 XP4 sing 627 n n 
C29 C30 XP4 sing 628 n n 
C29 H54 XP4 sing 629 n n 
C29 H55 XP4 sing 630 n n 
C30 C31 XP4 sing 631 n n 
C30 H56 XP4 sing 632 n n 
C30 H57 XP4 sing 633 n n 
C31 H58 XP4 sing 634 n n 
C31 H59 XP4 sing 635 n n 
C31 H60 XP4 sing 636 n n 
#
_atom_sites.entry_id                     6T1Z 
_atom_sites.fract_transf_matrix[1][1]    0.009546 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008643 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HT1 A 1 501 1 HT1 HT1 . 
C 3 XP4 A 1 502 1 XP4 XP4 . 
D 3 XP4 A 1 503 2 XP4 XP4 . 
E 4 LMU A 1 504 1 LMU LMU . 
F 4 LMU A 1 505 2 LMU LMU . 
G 5 GOL A 1 506 1 GOL GOL . 
H 6 HOH A 1 601 2 HOH HOH . 
H 6 HOH A 2 602 3 HOH HOH . 
H 6 HOH A 3 603 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 XP4 . . . C 3 2.742 28.518 4.078 1 140.77 ? O1 XP4 502 A 1 
HETATM 2 O O2 XP4 . . . C 3 3.824 26.738 5.574 1 141.27 ? O2 XP4 502 A 1 
HETATM 3 P P1 XP4 . . . C 3 2.563 27.415 5.082 1 139.28 ? P1 XP4 502 A 1 
HETATM 4 O O3 XP4 . . . C 3 1.492 26.389 4.565 1 137.87 ? O3 XP4 502 A 1 
HETATM 5 O O4 XP4 . . . C 3 1.905 28.105 6.359 1 132.46 ? O4 XP4 502 A 1 
HETATM 6 C C1 XP4 . . . C 3 0.555 28.584 6.282 1 123.95 ? C1 XP4 502 A 1 
HETATM 7 C C2 XP4 . . . C 3 -0.175 28.19 7.534 1 114.24 ? C2 XP4 502 A 1 
HETATM 8 C C3 XP4 . . . C 3 -1.081 29.339 7.872 1 104.07 ? C3 XP4 502 A 1 
HETATM 9 O O5 XP4 . . . C 3 -2.217 29.056 8.719 1 94.13 ? O5 XP4 502 A 1 
HETATM 10 C C4 XP4 . . . C 3 -3.222 29.943 8.693 1 84.32 ? C4 XP4 502 A 1 
HETATM 11 O O6 XP4 . . . C 3 -3.416 30.7 7.784 1 84.98 ? O6 XP4 502 A 1 
HETATM 12 C C5 XP4 . . . C 3 -4.018 29.937 9.969 1 75.51 ? C5 XP4 502 A 1 
HETATM 13 C C6 XP4 . . . C 3 -4.805 28.668 10.225 1 69.84 ? C6 XP4 502 A 1 
HETATM 14 C C7 XP4 . . . C 3 -3.95 27.417 10.115 1 63.43 ? C7 XP4 502 A 1 
HETATM 15 C C8 XP4 . . . C 3 -3.647 26.805 11.452 1 60.64 ? C8 XP4 502 A 1 
HETATM 16 C C9 XP4 . . . C 3 -3.059 25.43 11.29 1 61.71 ? C9 XP4 502 A 1 
HETATM 17 C C10 XP4 . . . C 3 -3.063 24.671 12.602 1 64.97 ? C10 XP4 502 A 1 
HETATM 18 C C11 XP4 . . . C 3 -2.725 23.2 12.432 1 65.37 ? C11 XP4 502 A 1 
HETATM 19 C C12 XP4 . . . C 3 -2.972 22.339 13.657 1 61.58 ? C12 XP4 502 A 1 
HETATM 20 C C13 XP4 . . . C 3 -1.896 22.391 14.718 1 58.43 ? C13 XP4 502 A 1 
HETATM 21 C C14 XP4 . . . C 3 -1.959 21.177 15.627 1 57.93 ? C14 XP4 502 A 1 
HETATM 22 C C15 XP4 . . . C 3 -0.691 20.907 16.428 1 57.79 ? C15 XP4 502 A 1 
HETATM 23 O O7 XP4 . . . C 3 -0.904 26.967 7.176 1 114.13 ? O7 XP4 502 A 1 
HETATM 24 C C18 XP4 . . . C 3 -0.229 25.791 7.158 1 111.04 ? C18 XP4 502 A 1 
HETATM 25 O O8 XP4 . . . C 3 0.834 25.615 7.702 1 111.99 ? O8 XP4 502 A 1 
HETATM 26 C C19 XP4 . . . C 3 -0.966 24.743 6.37 1 105.23 ? C19 XP4 502 A 1 
HETATM 27 C C20 XP4 . . . C 3 -2.019 24 7.188 1 99.47 ? C20 XP4 502 A 1 
HETATM 28 C C21 XP4 . . . C 3 -1.824 22.485 7.257 1 93.74 ? C21 XP4 502 A 1 
HETATM 29 C C22 XP4 . . . C 3 -1.807 21.795 5.903 1 89.8 ? C22 XP4 502 A 1 
HETATM 30 C C23 XP4 . . . C 3 -2.215 20.328 5.867 1 85.27 ? C23 XP4 502 A 1 
HETATM 31 C C24 XP4 . . . C 3 -1.935 19.626 4.537 1 81.53 ? C24 XP4 502 A 1 
HETATM 32 C C25 XP4 . . . C 3 -2.12 20.45 3.271 1 78.64 ? C25 XP4 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           32 
#