data_6T28 # _model_server_result.job_id cK_bxFB_DQPK0-53GnYmvw _model_server_result.datetime_utc '2024-11-16 15:57:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 6T28 # _exptl.entry_id 6T28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.517 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(3~{S})-3-azanylpiperidin-1-yl]-4-[[2,6-di(propan-2-yl)pyridin-4-yl]amino]pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.439 _cell.angle_gamma 90 _cell.entry_id 6T28 _cell.length_a 57.64 _cell.length_b 45.62 _cell.length_c 108.949 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H31 N7 O' _chem_comp.formula_weight 397.517 _chem_comp.id M92 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(3~{S})-3-azanylpiperidin-1-yl]-4-[[2,6-di(propan-2-yl)pyridin-4-yl]amino]pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C8 M92 sing 227 n n C8 C7 M92 sing 228 n n C8 C9 M92 sing 229 n n N C7 M92 doub 230 n y N C3 M92 sing 231 n y C7 C6 M92 sing 232 n y C C1 M92 sing 233 n n C1 C3 M92 sing 234 n n C1 C2 M92 sing 235 n n C3 C4 M92 doub 236 n y C6 C5 M92 doub 237 n y C17 C18 M92 sing 238 n n C17 C16 M92 sing 239 n n C4 C5 M92 sing 240 n y C5 N1 M92 sing 241 n n C18 C19 M92 sing 242 n n N1 C11 M92 sing 243 n n C16 N5 M92 sing 244 n n C11 N2 M92 doub 245 n y C11 C14 M92 sing 246 n y N2 C12 M92 sing 247 n y C19 N6 M92 sing 248 n n C19 C20 M92 sing 249 n n O C15 M92 doub 250 n n C14 C15 M92 sing 251 n n C14 C13 M92 doub 252 n y N5 C12 M92 sing 253 n n N5 C20 M92 sing 254 n n C15 N4 M92 sing 255 n n C12 N3 M92 doub 256 n y C13 N3 M92 sing 257 n y N4 H1 M92 sing 258 n n N4 H2 M92 sing 259 n n C13 H3 M92 sing 260 n n C20 H4 M92 sing 261 n n C20 H5 M92 sing 262 n n C19 H6 M92 sing 263 n n N6 H7 M92 sing 264 n n N6 H8 M92 sing 265 n n C18 H10 M92 sing 266 n n C18 H11 M92 sing 267 n n C17 H12 M92 sing 268 n n C17 H13 M92 sing 269 n n C16 H14 M92 sing 270 n n C16 H15 M92 sing 271 n n N1 H16 M92 sing 272 n n C4 H17 M92 sing 273 n n C6 H18 M92 sing 274 n n C8 H19 M92 sing 275 n n C10 H20 M92 sing 276 n n C10 H21 M92 sing 277 n n C10 H22 M92 sing 278 n n C9 H23 M92 sing 279 n n C9 H24 M92 sing 280 n n C9 H25 M92 sing 281 n n C1 H26 M92 sing 282 n n C2 H27 M92 sing 283 n n C2 H28 M92 sing 284 n n C2 H29 M92 sing 285 n n C H30 M92 sing 286 n n C H31 M92 sing 287 n n C H32 M92 sing 288 n n # _atom_sites.entry_id 6T28 _atom_sites.fract_transf_matrix[1][1] 0.017349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004467 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02192 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009478 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 AAA 1 401 303 SO4 SO4 . C 3 EDO AAA 1 402 1 EDO EDO . D 3 EDO AAA 1 403 3 EDO EDO . E 3 EDO AAA 1 404 4 EDO EDO . F 2 SO4 AAA 1 405 1 SO4 SO4 . G 2 SO4 AAA 1 406 2 SO4 SO4 . H 4 M92 AAA 1 407 1 M92 640 . I 5 HOH AAA 1 501 139 HOH HOH . I 5 HOH AAA 2 502 57 HOH HOH . I 5 HOH AAA 3 503 128 HOH HOH . I 5 HOH AAA 4 504 48 HOH HOH . I 5 HOH AAA 5 505 56 HOH HOH . I 5 HOH AAA 6 506 46 HOH HOH . I 5 HOH AAA 7 507 127 HOH HOH . I 5 HOH AAA 8 508 100 HOH HOH . I 5 HOH AAA 9 509 110 HOH HOH . I 5 HOH AAA 10 510 81 HOH HOH . I 5 HOH AAA 11 511 93 HOH HOH . I 5 HOH AAA 12 512 114 HOH HOH . I 5 HOH AAA 13 513 63 HOH HOH . I 5 HOH AAA 14 514 123 HOH HOH . I 5 HOH AAA 15 515 37 HOH HOH . I 5 HOH AAA 16 516 115 HOH HOH . I 5 HOH AAA 17 517 34 HOH HOH . I 5 HOH AAA 18 518 16 HOH HOH . I 5 HOH AAA 19 519 10 HOH HOH . I 5 HOH AAA 20 520 2 HOH HOH . I 5 HOH AAA 21 521 5 HOH HOH . I 5 HOH AAA 22 522 3 HOH HOH . I 5 HOH AAA 23 523 69 HOH HOH . I 5 HOH AAA 24 524 88 HOH HOH . I 5 HOH AAA 25 525 61 HOH HOH . I 5 HOH AAA 26 526 111 HOH HOH . I 5 HOH AAA 27 527 64 HOH HOH . I 5 HOH AAA 28 528 54 HOH HOH . I 5 HOH AAA 29 529 138 HOH HOH . I 5 HOH AAA 30 530 73 HOH HOH . I 5 HOH AAA 31 531 13 HOH HOH . I 5 HOH AAA 32 532 112 HOH HOH . I 5 HOH AAA 33 533 58 HOH HOH . I 5 HOH AAA 34 534 18 HOH HOH . I 5 HOH AAA 35 535 101 HOH HOH . I 5 HOH AAA 36 536 76 HOH HOH . I 5 HOH AAA 37 537 22 HOH HOH . I 5 HOH AAA 38 538 70 HOH HOH . I 5 HOH AAA 39 539 122 HOH HOH . I 5 HOH AAA 40 540 9 HOH HOH . I 5 HOH AAA 41 541 59 HOH HOH . I 5 HOH AAA 42 542 36 HOH HOH . I 5 HOH AAA 43 543 68 HOH HOH . I 5 HOH AAA 44 544 98 HOH HOH . I 5 HOH AAA 45 545 91 HOH HOH . I 5 HOH AAA 46 546 24 HOH HOH . I 5 HOH AAA 47 547 39 HOH HOH . I 5 HOH AAA 48 548 92 HOH HOH . I 5 HOH AAA 49 549 125 HOH HOH . I 5 HOH AAA 50 550 41 HOH HOH . I 5 HOH AAA 51 551 19 HOH HOH . I 5 HOH AAA 52 552 28 HOH HOH . I 5 HOH AAA 53 553 65 HOH HOH . I 5 HOH AAA 54 554 83 HOH HOH . I 5 HOH AAA 55 555 44 HOH HOH . I 5 HOH AAA 56 556 80 HOH HOH . I 5 HOH AAA 57 557 26 HOH HOH . I 5 HOH AAA 58 558 89 HOH HOH . I 5 HOH AAA 59 559 32 HOH HOH . I 5 HOH AAA 60 560 109 HOH HOH . I 5 HOH AAA 61 561 79 HOH HOH . I 5 HOH AAA 62 562 1 HOH HOH . I 5 HOH AAA 63 563 52 HOH HOH . I 5 HOH AAA 64 564 55 HOH HOH . I 5 HOH AAA 65 565 82 HOH HOH . I 5 HOH AAA 66 566 6 HOH HOH . I 5 HOH AAA 67 567 78 HOH HOH . I 5 HOH AAA 68 568 133 HOH HOH . I 5 HOH AAA 69 569 126 HOH HOH . I 5 HOH AAA 70 570 40 HOH HOH . I 5 HOH AAA 71 571 12 HOH HOH . I 5 HOH AAA 72 572 50 HOH HOH . I 5 HOH AAA 73 573 108 HOH HOH . I 5 HOH AAA 74 574 25 HOH HOH . I 5 HOH AAA 75 575 14 HOH HOH . I 5 HOH AAA 76 576 94 HOH HOH . I 5 HOH AAA 77 577 15 HOH HOH . I 5 HOH AAA 78 578 105 HOH HOH . I 5 HOH AAA 79 579 27 HOH HOH . I 5 HOH AAA 80 580 136 HOH HOH . I 5 HOH AAA 81 581 8 HOH HOH . I 5 HOH AAA 82 582 53 HOH HOH . I 5 HOH AAA 83 583 11 HOH HOH . I 5 HOH AAA 84 584 43 HOH HOH . I 5 HOH AAA 85 585 62 HOH HOH . I 5 HOH AAA 86 586 107 HOH HOH . I 5 HOH AAA 87 587 49 HOH HOH . I 5 HOH AAA 88 588 95 HOH HOH . I 5 HOH AAA 89 589 47 HOH HOH . I 5 HOH AAA 90 590 38 HOH HOH . I 5 HOH AAA 91 591 75 HOH HOH . I 5 HOH AAA 92 592 71 HOH HOH . I 5 HOH AAA 93 593 31 HOH HOH . I 5 HOH AAA 94 594 30 HOH HOH . I 5 HOH AAA 95 595 21 HOH HOH . I 5 HOH AAA 96 596 33 HOH HOH . I 5 HOH AAA 97 597 85 HOH HOH . I 5 HOH AAA 98 598 84 HOH HOH . I 5 HOH AAA 99 599 4 HOH HOH . I 5 HOH AAA 100 600 29 HOH HOH . I 5 HOH AAA 101 601 60 HOH HOH . I 5 HOH AAA 102 602 23 HOH HOH . I 5 HOH AAA 103 603 20 HOH HOH . I 5 HOH AAA 104 604 137 HOH HOH . I 5 HOH AAA 105 605 121 HOH HOH . I 5 HOH AAA 106 606 104 HOH HOH . I 5 HOH AAA 107 607 45 HOH HOH . I 5 HOH AAA 108 608 132 HOH HOH . I 5 HOH AAA 109 609 106 HOH HOH . I 5 HOH AAA 110 610 42 HOH HOH . I 5 HOH AAA 111 611 135 HOH HOH . I 5 HOH AAA 112 612 74 HOH HOH . I 5 HOH AAA 113 613 17 HOH HOH . I 5 HOH AAA 114 614 116 HOH HOH . I 5 HOH AAA 115 615 72 HOH HOH . I 5 HOH AAA 116 616 131 HOH HOH . I 5 HOH AAA 117 617 124 HOH HOH . I 5 HOH AAA 118 618 51 HOH HOH . I 5 HOH AAA 119 619 130 HOH HOH . I 5 HOH AAA 120 620 120 HOH HOH . I 5 HOH AAA 121 621 134 HOH HOH . I 5 HOH AAA 122 622 77 HOH HOH . I 5 HOH AAA 123 623 103 HOH HOH . I 5 HOH AAA 124 624 118 HOH HOH . I 5 HOH AAA 125 625 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O M92 . . . H 4 -16.498 -12.315 -0.664 1 14.14 ? O M92 407 AAA 1 HETATM 2 C C15 M92 . . . H 4 -16.439 -13.507 -0.363 1 13.24 ? C15 M92 407 AAA 1 HETATM 3 N N4 M92 . . . H 4 -15.304 -14.114 0.008 1 12.39 ? N4 M92 407 AAA 1 HETATM 4 C C14 M92 . . . H 4 -17.682 -14.324 -0.403 1 12.86 ? C14 M92 407 AAA 1 HETATM 5 C C13 M92 . . . H 4 -17.746 -15.535 0.279 1 12.64 ? C13 M92 407 AAA 1 HETATM 6 N N3 M92 . . . H 4 -18.848 -16.284 0.365 1 15.2 ? N3 M92 407 AAA 1 HETATM 7 C C12 M92 . . . H 4 -19.913 -15.832 -0.319 1 16.83 ? C12 M92 407 AAA 1 HETATM 8 N N5 M92 . . . H 4 -20.977 -16.641 -0.381 1 19.81 ? N5 M92 407 AAA 1 HETATM 9 C C20 M92 . . . H 4 -20.992 -18.004 0.135 1 19.79 ? C20 M92 407 AAA 1 HETATM 10 C C19 M92 . . . H 4 -20.71 -18.96 -1.01 1 22.21 ? C19 M92 407 AAA 1 HETATM 11 N N6 M92 . . . H 4 -20.634 -20.334 -0.508 1 26.4 ? N6 M92 407 AAA 1 HETATM 12 C C18 M92 . . . H 4 -21.75 -18.782 -2.108 1 24.86 ? C18 M92 407 AAA 1 HETATM 13 C C17 M92 . . . H 4 -21.892 -17.307 -2.511 1 25.66 ? C17 M92 407 AAA 1 HETATM 14 C C16 M92 . . . H 4 -22.108 -16.419 -1.285 1 23.85 ? C16 M92 407 AAA 1 HETATM 15 N N2 M92 . . . H 4 -19.97 -14.708 -1.058 1 15.78 ? N2 M92 407 AAA 1 HETATM 16 C C11 M92 . . . H 4 -18.872 -13.936 -1.077 1 14.99 ? C11 M92 407 AAA 1 HETATM 17 N N1 M92 . . . H 4 -18.976 -12.685 -1.599 1 15.53 ? N1 M92 407 AAA 1 HETATM 18 C C5 M92 . . . H 4 -20.005 -12.019 -2.298 1 17.49 ? C5 M92 407 AAA 1 HETATM 19 C C4 M92 . . . H 4 -19.841 -10.648 -2.471 1 18.6 ? C4 M92 407 AAA 1 HETATM 20 C C6 M92 . . . H 4 -21.161 -12.642 -2.762 1 19.53 ? C6 M92 407 AAA 1 HETATM 21 C C7 M92 . . . H 4 -22.149 -11.847 -3.324 1 19.43 ? C7 M92 407 AAA 1 HETATM 22 C C8 M92 . . . H 4 -23.459 -12.439 -3.86 1 26.9 ? C8 M92 407 AAA 1 HETATM 23 C C10 M92 . . . H 4 -23.279 -13.387 -5.044 1 31.06 ? C10 M92 407 AAA 1 HETATM 24 C C9 M92 . . . H 4 -24.212 -13.117 -2.722 1 32.33 ? C9 M92 407 AAA 1 HETATM 25 N N M92 . . . H 4 -22.015 -10.519 -3.415 1 23.69 ? N M92 407 AAA 1 HETATM 26 C C3 M92 . . . H 4 -20.893 -9.919 -3.009 1 18.85 ? C3 M92 407 AAA 1 HETATM 27 C C1 M92 . . . H 4 -20.848 -8.412 -3.165 1 21.84 ? C1 M92 407 AAA 1 HETATM 28 C C2 M92 . . . H 4 -21.592 -7.771 -1.997 1 24.93 ? C2 M92 407 AAA 1 HETATM 29 C C M92 . . . H 4 -19.448 -7.827 -3.301 1 23.29 ? C M92 407 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #