data_6T2K # _model_server_result.job_id FZ5K5FkLQZ8elAv2iHsRRQ _model_server_result.datetime_utc '2024-11-29 08:05:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 6T2K # _exptl.entry_id 6T2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.784 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(6-chloranyl-7-cyclopropyl-thieno[3,2-d]pyrimidin-4-yl)sulfanylethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T2K _cell.length_a 59.62 _cell.length_b 72.13 _cell.length_c 78.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? disulf ? disulf4 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? disulf ? disulf6 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? # _chem_comp.formula 'C11 H9 Cl N2 O2 S2' _chem_comp.formula_weight 300.784 _chem_comp.id M9K _chem_comp.mon_nstd_flag . _chem_comp.name '2-(6-chloranyl-7-cyclopropyl-thieno[3,2-d]pyrimidin-4-yl)sulfanylethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C12 M9K sing 227 n n S14 C12 M9K sing 228 n y S14 C06 M9K sing 229 n y C12 C08 M9K doub 230 n y O18 C02 M9K doub 231 n n C02 O01 M9K sing 232 n n C02 C03 M9K sing 233 n n S04 C03 M9K sing 234 n n S04 C05 M9K sing 235 n n C08 C09 M9K sing 236 n n C08 C07 M9K sing 237 n y C06 C05 M9K doub 238 n y C06 C07 M9K sing 239 n y C09 C11 M9K sing 240 n n C09 C10 M9K sing 241 n n C05 N17 M9K sing 242 n y C07 N15 M9K doub 243 n y C11 C10 M9K sing 244 n n N17 C16 M9K doub 245 n y N15 C16 M9K sing 246 n y C10 H1 M9K sing 247 n n C10 H2 M9K sing 248 n n C03 H3 M9K sing 249 n n C03 H4 M9K sing 250 n n C09 H5 M9K sing 251 n n C11 H6 M9K sing 252 n n C11 H7 M9K sing 253 n n C16 H8 M9K sing 254 n n O01 H9 M9K sing 255 n n # _atom_sites.entry_id 6T2K _atom_sites.fract_transf_matrix[1][1] 0.016773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 602 SO4 SO4 . C 3 NAG A 1 502 1452 NAG NAG . D 4 M9K A 1 503 1 M9K LIG . E 2 SO4 A 1 504 1 SO4 SO4 . F 2 SO4 A 1 505 8 SO4 SO4 . G 2 SO4 A 1 506 9 SO4 SO4 . H 2 SO4 A 1 507 10 SO4 SO4 . I 5 EDO A 1 508 2 EDO EDO . J 5 EDO A 1 509 4 EDO EDO . K 5 EDO A 1 510 5 EDO EDO . L 5 EDO A 1 511 7 EDO EDO . M 6 HOH A 1 601 18 HOH HOH . M 6 HOH A 2 602 38 HOH HOH . M 6 HOH A 3 603 11 HOH HOH . M 6 HOH A 4 604 27 HOH HOH . M 6 HOH A 5 605 1086 HOH HOH . M 6 HOH A 6 606 33 HOH HOH . M 6 HOH A 7 607 26 HOH HOH . M 6 HOH A 8 608 1047 HOH HOH . M 6 HOH A 9 609 1084 HOH HOH . M 6 HOH A 10 610 20 HOH HOH . M 6 HOH A 11 611 1050 HOH HOH . M 6 HOH A 12 612 41 HOH HOH . M 6 HOH A 13 613 1196 HOH HOH . M 6 HOH A 14 614 1027 HOH HOH . M 6 HOH A 15 615 3 HOH HOH . M 6 HOH A 16 616 1051 HOH HOH . M 6 HOH A 17 617 1018 HOH HOH . M 6 HOH A 18 618 1001 HOH HOH . M 6 HOH A 19 619 1033 HOH HOH . M 6 HOH A 20 620 16 HOH HOH . M 6 HOH A 21 621 23 HOH HOH . M 6 HOH A 22 622 1197 HOH HOH . M 6 HOH A 23 623 13 HOH HOH . M 6 HOH A 24 624 1008 HOH HOH . M 6 HOH A 25 625 1036 HOH HOH . M 6 HOH A 26 626 1062 HOH HOH . M 6 HOH A 27 627 1154 HOH HOH . M 6 HOH A 28 628 1048 HOH HOH . M 6 HOH A 29 629 12 HOH HOH . M 6 HOH A 30 630 1031 HOH HOH . M 6 HOH A 31 631 1045 HOH HOH . M 6 HOH A 32 632 1046 HOH HOH . M 6 HOH A 33 633 1073 HOH HOH . M 6 HOH A 34 634 1043 HOH HOH . M 6 HOH A 35 635 1118 HOH HOH . M 6 HOH A 36 636 31 HOH HOH . M 6 HOH A 37 637 40 HOH HOH . M 6 HOH A 38 638 14 HOH HOH . M 6 HOH A 39 639 1070 HOH HOH . M 6 HOH A 40 640 1059 HOH HOH . M 6 HOH A 41 641 1149 HOH HOH . M 6 HOH A 42 642 1190 HOH HOH . M 6 HOH A 43 643 1040 HOH HOH . M 6 HOH A 44 644 1019 HOH HOH . M 6 HOH A 45 645 1124 HOH HOH . M 6 HOH A 46 646 1169 HOH HOH . M 6 HOH A 47 647 1004 HOH HOH . M 6 HOH A 48 648 1091 HOH HOH . M 6 HOH A 49 649 30 HOH HOH . M 6 HOH A 50 650 1003 HOH HOH . M 6 HOH A 51 651 24 HOH HOH . M 6 HOH A 52 652 1085 HOH HOH . M 6 HOH A 53 653 1123 HOH HOH . M 6 HOH A 54 654 10 HOH HOH . M 6 HOH A 55 655 1011 HOH HOH . M 6 HOH A 56 656 36 HOH HOH . M 6 HOH A 57 657 29 HOH HOH . M 6 HOH A 58 658 1029 HOH HOH . M 6 HOH A 59 659 17 HOH HOH . M 6 HOH A 60 660 1109 HOH HOH . M 6 HOH A 61 661 1133 HOH HOH . M 6 HOH A 62 662 1159 HOH HOH . M 6 HOH A 63 663 1082 HOH HOH . M 6 HOH A 64 664 1068 HOH HOH . M 6 HOH A 65 665 1058 HOH HOH . M 6 HOH A 66 666 1065 HOH HOH . M 6 HOH A 67 667 35 HOH HOH . M 6 HOH A 68 668 1023 HOH HOH . M 6 HOH A 69 669 1142 HOH HOH . M 6 HOH A 70 670 1087 HOH HOH . M 6 HOH A 71 671 1012 HOH HOH . M 6 HOH A 72 672 1054 HOH HOH . M 6 HOH A 73 673 1063 HOH HOH . M 6 HOH A 74 674 34 HOH HOH . M 6 HOH A 75 675 1114 HOH HOH . M 6 HOH A 76 676 5 HOH HOH . M 6 HOH A 77 677 1098 HOH HOH . M 6 HOH A 78 678 39 HOH HOH . M 6 HOH A 79 679 4 HOH HOH . M 6 HOH A 80 680 1016 HOH HOH . M 6 HOH A 81 681 1052 HOH HOH . M 6 HOH A 82 682 1038 HOH HOH . M 6 HOH A 83 683 1064 HOH HOH . M 6 HOH A 84 684 32 HOH HOH . M 6 HOH A 85 685 1020 HOH HOH . M 6 HOH A 86 686 1002 HOH HOH . M 6 HOH A 87 687 6 HOH HOH . M 6 HOH A 88 688 1078 HOH HOH . M 6 HOH A 89 689 1145 HOH HOH . M 6 HOH A 90 690 1125 HOH HOH . M 6 HOH A 91 691 1057 HOH HOH . M 6 HOH A 92 692 1071 HOH HOH . M 6 HOH A 93 693 1007 HOH HOH . M 6 HOH A 94 694 1005 HOH HOH . M 6 HOH A 95 695 1006 HOH HOH . M 6 HOH A 96 696 1148 HOH HOH . M 6 HOH A 97 697 1106 HOH HOH . M 6 HOH A 98 698 1074 HOH HOH . M 6 HOH A 99 699 1083 HOH HOH . M 6 HOH A 100 700 1037 HOH HOH . M 6 HOH A 101 701 37 HOH HOH . M 6 HOH A 102 702 1010 HOH HOH . M 6 HOH A 103 703 1077 HOH HOH . M 6 HOH A 104 704 1026 HOH HOH . M 6 HOH A 105 705 1041 HOH HOH . M 6 HOH A 106 706 19 HOH HOH . M 6 HOH A 107 707 1030 HOH HOH . M 6 HOH A 108 708 1 HOH HOH . M 6 HOH A 109 709 1067 HOH HOH . M 6 HOH A 110 710 1080 HOH HOH . M 6 HOH A 111 711 15 HOH HOH . M 6 HOH A 112 712 1015 HOH HOH . M 6 HOH A 113 713 1013 HOH HOH . M 6 HOH A 114 714 1017 HOH HOH . M 6 HOH A 115 715 7 HOH HOH . M 6 HOH A 116 716 28 HOH HOH . M 6 HOH A 117 717 1097 HOH HOH . M 6 HOH A 118 718 22 HOH HOH . M 6 HOH A 119 719 1081 HOH HOH . M 6 HOH A 120 720 1120 HOH HOH . M 6 HOH A 121 721 1042 HOH HOH . M 6 HOH A 122 722 1014 HOH HOH . M 6 HOH A 123 723 1039 HOH HOH . M 6 HOH A 124 724 9 HOH HOH . M 6 HOH A 125 725 1022 HOH HOH . M 6 HOH A 126 726 1191 HOH HOH . M 6 HOH A 127 727 1035 HOH HOH . M 6 HOH A 128 728 1079 HOH HOH . M 6 HOH A 129 729 1049 HOH HOH . M 6 HOH A 130 730 1115 HOH HOH . M 6 HOH A 131 731 1113 HOH HOH . M 6 HOH A 132 732 8 HOH HOH . M 6 HOH A 133 733 1132 HOH HOH . M 6 HOH A 134 734 1066 HOH HOH . M 6 HOH A 135 735 1193 HOH HOH . M 6 HOH A 136 736 1180 HOH HOH . M 6 HOH A 137 737 2 HOH HOH . M 6 HOH A 138 738 1162 HOH HOH . M 6 HOH A 139 739 1129 HOH HOH . M 6 HOH A 140 740 1174 HOH HOH . M 6 HOH A 141 741 1153 HOH HOH . M 6 HOH A 142 742 25 HOH HOH . M 6 HOH A 143 743 21 HOH HOH . M 6 HOH A 144 744 1112 HOH HOH . M 6 HOH A 145 745 1152 HOH HOH . M 6 HOH A 146 746 1141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 M9K . . . D 4 -0.814 -7.45 7.343 1 63.54 ? C10 M9K 503 A 1 HETATM 2 C C02 M9K . . . D 4 7.732 -3.243 5.51 1 51.08 ? C02 M9K 503 A 1 HETATM 3 C C03 M9K . . . D 4 6.803 -4.423 5.799 1 53.38 ? C03 M9K 503 A 1 HETATM 4 C C05 M9K . . . D 4 4.09 -5.231 6.043 1 59.03 ? C05 M9K 503 A 1 HETATM 5 C C06 M9K . . . D 4 2.764 -5.185 5.701 1 60.88 ? C06 M9K 503 A 1 HETATM 6 C C07 M9K . . . D 4 2.005 -6.295 6.049 1 61.89 ? C07 M9K 503 A 1 HETATM 7 C C08 M9K . . . D 4 0.647 -6.138 5.636 1 63.07 ? C08 M9K 503 A 1 HETATM 8 C C09 M9K . . . D 4 -0.377 -7.221 5.908 1 63.37 ? C09 M9K 503 A 1 HETATM 9 C C11 M9K . . . D 4 -0.311 -8.627 6.501 1 63.51 ? C11 M9K 503 A 1 HETATM 10 C C12 M9K . . . D 4 0.344 -4.952 4.995 1 63.48 ? C12 M9K 503 A 1 HETATM 11 C C16 M9K . . . D 4 3.834 -7.332 6.984 1 60.96 ? C16 M9K 503 A 1 HETATM 12 N N15 M9K . . . D 4 2.555 -7.335 6.686 1 61.48 ? N15 M9K 503 A 1 HETATM 13 N N17 M9K . . . D 4 4.6 -6.29 6.667 1 59.97 ? N17 M9K 503 A 1 HETATM 14 O O01 M9K . . . D 4 8.995 -3.374 5.56 1 51.67 -1 O01 M9K 503 A 1 HETATM 15 O O18 M9K . . . D 4 7.183 -2.153 5.198 1 47.33 ? O18 M9K 503 A 1 HETATM 16 S S04 M9K . . . D 4 5.096 -3.81 5.582 1 55.82 ? S04 M9K 503 A 1 HETATM 17 S S14 M9K . . . D 4 1.774 -4.046 4.909 1 62.33 ? S14 M9K 503 A 1 HETATM 18 CL CL M9K . . . D 4 -1.27 -4.564 4.405 1 64.62 ? CL M9K 503 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 18 #