data_6T2O # _model_server_result.job_id kQL5-ZsZfJuVQ4DdBmLEhw _model_server_result.datetime_utc '2024-12-26 09:50:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6T2O # _exptl.entry_id 6T2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T2O _cell.length_a 82.646 _cell.length_b 82.646 _cell.length_c 121.489 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 AAA CYS 45 1_555 B SG CYS 47 BBB CYS 45 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? disulf ? disulf2 A SG CYS 109 AAA CYS 107 1_555 A SG CYS 230 AAA CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf3 B SG CYS 109 BBB CYS 107 1_555 B SG CYS 230 BBB CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A O ASP 42 AAA ASP 40 1_555 E CA CA . AAA CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A O GLY 83 AAA GLY 81 1_555 E CA CA . AAA CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 A O ASP 268 AAA ASP 266 1_555 E CA CA . AAA CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc4 A OD1 ASP 268 AAA ASP 266 1_555 E CA CA . AAA CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc5 E CA CA . AAA CA 303 1_555 I O HOH . AAA HOH 410 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc6 E CA CA . AAA CA 303 1_555 I O HOH . AAA HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc7 B O ASP 42 BBB ASP 40 1_555 H CA CA . BBB CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 B O GLY 83 BBB GLY 81 1_555 H CA CA . BBB CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc9 B O ASP 268 BBB ASP 266 1_555 H CA CA . BBB CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc10 B OD1 ASP 268 BBB ASP 266 1_555 H CA CA . BBB CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc11 H CA CA . BBB CA 303 1_555 J O HOH . BBB HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc12 H CA CA . BBB CA 303 1_555 J O HOH . BBB HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6T2O _atom_sites.fract_transf_matrix[1][1] 0.0121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO AAA 1 301 301 EDO EDO . D 2 EDO AAA 1 302 401 EDO EDO . E 3 CA AAA 1 303 1 CA CA . F 2 EDO BBB 1 301 301 EDO EDO . G 2 EDO BBB 1 302 401 EDO EDO . H 3 CA BBB 1 303 2 CA CA . I 4 HOH AAA 1 401 89 HOH HOH . I 4 HOH AAA 2 402 118 HOH HOH . I 4 HOH AAA 3 403 22 HOH HOH . I 4 HOH AAA 4 404 60 HOH HOH . I 4 HOH AAA 5 405 24 HOH HOH . I 4 HOH AAA 6 406 35 HOH HOH . I 4 HOH AAA 7 407 71 HOH HOH . I 4 HOH AAA 8 408 95 HOH HOH . I 4 HOH AAA 9 409 74 HOH HOH . I 4 HOH AAA 10 410 67 HOH HOH . I 4 HOH AAA 11 411 124 HOH HOH . I 4 HOH AAA 12 412 97 HOH HOH . I 4 HOH AAA 13 413 111 HOH HOH . I 4 HOH AAA 14 414 82 HOH HOH . I 4 HOH AAA 15 415 23 HOH HOH . I 4 HOH AAA 16 416 110 HOH HOH . I 4 HOH AAA 17 417 43 HOH HOH . I 4 HOH AAA 18 418 9 HOH HOH . I 4 HOH AAA 19 419 86 HOH HOH . I 4 HOH AAA 20 420 107 HOH HOH . I 4 HOH AAA 21 421 38 HOH HOH . I 4 HOH AAA 22 422 127 HOH HOH . I 4 HOH AAA 23 423 53 HOH HOH . I 4 HOH AAA 24 424 133 HOH HOH . I 4 HOH AAA 25 425 100 HOH HOH . I 4 HOH AAA 26 426 115 HOH HOH . I 4 HOH AAA 27 427 132 HOH HOH . I 4 HOH AAA 28 428 51 HOH HOH . I 4 HOH AAA 29 429 32 HOH HOH . I 4 HOH AAA 30 430 84 HOH HOH . I 4 HOH AAA 31 431 20 HOH HOH . I 4 HOH AAA 32 432 62 HOH HOH . I 4 HOH AAA 33 433 4 HOH HOH . I 4 HOH AAA 34 434 47 HOH HOH . I 4 HOH AAA 35 435 13 HOH HOH . I 4 HOH AAA 36 436 33 HOH HOH . I 4 HOH AAA 37 437 49 HOH HOH . I 4 HOH AAA 38 438 19 HOH HOH . I 4 HOH AAA 39 439 101 HOH HOH . I 4 HOH AAA 40 440 17 HOH HOH . I 4 HOH AAA 41 441 30 HOH HOH . I 4 HOH AAA 42 442 12 HOH HOH . I 4 HOH AAA 43 443 91 HOH HOH . I 4 HOH AAA 44 444 123 HOH HOH . I 4 HOH AAA 45 445 56 HOH HOH . I 4 HOH AAA 46 446 68 HOH HOH . I 4 HOH AAA 47 447 88 HOH HOH . I 4 HOH AAA 48 448 7 HOH HOH . I 4 HOH AAA 49 449 39 HOH HOH . I 4 HOH AAA 50 450 61 HOH HOH . I 4 HOH AAA 51 451 25 HOH HOH . I 4 HOH AAA 52 452 78 HOH HOH . I 4 HOH AAA 53 453 36 HOH HOH . I 4 HOH AAA 54 454 27 HOH HOH . I 4 HOH AAA 55 455 28 HOH HOH . I 4 HOH AAA 56 456 85 HOH HOH . I 4 HOH AAA 57 457 104 HOH HOH . I 4 HOH AAA 58 458 21 HOH HOH . I 4 HOH AAA 59 459 129 HOH HOH . I 4 HOH AAA 60 460 52 HOH HOH . I 4 HOH AAA 61 461 134 HOH HOH . I 4 HOH AAA 62 462 80 HOH HOH . I 4 HOH AAA 63 463 5 HOH HOH . I 4 HOH AAA 64 464 46 HOH HOH . I 4 HOH AAA 65 465 6 HOH HOH . I 4 HOH AAA 66 466 128 HOH HOH . I 4 HOH AAA 67 467 105 HOH HOH . I 4 HOH AAA 68 468 57 HOH HOH . I 4 HOH AAA 69 469 1 HOH HOH . I 4 HOH AAA 70 470 2 HOH HOH . J 4 HOH BBB 1 401 98 HOH HOH . J 4 HOH BBB 2 402 26 HOH HOH . J 4 HOH BBB 3 403 16 HOH HOH . J 4 HOH BBB 4 404 130 HOH HOH . J 4 HOH BBB 5 405 59 HOH HOH . J 4 HOH BBB 6 406 10 HOH HOH . J 4 HOH BBB 7 407 72 HOH HOH . J 4 HOH BBB 8 408 69 HOH HOH . J 4 HOH BBB 9 409 18 HOH HOH . J 4 HOH BBB 10 410 90 HOH HOH . J 4 HOH BBB 11 411 122 HOH HOH . J 4 HOH BBB 12 412 116 HOH HOH . J 4 HOH BBB 13 413 65 HOH HOH . J 4 HOH BBB 14 414 83 HOH HOH . J 4 HOH BBB 15 415 42 HOH HOH . J 4 HOH BBB 16 416 87 HOH HOH . J 4 HOH BBB 17 417 40 HOH HOH . J 4 HOH BBB 18 418 73 HOH HOH . J 4 HOH BBB 19 419 109 HOH HOH . J 4 HOH BBB 20 420 77 HOH HOH . J 4 HOH BBB 21 421 75 HOH HOH . J 4 HOH BBB 22 422 92 HOH HOH . J 4 HOH BBB 23 423 113 HOH HOH . J 4 HOH BBB 24 424 121 HOH HOH . J 4 HOH BBB 25 425 8 HOH HOH . J 4 HOH BBB 26 426 112 HOH HOH . J 4 HOH BBB 27 427 135 HOH HOH . J 4 HOH BBB 28 428 44 HOH HOH . J 4 HOH BBB 29 429 120 HOH HOH . J 4 HOH BBB 30 430 99 HOH HOH . J 4 HOH BBB 31 431 55 HOH HOH . J 4 HOH BBB 32 432 48 HOH HOH . J 4 HOH BBB 33 433 125 HOH HOH . J 4 HOH BBB 34 434 94 HOH HOH . J 4 HOH BBB 35 435 102 HOH HOH . J 4 HOH BBB 36 436 50 HOH HOH . J 4 HOH BBB 37 437 37 HOH HOH . J 4 HOH BBB 38 438 54 HOH HOH . J 4 HOH BBB 39 439 11 HOH HOH . J 4 HOH BBB 40 440 66 HOH HOH . J 4 HOH BBB 41 441 31 HOH HOH . J 4 HOH BBB 42 442 76 HOH HOH . J 4 HOH BBB 43 443 103 HOH HOH . J 4 HOH BBB 44 444 96 HOH HOH . J 4 HOH BBB 45 445 63 HOH HOH . J 4 HOH BBB 46 446 15 HOH HOH . J 4 HOH BBB 47 447 29 HOH HOH . J 4 HOH BBB 48 448 81 HOH HOH . J 4 HOH BBB 49 449 119 HOH HOH . J 4 HOH BBB 50 450 14 HOH HOH . J 4 HOH BBB 51 451 93 HOH HOH . J 4 HOH BBB 52 452 45 HOH HOH . J 4 HOH BBB 53 453 58 HOH HOH . J 4 HOH BBB 54 454 114 HOH HOH . J 4 HOH BBB 55 455 41 HOH HOH . J 4 HOH BBB 56 456 64 HOH HOH . J 4 HOH BBB 57 457 131 HOH HOH . J 4 HOH BBB 58 458 3 HOH HOH . J 4 HOH BBB 59 459 34 HOH HOH . J 4 HOH BBB 60 460 106 HOH HOH . J 4 HOH BBB 61 461 70 HOH HOH . J 4 HOH BBB 62 462 136 HOH HOH . J 4 HOH BBB 63 463 117 HOH HOH . J 4 HOH BBB 64 464 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -32.289 -24.66 9.05 1 52.28 ? C1 EDO 302 AAA 1 HETATM 2 O O1 EDO . . . D 2 -31.322 -23.637 9.258 1 50.09 ? O1 EDO 302 AAA 1 HETATM 3 C C2 EDO . . . D 2 -33.615 -24.355 9.628 1 53.74 ? C2 EDO 302 AAA 1 HETATM 4 O O2 EDO . . . D 2 -33.652 -23.097 10.27 1 52.86 ? O2 EDO 302 AAA 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #