data_6T2Q # _model_server_result.job_id lBxBbdYy-7lIM6rFMiFVTg _model_server_result.datetime_utc '2024-10-19 12:34:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":309}' # _entry.id 6T2Q # _exptl.entry_id 6T2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T2Q _cell.length_a 82.918 _cell.length_b 82.918 _cell.length_c 121.31 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,O 1 1 B,D,I,J,K,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG GAL C1 O1 . O3 HO3 . sing 2 ? 2 3 2 GAL NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GAL 1 A 1 GAL AaA 322 GAL 2 n C NAG 2 A 2 NAG AbA 323 NAG 2 n C GAL 3 A 3 GAL AcA 324 GAL 2 n D GAL 1 B 1 GAL BaB 322 GAL 2 n D NAG 2 B 2 NAG BcB 323 NAG 2 n D GAL 3 B 3 GAL BbB 324 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 AAA CYS 45 1_555 B SG CYS 47 BBB CYS 45 4_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf2 A SG CYS 109 AAA CYS 107 1_555 A SG CYS 230 AAA CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf3 B SG CYS 109 BBB CYS 107 1_555 B SG CYS 230 BBB CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? covale ? covale1 C O3 GAL . A GAL 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 sing covale ? covale2 C O4 NAG . A NAG 2 1_555 C C1 GAL . A GAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 sing covale ? covale3 D O3 GAL . B GAL 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing covale ? covale4 D O4 NAG . B NAG 2 1_555 D C1 GAL . B GAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 sing metalc ? metalc1 A O ASP 42 AAA ASP 40 1_555 F CA CA . AAA CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A O PRO 50 AAA PRO 48 1_555 H NA NA . AAA NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc3 A O TRP 55 AAA TRP 53 1_555 H NA NA . AAA NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc4 A OH TYR 75 AAA TYR 73 1_555 H NA NA . AAA NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc5 A O GLY 83 AAA GLY 81 1_555 F CA CA . AAA CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 A OE1 GLU 150 AAA GLU 148 1_555 G NA NA . AAA NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc7 A O PHE 160 AAA PHE 158 1_555 G NA NA . AAA NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc8 A OG1 THR 162 AAA THR 160 1_555 G NA NA . AAA NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc9 A O ASP 268 AAA ASP 266 1_555 F CA CA . AAA CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc10 A OD1 ASP 268 AAA ASP 266 1_555 F CA CA . AAA CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc11 B O ASP 42 BBB ASP 40 1_555 J CA CA . BBB CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc12 B O PRO 50 BBB PRO 48 1_555 N NA NA . BBB NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc13 B O TRP 55 BBB TRP 53 1_555 N NA NA . BBB NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc14 B OH TYR 75 BBB TYR 73 1_555 N NA NA . BBB NA 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc15 B O GLY 83 BBB GLY 81 1_555 J CA CA . BBB CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc16 B OE2 GLU 150 BBB GLU 148 1_555 L NA NA . BBB NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc17 B O VAL 152 BBB VAL 150 1_555 M NA NA . BBB NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc18 B O SER 155 BBB SER 153 1_555 M NA NA . BBB NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc19 B O GLN 158 BBB GLN 156 1_555 M NA NA . BBB NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.718 ? metalc ? metalc20 B O PHE 160 BBB PHE 158 1_555 L NA NA . BBB NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc21 B OG1 THR 162 BBB THR 160 1_555 L NA NA . BBB NA 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc22 B OG1 THR 165 BBB THR 163 1_555 K NA NA . BBB NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc23 B OH TYR 215 BBB TYR 213 1_555 K NA NA . BBB NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc24 B O GLN 226 BBB GLN 224 1_555 K NA NA . BBB NA 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc25 B O ASP 268 BBB ASP 266 1_555 J CA CA . BBB CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc26 B OD1 ASP 268 BBB ASP 266 1_555 J CA CA . BBB CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc27 J CA CA . BBB CA 305 1_555 P O HOH . BBB HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc28 J CA CA . BBB CA 305 1_555 P O HOH . BBB HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6T2Q _atom_sites.fract_transf_matrix[1][1] 0.01206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO AAA 1 304 2 EDO EDO . F 4 CA AAA 1 305 2 CA CA . G 5 NA AAA 1 306 3 NA NA . H 5 NA AAA 1 307 6 NA NA . I 3 EDO BBB 1 304 1 EDO EDO . J 4 CA BBB 1 305 1 CA CA . K 5 NA BBB 1 306 1 NA NA . L 5 NA BBB 1 307 4 NA NA . M 5 NA BBB 1 308 5 NA NA . N 5 NA BBB 1 309 7 NA NA . O 6 HOH AAA 1 401 49 HOH HOH . O 6 HOH AAA 2 402 68 HOH HOH . O 6 HOH AAA 3 403 18 HOH HOH . O 6 HOH AAA 4 404 94 HOH HOH . O 6 HOH AAA 5 405 89 HOH HOH . O 6 HOH AAA 6 406 40 HOH HOH . O 6 HOH AAA 7 407 36 HOH HOH . O 6 HOH AAA 8 408 79 HOH HOH . O 6 HOH AAA 9 409 69 HOH HOH . O 6 HOH AAA 10 410 24 HOH HOH . O 6 HOH AAA 11 411 66 HOH HOH . O 6 HOH AAA 12 412 63 HOH HOH . O 6 HOH AAA 13 413 65 HOH HOH . O 6 HOH AAA 14 414 9 HOH HOH . O 6 HOH AAA 15 415 88 HOH HOH . O 6 HOH AAA 16 416 30 HOH HOH . O 6 HOH AAA 17 417 14 HOH HOH . O 6 HOH AAA 18 418 15 HOH HOH . O 6 HOH AAA 19 419 42 HOH HOH . O 6 HOH AAA 20 420 28 HOH HOH . O 6 HOH AAA 21 421 75 HOH HOH . O 6 HOH AAA 22 422 59 HOH HOH . O 6 HOH AAA 23 423 32 HOH HOH . O 6 HOH AAA 24 424 10 HOH HOH . O 6 HOH AAA 25 425 55 HOH HOH . O 6 HOH AAA 26 426 44 HOH HOH . O 6 HOH AAA 27 427 22 HOH HOH . O 6 HOH AAA 28 428 78 HOH HOH . O 6 HOH AAA 29 429 90 HOH HOH . O 6 HOH AAA 30 430 34 HOH HOH . O 6 HOH AAA 31 431 37 HOH HOH . O 6 HOH AAA 32 432 98 HOH HOH . O 6 HOH AAA 33 433 8 HOH HOH . O 6 HOH AAA 34 434 33 HOH HOH . O 6 HOH AAA 35 435 43 HOH HOH . O 6 HOH AAA 36 436 48 HOH HOH . O 6 HOH AAA 37 437 73 HOH HOH . O 6 HOH AAA 38 438 19 HOH HOH . O 6 HOH AAA 39 439 96 HOH HOH . O 6 HOH AAA 40 440 100 HOH HOH . O 6 HOH AAA 41 441 87 HOH HOH . P 6 HOH BBB 1 401 61 HOH HOH . P 6 HOH BBB 2 402 60 HOH HOH . P 6 HOH BBB 3 403 84 HOH HOH . P 6 HOH BBB 4 404 54 HOH HOH . P 6 HOH BBB 5 405 41 HOH HOH . P 6 HOH BBB 6 406 12 HOH HOH . P 6 HOH BBB 7 407 26 HOH HOH . P 6 HOH BBB 8 408 62 HOH HOH . P 6 HOH BBB 9 409 83 HOH HOH . P 6 HOH BBB 10 410 4 HOH HOH . P 6 HOH BBB 11 411 80 HOH HOH . P 6 HOH BBB 12 412 47 HOH HOH . P 6 HOH BBB 13 413 25 HOH HOH . P 6 HOH BBB 14 414 29 HOH HOH . P 6 HOH BBB 15 415 38 HOH HOH . P 6 HOH BBB 16 416 64 HOH HOH . P 6 HOH BBB 17 417 27 HOH HOH . P 6 HOH BBB 18 418 11 HOH HOH . P 6 HOH BBB 19 419 92 HOH HOH . P 6 HOH BBB 20 420 56 HOH HOH . P 6 HOH BBB 21 421 53 HOH HOH . P 6 HOH BBB 22 422 35 HOH HOH . P 6 HOH BBB 23 423 91 HOH HOH . P 6 HOH BBB 24 424 5 HOH HOH . P 6 HOH BBB 25 425 13 HOH HOH . P 6 HOH BBB 26 426 17 HOH HOH . P 6 HOH BBB 27 427 31 HOH HOH . P 6 HOH BBB 28 428 74 HOH HOH . P 6 HOH BBB 29 429 81 HOH HOH . P 6 HOH BBB 30 430 58 HOH HOH . P 6 HOH BBB 31 431 77 HOH HOH . P 6 HOH BBB 32 432 45 HOH HOH . P 6 HOH BBB 33 433 71 HOH HOH . P 6 HOH BBB 34 434 21 HOH HOH . P 6 HOH BBB 35 435 39 HOH HOH . P 6 HOH BBB 36 436 93 HOH HOH . P 6 HOH BBB 37 437 16 HOH HOH . P 6 HOH BBB 38 438 50 HOH HOH . P 6 HOH BBB 39 439 7 HOH HOH . P 6 HOH BBB 40 440 57 HOH HOH . P 6 HOH BBB 41 441 70 HOH HOH . P 6 HOH BBB 42 442 67 HOH HOH . P 6 HOH BBB 43 443 23 HOH HOH . P 6 HOH BBB 44 444 95 HOH HOH . P 6 HOH BBB 45 445 72 HOH HOH . P 6 HOH BBB 46 446 1 HOH HOH . P 6 HOH BBB 47 447 85 HOH HOH . P 6 HOH BBB 48 448 6 HOH HOH . P 6 HOH BBB 49 449 51 HOH HOH . P 6 HOH BBB 50 450 52 HOH HOH . P 6 HOH BBB 51 451 46 HOH HOH . P 6 HOH BBB 52 452 86 HOH HOH . P 6 HOH BBB 53 453 20 HOH HOH . P 6 HOH BBB 54 454 3 HOH HOH . P 6 HOH BBB 55 455 82 HOH HOH . P 6 HOH BBB 56 456 76 HOH HOH . P 6 HOH BBB 57 457 97 HOH HOH . P 6 HOH BBB 58 458 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 5 _atom_site.Cartn_x 4.848 _atom_site.Cartn_y 11.646 _atom_site.Cartn_z 11.566 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.53 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 309 _atom_site.auth_asym_id BBB _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #