data_6T30 # _model_server_result.job_id sbhVPPIsjx4lEv3n-F-0Ww _model_server_result.datetime_utc '2024-11-17 09:42:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6T30 # _exptl.entry_id 6T30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T30 _cell.length_a 55.132 _cell.length_b 55.132 _cell.length_c 131.209 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -43.736333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C20 H29 N5 O2 S' _chem_comp.formula_weight 403.542 _chem_comp.id HL9 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C25 HL9 doub 159 n y C28 N13 HL9 sing 160 n y C25 C24 HL9 sing 161 n y N13 C27 HL9 doub 162 n y C21 C20 HL9 sing 163 n n C21 N11 HL9 sing 164 n n C24 N11 HL9 sing 165 n n C24 C26 HL9 doub 166 n y C27 C26 HL9 sing 167 n y C20 C18 HL9 sing 168 n n N11 C22 HL9 sing 169 n n O07 C23 HL9 doub 170 n n C18 N09 HL9 sing 171 n n C18 C19 HL9 sing 172 n n C22 C19 HL9 sing 173 n n C23 N09 HL9 sing 174 n n C23 C17 HL9 sing 175 n n C17 C16 HL9 sing 176 n n C16 C15 HL9 sing 177 n n C15 C14 HL9 sing 178 n n C14 C01 HL9 sing 179 n n C01 C08 HL9 sing 180 n n C01 S04 HL9 sing 181 n n N06 C08 HL9 sing 182 n n N06 C05 HL9 sing 183 n n C08 C10 HL9 sing 184 n n S04 C12 HL9 sing 185 n n C05 O03 HL9 doub 186 n n C05 N02 HL9 sing 187 n n C10 C12 HL9 sing 188 n n C10 N02 HL9 sing 189 n n C01 H011 HL9 sing 190 n n C08 H081 HL9 sing 191 n n C10 H101 HL9 sing 192 n n C12 H122 HL9 sing 193 n n C12 H121 HL9 sing 194 n n C14 H142 HL9 sing 195 n n C14 H141 HL9 sing 196 n n C15 H151 HL9 sing 197 n n C15 H152 HL9 sing 198 n n C16 H162 HL9 sing 199 n n C16 H161 HL9 sing 200 n n C17 H171 HL9 sing 201 n n C17 H172 HL9 sing 202 n n C18 H181 HL9 sing 203 n n C19 H192 HL9 sing 204 n n C19 H191 HL9 sing 205 n n C20 H202 HL9 sing 206 n n C20 H201 HL9 sing 207 n n C21 H212 HL9 sing 208 n n C21 H211 HL9 sing 209 n n C22 H221 HL9 sing 210 n n C22 H222 HL9 sing 211 n n C25 H251 HL9 sing 212 n n C26 H261 HL9 sing 213 n n C27 H271 HL9 sing 214 n n C28 H281 HL9 sing 215 n n N02 H021 HL9 sing 216 n n N06 H061 HL9 sing 217 n n N09 H091 HL9 sing 218 n n # _atom_sites.entry_id 6T30 _atom_sites.fract_transf_matrix[1][1] 0.018138 _atom_sites.fract_transf_matrix[1][2] 0.010472 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HL9 B 1 201 201 HL9 HL9 . D 3 EDO B 1 202 301 EDO EDO . E 3 EDO B 1 203 201 EDO EDO . F 2 HL9 A 1 201 201 HL9 HL9 . G 3 EDO A 1 202 401 EDO EDO . H 4 GOL A 1 203 501 GOL GOL . I 5 HOH B 1 301 45 HOH HOH . I 5 HOH B 2 302 93 HOH HOH . I 5 HOH B 3 303 55 HOH HOH . I 5 HOH B 4 304 102 HOH HOH . I 5 HOH B 5 305 67 HOH HOH . I 5 HOH B 6 306 36 HOH HOH . I 5 HOH B 7 307 46 HOH HOH . I 5 HOH B 8 308 35 HOH HOH . I 5 HOH B 9 309 56 HOH HOH . I 5 HOH B 10 310 48 HOH HOH . I 5 HOH B 11 311 52 HOH HOH . I 5 HOH B 12 312 85 HOH HOH . I 5 HOH B 13 313 72 HOH HOH . I 5 HOH B 14 314 121 HOH HOH . I 5 HOH B 15 315 17 HOH HOH . I 5 HOH B 16 316 64 HOH HOH . I 5 HOH B 17 317 81 HOH HOH . I 5 HOH B 18 318 59 HOH HOH . I 5 HOH B 19 319 3 HOH HOH . I 5 HOH B 20 320 57 HOH HOH . I 5 HOH B 21 321 53 HOH HOH . I 5 HOH B 22 322 30 HOH HOH . I 5 HOH B 23 323 32 HOH HOH . I 5 HOH B 24 324 97 HOH HOH . I 5 HOH B 25 325 66 HOH HOH . I 5 HOH B 26 326 110 HOH HOH . I 5 HOH B 27 327 98 HOH HOH . I 5 HOH B 28 328 99 HOH HOH . I 5 HOH B 29 329 43 HOH HOH . I 5 HOH B 30 330 77 HOH HOH . I 5 HOH B 31 331 120 HOH HOH . I 5 HOH B 32 332 47 HOH HOH . I 5 HOH B 33 333 96 HOH HOH . I 5 HOH B 34 334 208 HOH HOH . I 5 HOH B 35 335 4 HOH HOH . I 5 HOH B 36 336 73 HOH HOH . I 5 HOH B 37 337 51 HOH HOH . I 5 HOH B 38 338 49 HOH HOH . I 5 HOH B 39 339 41 HOH HOH . I 5 HOH B 40 340 22 HOH HOH . I 5 HOH B 41 341 65 HOH HOH . I 5 HOH B 42 342 86 HOH HOH . I 5 HOH B 43 343 12 HOH HOH . I 5 HOH B 44 344 20 HOH HOH . I 5 HOH B 45 345 119 HOH HOH . I 5 HOH B 46 346 101 HOH HOH . I 5 HOH B 47 347 84 HOH HOH . I 5 HOH B 48 348 206 HOH HOH . I 5 HOH B 49 349 95 HOH HOH . I 5 HOH B 50 350 207 HOH HOH . I 5 HOH B 51 351 6 HOH HOH . I 5 HOH B 52 352 26 HOH HOH . I 5 HOH B 53 353 123 HOH HOH . I 5 HOH B 54 354 39 HOH HOH . I 5 HOH B 55 355 209 HOH HOH . I 5 HOH B 56 356 50 HOH HOH . I 5 HOH B 57 357 83 HOH HOH . I 5 HOH B 58 358 205 HOH HOH . J 5 HOH A 1 301 70 HOH HOH . J 5 HOH A 2 302 103 HOH HOH . J 5 HOH A 3 303 69 HOH HOH . J 5 HOH A 4 304 34 HOH HOH . J 5 HOH A 5 305 91 HOH HOH . J 5 HOH A 6 306 107 HOH HOH . J 5 HOH A 7 307 62 HOH HOH . J 5 HOH A 8 308 211 HOH HOH . J 5 HOH A 9 309 106 HOH HOH . J 5 HOH A 10 310 54 HOH HOH . J 5 HOH A 11 311 68 HOH HOH . J 5 HOH A 12 312 79 HOH HOH . J 5 HOH A 13 313 122 HOH HOH . J 5 HOH A 14 314 76 HOH HOH . J 5 HOH A 15 315 105 HOH HOH . J 5 HOH A 16 316 18 HOH HOH . J 5 HOH A 17 317 90 HOH HOH . J 5 HOH A 18 318 61 HOH HOH . J 5 HOH A 19 319 58 HOH HOH . J 5 HOH A 20 320 19 HOH HOH . J 5 HOH A 21 321 23 HOH HOH . J 5 HOH A 22 322 25 HOH HOH . J 5 HOH A 23 323 13 HOH HOH . J 5 HOH A 24 324 38 HOH HOH . J 5 HOH A 25 325 117 HOH HOH . J 5 HOH A 26 326 88 HOH HOH . J 5 HOH A 27 327 21 HOH HOH . J 5 HOH A 28 328 33 HOH HOH . J 5 HOH A 29 329 80 HOH HOH . J 5 HOH A 30 330 37 HOH HOH . J 5 HOH A 31 331 16 HOH HOH . J 5 HOH A 32 332 2 HOH HOH . J 5 HOH A 33 333 27 HOH HOH . J 5 HOH A 34 334 24 HOH HOH . J 5 HOH A 35 335 109 HOH HOH . J 5 HOH A 36 336 108 HOH HOH . J 5 HOH A 37 337 75 HOH HOH . J 5 HOH A 38 338 44 HOH HOH . J 5 HOH A 39 339 87 HOH HOH . J 5 HOH A 40 340 104 HOH HOH . J 5 HOH A 41 341 60 HOH HOH . J 5 HOH A 42 342 10 HOH HOH . J 5 HOH A 43 343 78 HOH HOH . J 5 HOH A 44 344 63 HOH HOH . J 5 HOH A 45 345 15 HOH HOH . J 5 HOH A 46 346 29 HOH HOH . J 5 HOH A 47 347 14 HOH HOH . J 5 HOH A 48 348 202 HOH HOH . J 5 HOH A 49 349 92 HOH HOH . J 5 HOH A 50 350 40 HOH HOH . J 5 HOH A 51 351 11 HOH HOH . J 5 HOH A 52 352 74 HOH HOH . J 5 HOH A 53 353 113 HOH HOH . J 5 HOH A 54 354 116 HOH HOH . J 5 HOH A 55 355 118 HOH HOH . J 5 HOH A 56 356 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HL9 . . . C 2 8.755 4.535 -14.697 1 34.55 ? C01 HL9 201 B 1 HETATM 2 C C05 HL9 . . . C 2 6.855 4.308 -11.745 1 40.52 ? C05 HL9 201 B 1 HETATM 3 C C08 HL9 . . . C 2 8.635 3.852 -13.256 1 36.65 ? C08 HL9 201 B 1 HETATM 4 C C10 HL9 . . . C 2 7.518 2.74 -13.417 1 37.22 ? C10 HL9 201 B 1 HETATM 5 C C12 HL9 . . . C 2 6.943 2.834 -14.84 1 34.07 ? C12 HL9 201 B 1 HETATM 6 C C14 HL9 . . . C 2 9.321 5.949 -14.736 1 35.41 ? C14 HL9 201 B 1 HETATM 7 C C15 HL9 . . . C 2 9.77 6.418 -16.162 1 37.3 ? C15 HL9 201 B 1 HETATM 8 C C16 HL9 . . . C 2 10.576 7.724 -16.029 1 39.21 ? C16 HL9 201 B 1 HETATM 9 C C17 HL9 . . . C 2 10.996 8.147 -17.463 1 40.25 ? C17 HL9 201 B 1 HETATM 10 C C18 HL9 . . . C 2 13.687 6.43 -19.542 1 46.04 ? C18 HL9 201 B 1 HETATM 11 C C19 HL9 . . . C 2 14.32 7.054 -20.794 1 50.52 ? C19 HL9 201 B 1 HETATM 12 C C20 HL9 . . . C 2 13.427 4.926 -19.658 1 47.91 ? C20 HL9 201 B 1 HETATM 13 C C21 HL9 . . . C 2 14.706 4.253 -20.149 1 50.65 ? C21 HL9 201 B 1 HETATM 14 C C22 HL9 . . . C 2 15.114 6.136 -21.75 1 51.87 ? C22 HL9 201 B 1 HETATM 15 C C23 HL9 . . . C 2 12.264 7.409 -17.887 1 42.35 ? C23 HL9 201 B 1 HETATM 16 C C24 HL9 . . . C 2 15.142 3.765 -22.544 1 56 ? C24 HL9 201 B 1 HETATM 17 C C25 HL9 . . . C 2 15.735 4.092 -23.775 1 56.62 ? C25 HL9 201 B 1 HETATM 18 C C26 HL9 . . . C 2 14.685 2.418 -22.403 1 56.49 ? C26 HL9 201 B 1 HETATM 19 C C27 HL9 . . . C 2 14.815 1.514 -23.44 1 55.6 ? C27 HL9 201 B 1 HETATM 20 C C28 HL9 . . . C 2 15.818 3.122 -24.769 1 58.35 ? C28 HL9 201 B 1 HETATM 21 N N02 HL9 . . . C 2 6.501 3.174 -12.455 1 39.38 ? N02 HL9 201 B 1 HETATM 22 N N06 HL9 . . . C 2 8.089 4.706 -12.207 1 40.17 ? N06 HL9 201 B 1 HETATM 23 N N09 HL9 . . . C 2 12.439 7.093 -19.196 1 41.66 ? N09 HL9 201 B 1 HETATM 24 N N11 HL9 . . . C 2 15.006 4.695 -21.513 1 52.7 ? N11 HL9 201 B 1 HETATM 25 N N13 HL9 . . . C 2 15.386 1.849 -24.632 1 58.52 ? N13 HL9 201 B 1 HETATM 26 O O03 HL9 . . . C 2 6.172 4.888 -10.87 1 38.96 ? O03 HL9 201 B 1 HETATM 27 O O07 HL9 . . . C 2 13.149 7.123 -17.086 1 41.86 ? O07 HL9 201 B 1 HETATM 28 S S04 HL9 . . . C 2 7.064 4.577 -15.344 1 36.03 ? S04 HL9 201 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 399 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #