data_6T30 # _model_server_result.job_id TUugztxdppBqiT1m-3C8Jw _model_server_result.datetime_utc '2024-11-17 09:48:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t30 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 6T30 # _exptl.entry_id 6T30 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T30 _cell.length_a 55.132 _cell.length_b 55.132 _cell.length_c 131.209 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T30 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -43.736333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C20 H29 N5 O2 S' _chem_comp.formula_weight 403.542 _chem_comp.id HL9 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C25 HL9 doub 159 n y C28 N13 HL9 sing 160 n y C25 C24 HL9 sing 161 n y N13 C27 HL9 doub 162 n y C21 C20 HL9 sing 163 n n C21 N11 HL9 sing 164 n n C24 N11 HL9 sing 165 n n C24 C26 HL9 doub 166 n y C27 C26 HL9 sing 167 n y C20 C18 HL9 sing 168 n n N11 C22 HL9 sing 169 n n O07 C23 HL9 doub 170 n n C18 N09 HL9 sing 171 n n C18 C19 HL9 sing 172 n n C22 C19 HL9 sing 173 n n C23 N09 HL9 sing 174 n n C23 C17 HL9 sing 175 n n C17 C16 HL9 sing 176 n n C16 C15 HL9 sing 177 n n C15 C14 HL9 sing 178 n n C14 C01 HL9 sing 179 n n C01 C08 HL9 sing 180 n n C01 S04 HL9 sing 181 n n N06 C08 HL9 sing 182 n n N06 C05 HL9 sing 183 n n C08 C10 HL9 sing 184 n n S04 C12 HL9 sing 185 n n C05 O03 HL9 doub 186 n n C05 N02 HL9 sing 187 n n C10 C12 HL9 sing 188 n n C10 N02 HL9 sing 189 n n C01 H011 HL9 sing 190 n n C08 H081 HL9 sing 191 n n C10 H101 HL9 sing 192 n n C12 H122 HL9 sing 193 n n C12 H121 HL9 sing 194 n n C14 H142 HL9 sing 195 n n C14 H141 HL9 sing 196 n n C15 H151 HL9 sing 197 n n C15 H152 HL9 sing 198 n n C16 H162 HL9 sing 199 n n C16 H161 HL9 sing 200 n n C17 H171 HL9 sing 201 n n C17 H172 HL9 sing 202 n n C18 H181 HL9 sing 203 n n C19 H192 HL9 sing 204 n n C19 H191 HL9 sing 205 n n C20 H202 HL9 sing 206 n n C20 H201 HL9 sing 207 n n C21 H212 HL9 sing 208 n n C21 H211 HL9 sing 209 n n C22 H221 HL9 sing 210 n n C22 H222 HL9 sing 211 n n C25 H251 HL9 sing 212 n n C26 H261 HL9 sing 213 n n C27 H271 HL9 sing 214 n n C28 H281 HL9 sing 215 n n N02 H021 HL9 sing 216 n n N06 H061 HL9 sing 217 n n N09 H091 HL9 sing 218 n n # _atom_sites.entry_id 6T30 _atom_sites.fract_transf_matrix[1][1] 0.018138 _atom_sites.fract_transf_matrix[1][2] 0.010472 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HL9 B 1 201 201 HL9 HL9 . D 3 EDO B 1 202 301 EDO EDO . E 3 EDO B 1 203 201 EDO EDO . F 2 HL9 A 1 201 201 HL9 HL9 . G 3 EDO A 1 202 401 EDO EDO . H 4 GOL A 1 203 501 GOL GOL . I 5 HOH B 1 301 45 HOH HOH . I 5 HOH B 2 302 93 HOH HOH . I 5 HOH B 3 303 55 HOH HOH . I 5 HOH B 4 304 102 HOH HOH . I 5 HOH B 5 305 67 HOH HOH . I 5 HOH B 6 306 36 HOH HOH . I 5 HOH B 7 307 46 HOH HOH . I 5 HOH B 8 308 35 HOH HOH . I 5 HOH B 9 309 56 HOH HOH . I 5 HOH B 10 310 48 HOH HOH . I 5 HOH B 11 311 52 HOH HOH . I 5 HOH B 12 312 85 HOH HOH . I 5 HOH B 13 313 72 HOH HOH . I 5 HOH B 14 314 121 HOH HOH . I 5 HOH B 15 315 17 HOH HOH . I 5 HOH B 16 316 64 HOH HOH . I 5 HOH B 17 317 81 HOH HOH . I 5 HOH B 18 318 59 HOH HOH . I 5 HOH B 19 319 3 HOH HOH . I 5 HOH B 20 320 57 HOH HOH . I 5 HOH B 21 321 53 HOH HOH . I 5 HOH B 22 322 30 HOH HOH . I 5 HOH B 23 323 32 HOH HOH . I 5 HOH B 24 324 97 HOH HOH . I 5 HOH B 25 325 66 HOH HOH . I 5 HOH B 26 326 110 HOH HOH . I 5 HOH B 27 327 98 HOH HOH . I 5 HOH B 28 328 99 HOH HOH . I 5 HOH B 29 329 43 HOH HOH . I 5 HOH B 30 330 77 HOH HOH . I 5 HOH B 31 331 120 HOH HOH . I 5 HOH B 32 332 47 HOH HOH . I 5 HOH B 33 333 96 HOH HOH . I 5 HOH B 34 334 208 HOH HOH . I 5 HOH B 35 335 4 HOH HOH . I 5 HOH B 36 336 73 HOH HOH . I 5 HOH B 37 337 51 HOH HOH . I 5 HOH B 38 338 49 HOH HOH . I 5 HOH B 39 339 41 HOH HOH . I 5 HOH B 40 340 22 HOH HOH . I 5 HOH B 41 341 65 HOH HOH . I 5 HOH B 42 342 86 HOH HOH . I 5 HOH B 43 343 12 HOH HOH . I 5 HOH B 44 344 20 HOH HOH . I 5 HOH B 45 345 119 HOH HOH . I 5 HOH B 46 346 101 HOH HOH . I 5 HOH B 47 347 84 HOH HOH . I 5 HOH B 48 348 206 HOH HOH . I 5 HOH B 49 349 95 HOH HOH . I 5 HOH B 50 350 207 HOH HOH . I 5 HOH B 51 351 6 HOH HOH . I 5 HOH B 52 352 26 HOH HOH . I 5 HOH B 53 353 123 HOH HOH . I 5 HOH B 54 354 39 HOH HOH . I 5 HOH B 55 355 209 HOH HOH . I 5 HOH B 56 356 50 HOH HOH . I 5 HOH B 57 357 83 HOH HOH . I 5 HOH B 58 358 205 HOH HOH . J 5 HOH A 1 301 70 HOH HOH . J 5 HOH A 2 302 103 HOH HOH . J 5 HOH A 3 303 69 HOH HOH . J 5 HOH A 4 304 34 HOH HOH . J 5 HOH A 5 305 91 HOH HOH . J 5 HOH A 6 306 107 HOH HOH . J 5 HOH A 7 307 62 HOH HOH . J 5 HOH A 8 308 211 HOH HOH . J 5 HOH A 9 309 106 HOH HOH . J 5 HOH A 10 310 54 HOH HOH . J 5 HOH A 11 311 68 HOH HOH . J 5 HOH A 12 312 79 HOH HOH . J 5 HOH A 13 313 122 HOH HOH . J 5 HOH A 14 314 76 HOH HOH . J 5 HOH A 15 315 105 HOH HOH . J 5 HOH A 16 316 18 HOH HOH . J 5 HOH A 17 317 90 HOH HOH . J 5 HOH A 18 318 61 HOH HOH . J 5 HOH A 19 319 58 HOH HOH . J 5 HOH A 20 320 19 HOH HOH . J 5 HOH A 21 321 23 HOH HOH . J 5 HOH A 22 322 25 HOH HOH . J 5 HOH A 23 323 13 HOH HOH . J 5 HOH A 24 324 38 HOH HOH . J 5 HOH A 25 325 117 HOH HOH . J 5 HOH A 26 326 88 HOH HOH . J 5 HOH A 27 327 21 HOH HOH . J 5 HOH A 28 328 33 HOH HOH . J 5 HOH A 29 329 80 HOH HOH . J 5 HOH A 30 330 37 HOH HOH . J 5 HOH A 31 331 16 HOH HOH . J 5 HOH A 32 332 2 HOH HOH . J 5 HOH A 33 333 27 HOH HOH . J 5 HOH A 34 334 24 HOH HOH . J 5 HOH A 35 335 109 HOH HOH . J 5 HOH A 36 336 108 HOH HOH . J 5 HOH A 37 337 75 HOH HOH . J 5 HOH A 38 338 44 HOH HOH . J 5 HOH A 39 339 87 HOH HOH . J 5 HOH A 40 340 104 HOH HOH . J 5 HOH A 41 341 60 HOH HOH . J 5 HOH A 42 342 10 HOH HOH . J 5 HOH A 43 343 78 HOH HOH . J 5 HOH A 44 344 63 HOH HOH . J 5 HOH A 45 345 15 HOH HOH . J 5 HOH A 46 346 29 HOH HOH . J 5 HOH A 47 347 14 HOH HOH . J 5 HOH A 48 348 202 HOH HOH . J 5 HOH A 49 349 92 HOH HOH . J 5 HOH A 50 350 40 HOH HOH . J 5 HOH A 51 351 11 HOH HOH . J 5 HOH A 52 352 74 HOH HOH . J 5 HOH A 53 353 113 HOH HOH . J 5 HOH A 54 354 116 HOH HOH . J 5 HOH A 55 355 118 HOH HOH . J 5 HOH A 56 356 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HL9 . . . F 2 -0.767 -19.897 -15.686 1 39.56 ? C01 HL9 201 A 1 HETATM 2 C C05 HL9 . . . F 2 0.907 -19.839 -12.608 1 37.97 ? C05 HL9 201 A 1 HETATM 3 C C08 HL9 . . . F 2 -0.726 -19.333 -14.214 1 37.69 ? C08 HL9 201 A 1 HETATM 4 C C10 HL9 . . . F 2 0.332 -18.173 -14.168 1 37.68 ? C10 HL9 201 A 1 HETATM 5 C C12 HL9 . . . F 2 1.077 -18.155 -15.538 1 39.22 ? C12 HL9 201 A 1 HETATM 6 C C14 HL9 . . . F 2 -1.432 -21.297 -15.806 1 39.45 ? C14 HL9 201 A 1 HETATM 7 C C15 HL9 . . . F 2 -1.526 -21.766 -17.28 1 40.75 ? C15 HL9 201 A 1 HETATM 8 C C16 HL9 . . . F 2 -2.367 -23.032 -17.386 1 43.12 ? C16 HL9 201 A 1 HETATM 9 C C17 HL9 . . . F 2 -2.674 -23.437 -18.837 1 44.57 ? C17 HL9 201 A 1 HETATM 10 C C18 HL9 . . . F 2 -5.04 -21.426 -21.079 1 50.78 ? C18 HL9 201 A 1 HETATM 11 C C19 HL9 . . . F 2 -5.679 -22.174 -22.239 1 56.33 ? C19 HL9 201 A 1 HETATM 12 C C20 HL9 . . . F 2 -4.622 -20.035 -21.544 1 51.62 ? C20 HL9 201 A 1 HETATM 13 C C21 HL9 . . . F 2 -5.805 -19.235 -22.09 1 54.21 ? C21 HL9 201 A 1 HETATM 14 C C22 HL9 . . . F 2 -6.829 -21.365 -22.861 1 57.61 ? C22 HL9 201 A 1 HETATM 15 C C23 HL9 . . . F 2 -3.866 -22.632 -19.291 1 47.37 ? C23 HL9 201 A 1 HETATM 16 C C24 HL9 . . . F 2 -6.894 -19.399 -24.315 1 64.97 ? C24 HL9 201 A 1 HETATM 17 C C25 HL9 . . . F 2 -8.007 -19.875 -25.042 1 70.05 ? C25 HL9 201 A 1 HETATM 18 C C26 HL9 . . . F 2 -6.193 -18.336 -24.879 1 66.25 ? C26 HL9 201 A 1 HETATM 19 C C27 HL9 . . . F 2 -6.598 -17.797 -26.081 1 67.13 ? C27 HL9 201 A 1 HETATM 20 C C28 HL9 . . . F 2 -8.335 -19.273 -26.244 1 71.1 ? C28 HL9 201 A 1 HETATM 21 N N02 HL9 . . . F 2 1.239 -18.613 -13.142 1 37.46 ? N02 HL9 201 A 1 HETATM 22 N N06 HL9 . . . F 2 -0.234 -20.271 -13.204 1 39.85 ? N06 HL9 201 A 1 HETATM 23 N N09 HL9 . . . F 2 -3.891 -22.202 -20.598 1 47.13 ? N09 HL9 201 A 1 HETATM 24 N N11 HL9 . . . F 2 -6.519 -19.967 -23.13 1 58.77 ? N11 HL9 201 A 1 HETATM 25 N N13 HL9 . . . F 2 -7.656 -18.242 -26.765 1 70.46 ? N13 HL9 201 A 1 HETATM 26 O O03 HL9 . . . F 2 1.511 -20.431 -11.732 1 42.91 ? O03 HL9 201 A 1 HETATM 27 O O07 HL9 . . . F 2 -4.768 -22.379 -18.487 1 45.67 ? O07 HL9 201 A 1 HETATM 28 S S04 HL9 . . . F 2 1.005 -19.865 -16.171 1 43.16 ? S04 HL9 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #