data_6T32 # _model_server_result.job_id V5d-B0hjNngGKL9ZgL7inA _model_server_result.datetime_utc '2024-11-17 07:56:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 6T32 # _exptl.entry_id 6T32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.542 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T32 _cell.length_a 57.33 _cell.length_b 85.085 _cell.length_c 99.444 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -49.722 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C20 H29 N5 O2 S' _chem_comp.formula_weight 403.542 _chem_comp.id HL9 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C25 HL9 doub 137 n y C28 N13 HL9 sing 138 n y C25 C24 HL9 sing 139 n y N13 C27 HL9 doub 140 n y C21 C20 HL9 sing 141 n n C21 N11 HL9 sing 142 n n C24 N11 HL9 sing 143 n n C24 C26 HL9 doub 144 n y C27 C26 HL9 sing 145 n y C20 C18 HL9 sing 146 n n N11 C22 HL9 sing 147 n n O07 C23 HL9 doub 148 n n C18 N09 HL9 sing 149 n n C18 C19 HL9 sing 150 n n C22 C19 HL9 sing 151 n n C23 N09 HL9 sing 152 n n C23 C17 HL9 sing 153 n n C17 C16 HL9 sing 154 n n C16 C15 HL9 sing 155 n n C15 C14 HL9 sing 156 n n C14 C01 HL9 sing 157 n n C01 C08 HL9 sing 158 n n C01 S04 HL9 sing 159 n n N06 C08 HL9 sing 160 n n N06 C05 HL9 sing 161 n n C08 C10 HL9 sing 162 n n S04 C12 HL9 sing 163 n n C05 O03 HL9 doub 164 n n C05 N02 HL9 sing 165 n n C10 C12 HL9 sing 166 n n C10 N02 HL9 sing 167 n n C01 H011 HL9 sing 168 n n C08 H081 HL9 sing 169 n n C10 H101 HL9 sing 170 n n C12 H122 HL9 sing 171 n n C12 H121 HL9 sing 172 n n C14 H142 HL9 sing 173 n n C14 H141 HL9 sing 174 n n C15 H151 HL9 sing 175 n n C15 H152 HL9 sing 176 n n C16 H162 HL9 sing 177 n n C16 H161 HL9 sing 178 n n C17 H171 HL9 sing 179 n n C17 H172 HL9 sing 180 n n C18 H181 HL9 sing 181 n n C19 H192 HL9 sing 182 n n C19 H191 HL9 sing 183 n n C20 H202 HL9 sing 184 n n C20 H201 HL9 sing 185 n n C21 H212 HL9 sing 186 n n C21 H211 HL9 sing 187 n n C22 H221 HL9 sing 188 n n C22 H222 HL9 sing 189 n n C25 H251 HL9 sing 190 n n C26 H261 HL9 sing 191 n n C27 H271 HL9 sing 192 n n C28 H281 HL9 sing 193 n n N02 H021 HL9 sing 194 n n N06 H061 HL9 sing 195 n n N09 H091 HL9 sing 196 n n # _atom_sites.entry_id 6T32 _atom_sites.fract_transf_matrix[1][1] 0.017443 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010056 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HL9 A 1 201 201 HL9 HL9 . D 2 HL9 B 1 201 201 HL9 HL9 . E 3 HOH A 1 301 188 HOH HOH . E 3 HOH A 2 302 64 HOH HOH . E 3 HOH A 3 303 58 HOH HOH . E 3 HOH A 4 304 120 HOH HOH . E 3 HOH A 5 305 139 HOH HOH . E 3 HOH A 6 306 134 HOH HOH . E 3 HOH A 7 307 63 HOH HOH . E 3 HOH A 8 308 170 HOH HOH . E 3 HOH A 9 309 211 HOH HOH . E 3 HOH A 10 310 39 HOH HOH . E 3 HOH A 11 311 1 HOH HOH . E 3 HOH A 12 312 50 HOH HOH . E 3 HOH A 13 313 5 HOH HOH . E 3 HOH A 14 314 36 HOH HOH . E 3 HOH A 15 315 69 HOH HOH . E 3 HOH A 16 316 131 HOH HOH . E 3 HOH A 17 317 38 HOH HOH . E 3 HOH A 18 318 136 HOH HOH . E 3 HOH A 19 319 26 HOH HOH . E 3 HOH A 20 320 124 HOH HOH . E 3 HOH A 21 321 113 HOH HOH . E 3 HOH A 22 322 73 HOH HOH . E 3 HOH A 23 323 121 HOH HOH . E 3 HOH A 24 324 127 HOH HOH . E 3 HOH A 25 325 15 HOH HOH . E 3 HOH A 26 326 13 HOH HOH . E 3 HOH A 27 327 2 HOH HOH . E 3 HOH A 28 328 23 HOH HOH . E 3 HOH A 29 329 195 HOH HOH . E 3 HOH A 30 330 51 HOH HOH . E 3 HOH A 31 331 49 HOH HOH . E 3 HOH A 32 332 18 HOH HOH . E 3 HOH A 33 333 59 HOH HOH . E 3 HOH A 34 334 47 HOH HOH . E 3 HOH A 35 335 66 HOH HOH . E 3 HOH A 36 336 48 HOH HOH . E 3 HOH A 37 337 37 HOH HOH . E 3 HOH A 38 338 109 HOH HOH . E 3 HOH A 39 339 3 HOH HOH . E 3 HOH A 40 340 128 HOH HOH . E 3 HOH A 41 341 196 HOH HOH . E 3 HOH A 42 342 65 HOH HOH . E 3 HOH A 43 343 115 HOH HOH . E 3 HOH A 44 344 132 HOH HOH . E 3 HOH A 45 345 122 HOH HOH . E 3 HOH A 46 346 31 HOH HOH . E 3 HOH A 47 347 172 HOH HOH . E 3 HOH A 48 348 112 HOH HOH . E 3 HOH A 49 349 67 HOH HOH . E 3 HOH A 50 350 22 HOH HOH . E 3 HOH A 51 351 118 HOH HOH . E 3 HOH A 52 352 32 HOH HOH . E 3 HOH A 53 353 44 HOH HOH . E 3 HOH A 54 354 72 HOH HOH . E 3 HOH A 55 355 29 HOH HOH . E 3 HOH A 56 356 33 HOH HOH . E 3 HOH A 57 357 76 HOH HOH . E 3 HOH A 58 358 123 HOH HOH . E 3 HOH A 59 359 130 HOH HOH . E 3 HOH A 60 360 24 HOH HOH . E 3 HOH A 61 361 4 HOH HOH . E 3 HOH A 62 362 190 HOH HOH . E 3 HOH A 63 363 35 HOH HOH . E 3 HOH A 64 364 17 HOH HOH . E 3 HOH A 65 365 140 HOH HOH . E 3 HOH A 66 366 9 HOH HOH . E 3 HOH A 67 367 46 HOH HOH . E 3 HOH A 68 368 57 HOH HOH . E 3 HOH A 69 369 20 HOH HOH . E 3 HOH A 70 370 30 HOH HOH . E 3 HOH A 71 371 216 HOH HOH . E 3 HOH A 72 372 21 HOH HOH . E 3 HOH A 73 373 108 HOH HOH . E 3 HOH A 74 374 71 HOH HOH . E 3 HOH A 75 375 14 HOH HOH . E 3 HOH A 76 376 53 HOH HOH . E 3 HOH A 77 377 34 HOH HOH . E 3 HOH A 78 378 191 HOH HOH . E 3 HOH A 79 379 137 HOH HOH . E 3 HOH A 80 380 6 HOH HOH . E 3 HOH A 81 381 135 HOH HOH . E 3 HOH A 82 382 75 HOH HOH . E 3 HOH A 83 383 61 HOH HOH . E 3 HOH A 84 384 74 HOH HOH . E 3 HOH A 85 385 56 HOH HOH . E 3 HOH A 86 386 68 HOH HOH . E 3 HOH A 87 387 119 HOH HOH . E 3 HOH A 88 388 129 HOH HOH . E 3 HOH A 89 389 114 HOH HOH . E 3 HOH A 90 390 197 HOH HOH . E 3 HOH A 91 391 54 HOH HOH . E 3 HOH A 92 392 116 HOH HOH . E 3 HOH A 93 393 126 HOH HOH . E 3 HOH A 94 394 175 HOH HOH . E 3 HOH A 95 395 133 HOH HOH . E 3 HOH A 96 396 210 HOH HOH . E 3 HOH A 97 397 194 HOH HOH . E 3 HOH A 98 398 193 HOH HOH . E 3 HOH A 99 399 198 HOH HOH . E 3 HOH A 100 400 217 HOH HOH . E 3 HOH A 101 401 55 HOH HOH . E 3 HOH A 102 402 70 HOH HOH . E 3 HOH A 103 403 117 HOH HOH . E 3 HOH A 104 404 171 HOH HOH . E 3 HOH A 105 405 111 HOH HOH . E 3 HOH A 106 406 187 HOH HOH . E 3 HOH A 107 407 192 HOH HOH . E 3 HOH A 108 408 52 HOH HOH . E 3 HOH A 109 409 60 HOH HOH . E 3 HOH A 110 410 200 HOH HOH . E 3 HOH A 111 411 173 HOH HOH . E 3 HOH A 112 412 43 HOH HOH . E 3 HOH A 113 413 177 HOH HOH . E 3 HOH A 114 414 62 HOH HOH . E 3 HOH A 115 415 178 HOH HOH . E 3 HOH A 116 416 218 HOH HOH . F 3 HOH B 1 301 97 HOH HOH . F 3 HOH B 2 302 107 HOH HOH . F 3 HOH B 3 303 201 HOH HOH . F 3 HOH B 4 304 155 HOH HOH . F 3 HOH B 5 305 144 HOH HOH . F 3 HOH B 6 306 104 HOH HOH . F 3 HOH B 7 307 153 HOH HOH . F 3 HOH B 8 308 87 HOH HOH . F 3 HOH B 9 309 85 HOH HOH . F 3 HOH B 10 310 160 HOH HOH . F 3 HOH B 11 311 25 HOH HOH . F 3 HOH B 12 312 106 HOH HOH . F 3 HOH B 13 313 105 HOH HOH . F 3 HOH B 14 314 28 HOH HOH . F 3 HOH B 15 315 77 HOH HOH . F 3 HOH B 16 316 161 HOH HOH . F 3 HOH B 17 317 41 HOH HOH . F 3 HOH B 18 318 88 HOH HOH . F 3 HOH B 19 319 181 HOH HOH . F 3 HOH B 20 320 145 HOH HOH . F 3 HOH B 21 321 93 HOH HOH . F 3 HOH B 22 322 103 HOH HOH . F 3 HOH B 23 323 143 HOH HOH . F 3 HOH B 24 324 147 HOH HOH . F 3 HOH B 25 325 12 HOH HOH . F 3 HOH B 26 326 168 HOH HOH . F 3 HOH B 27 327 83 HOH HOH . F 3 HOH B 28 328 16 HOH HOH . F 3 HOH B 29 329 152 HOH HOH . F 3 HOH B 30 330 98 HOH HOH . F 3 HOH B 31 331 159 HOH HOH . F 3 HOH B 32 332 184 HOH HOH . F 3 HOH B 33 333 11 HOH HOH . F 3 HOH B 34 334 95 HOH HOH . F 3 HOH B 35 335 86 HOH HOH . F 3 HOH B 36 336 156 HOH HOH . F 3 HOH B 37 337 80 HOH HOH . F 3 HOH B 38 338 78 HOH HOH . F 3 HOH B 39 339 167 HOH HOH . F 3 HOH B 40 340 10 HOH HOH . F 3 HOH B 41 341 81 HOH HOH . F 3 HOH B 42 342 94 HOH HOH . F 3 HOH B 43 343 214 HOH HOH . F 3 HOH B 44 344 92 HOH HOH . F 3 HOH B 45 345 148 HOH HOH . F 3 HOH B 46 346 19 HOH HOH . F 3 HOH B 47 347 84 HOH HOH . F 3 HOH B 48 348 165 HOH HOH . F 3 HOH B 49 349 102 HOH HOH . F 3 HOH B 50 350 7 HOH HOH . F 3 HOH B 51 351 163 HOH HOH . F 3 HOH B 52 352 158 HOH HOH . F 3 HOH B 53 353 162 HOH HOH . F 3 HOH B 54 354 203 HOH HOH . F 3 HOH B 55 355 91 HOH HOH . F 3 HOH B 56 356 154 HOH HOH . F 3 HOH B 57 357 166 HOH HOH . F 3 HOH B 58 358 206 HOH HOH . F 3 HOH B 59 359 204 HOH HOH . F 3 HOH B 60 360 99 HOH HOH . F 3 HOH B 61 361 202 HOH HOH . F 3 HOH B 62 362 209 HOH HOH . F 3 HOH B 63 363 215 HOH HOH . F 3 HOH B 64 364 157 HOH HOH . F 3 HOH B 65 365 179 HOH HOH . F 3 HOH B 66 366 207 HOH HOH . F 3 HOH B 67 367 151 HOH HOH . F 3 HOH B 68 368 89 HOH HOH . F 3 HOH B 69 369 27 HOH HOH . F 3 HOH B 70 370 96 HOH HOH . F 3 HOH B 71 371 82 HOH HOH . F 3 HOH B 72 372 208 HOH HOH . F 3 HOH B 73 373 205 HOH HOH . F 3 HOH B 74 374 40 HOH HOH . F 3 HOH B 75 375 164 HOH HOH . F 3 HOH B 76 376 183 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 HL9 . . . D 2 -10.617 -17.068 -26.159 1 20.11 ? C01 HL9 201 B 1 HETATM 2 C C05 HL9 . . . D 2 -13.321 -18.714 -24.615 1 24.96 ? C05 HL9 201 B 1 HETATM 3 C C08 HL9 . . . D 2 -11.299 -17.504 -24.831 1 25.76 ? C08 HL9 201 B 1 HETATM 4 C C10 HL9 . . . D 2 -10.969 -19.01 -24.55 1 22.67 ? C10 HL9 201 B 1 HETATM 5 C C12 HL9 . . . D 2 -10.185 -19.539 -25.768 1 23.3 ? C12 HL9 201 B 1 HETATM 6 C C14 HL9 . . . D 2 -11.282 -15.856 -26.799 1 24.55 ? C14 HL9 201 B 1 HETATM 7 C C15 HL9 . . . D 2 -10.394 -15.233 -27.88 1 25.81 ? C15 HL9 201 B 1 HETATM 8 C C16 HL9 . . . D 2 -11.017 -14.03 -28.583 1 27.47 ? C16 HL9 201 B 1 HETATM 9 C C17 HL9 . . . D 2 -10.006 -13.555 -29.619 1 26.55 ? C17 HL9 201 B 1 HETATM 10 C C18 HL9 . . . D 2 -6.72 -11.758 -29.225 1 33.12 ? C18 HL9 201 B 1 HETATM 11 C C19 HL9 . . . D 2 -6.14 -11.02 -30.44 1 37.59 ? C19 HL9 201 B 1 HETATM 12 C C20 HL9 . . . D 2 -5.641 -12.544 -28.465 1 32.55 ? C20 HL9 201 B 1 HETATM 13 C C21 HL9 . . . D 2 -4.546 -11.569 -28.009 1 36.26 ? C21 HL9 201 B 1 HETATM 14 C C22 HL9 . . . D 2 -4.997 -10.089 -30.068 1 40.67 ? C22 HL9 201 B 1 HETATM 15 C C23 HL9 . . . D 2 -8.92 -12.731 -28.988 1 28.93 ? C23 HL9 201 B 1 HETATM 16 C C24 HL9 . . . D 2 -2.783 -10.129 -29.054 1 46.18 ? C24 HL9 201 B 1 HETATM 17 C C25 HL9 . . . D 2 -2.316 -9.28 -30.092 1 48.03 ? C25 HL9 201 B 1 HETATM 18 C C26 HL9 . . . D 2 -1.861 -10.432 -28.026 1 46.27 ? C26 HL9 201 B 1 HETATM 19 C C27 HL9 . . . D 2 -0.581 -9.893 -28.107 1 50.27 ? C27 HL9 201 B 1 HETATM 20 C C28 HL9 . . . D 2 -1.009 -8.81 -30.053 1 50.84 ? C28 HL9 201 B 1 HETATM 21 N N02 HL9 . . . D 2 -12.3 -19.599 -24.43 1 22.9 ? N02 HL9 201 B 1 HETATM 22 N N06 HL9 . . . D 2 -12.749 -17.488 -24.86 1 26.76 ? N06 HL9 201 B 1 HETATM 23 N N09 HL9 . . . D 2 -7.809 -12.599 -29.749 1 26.79 ? N09 HL9 201 B 1 HETATM 24 N N11 HL9 . . . D 2 -4.077 -10.603 -29.043 1 39.02 ? N11 HL9 201 B 1 HETATM 25 N N13 HL9 . . . D 2 -0.124 -9.093 -29.081 1 50.82 ? N13 HL9 201 B 1 HETATM 26 O O03 HL9 . . . D 2 -14.538 -18.96 -24.57 1 24.72 ? O03 HL9 201 B 1 HETATM 27 O O07 HL9 . . . D 2 -9.036 -12.202 -27.867 1 28.49 ? O07 HL9 201 B 1 HETATM 28 S S04 HL9 . . . D 2 -10.803 -18.544 -27.176 1 23.99 ? S04 HL9 201 B 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #