data_6T3E
#
_model_server_result.job_id            LlaIiE983HRTt8AYAMNW2g 
_model_server_result.datetime_utc      '2025-04-27 07:42:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    6T3E 
#
_exptl.entry_id    6T3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.906 
_cell.angle_gamma         90 
_cell.entry_id            6T3E 
_cell.length_a            82.688 
_cell.length_b            51.509 
_cell.length_c            92.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 237 n n 
PA O2A NAI sing 238 n n 
PA O5B NAI sing 239 n n 
PA O3 NAI sing 240 n n 
O2A HOA2 NAI sing 241 n n 
O5B C5B NAI sing 242 n n 
C5B C4B NAI sing 243 n n 
C5B H51A NAI sing 244 n n 
C5B H52A NAI sing 245 n n 
C4B O4B NAI sing 246 n n 
C4B C3B NAI sing 247 n n 
C4B H4B NAI sing 248 n n 
O4B C1B NAI sing 249 n n 
C3B O3B NAI sing 250 n n 
C3B C2B NAI sing 251 n n 
C3B H3B NAI sing 252 n n 
O3B HO3A NAI sing 253 n n 
C2B O2B NAI sing 254 n n 
C2B C1B NAI sing 255 n n 
C2B H2B NAI sing 256 n n 
O2B HO2A NAI sing 257 n n 
C1B N9A NAI sing 258 n n 
C1B H1B NAI sing 259 n n 
N9A C8A NAI sing 260 n y 
N9A C4A NAI sing 261 n y 
C8A N7A NAI doub 262 n y 
C8A H8A NAI sing 263 n n 
N7A C5A NAI sing 264 n y 
C5A C6A NAI sing 265 n y 
C5A C4A NAI doub 266 n y 
C6A N6A NAI sing 267 n n 
C6A N1A NAI doub 268 n y 
N6A H61A NAI sing 269 n n 
N6A H62A NAI sing 270 n n 
N1A C2A NAI sing 271 n y 
C2A N3A NAI doub 272 n y 
C2A H2A NAI sing 273 n n 
N3A C4A NAI sing 274 n y 
O3 PN NAI sing 275 n n 
PN O1N NAI sing 276 n n 
PN O2N NAI doub 277 n n 
PN O5D NAI sing 278 n n 
O1N HO1N NAI sing 279 n n 
O5D C5D NAI sing 280 n n 
C5D C4D NAI sing 281 n n 
C5D H51N NAI sing 282 n n 
C5D H52N NAI sing 283 n n 
C4D O4D NAI sing 284 n n 
C4D C3D NAI sing 285 n n 
C4D H4D NAI sing 286 n n 
O4D C1D NAI sing 287 n n 
C3D O3D NAI sing 288 n n 
C3D C2D NAI sing 289 n n 
C3D H3D NAI sing 290 n n 
O3D HO3N NAI sing 291 n n 
C2D O2D NAI sing 292 n n 
C2D C1D NAI sing 293 n n 
C2D H2D NAI sing 294 n n 
O2D HO2N NAI sing 295 n n 
C1D N1N NAI sing 296 n n 
C1D H1D NAI sing 297 n n 
N1N C2N NAI sing 298 n n 
N1N C6N NAI sing 299 n n 
C2N C3N NAI doub 300 n n 
C2N H2N NAI sing 301 n n 
C3N C7N NAI sing 302 n n 
C3N C4N NAI sing 303 n n 
C7N O7N NAI doub 304 n n 
C7N N7N NAI sing 305 n n 
N7N H71N NAI sing 306 n n 
N7N H72N NAI sing 307 n n 
C4N C5N NAI sing 308 n n 
C4N H4N NAI sing 309 n n 
C4N H42N NAI sing 310 n n 
C5N C6N NAI doub 311 n n 
C5N H5N NAI sing 312 n n 
C6N H6N NAI sing 313 n n 
#
_atom_sites.entry_id                     6T3E 
_atom_sites.fract_transf_matrix[1][1]    0.012094 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005874 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019414 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PRO A 1 401 1 PRO PRO . 
D 3 NAI A 1 402 1 NAI NAI . 
E 2 PRO B 1 401 1 PRO PRO . 
F 3 NAI B 1 402 1 NAI NAI . 
G 4 HOH A 1 501 44 HOH HOH . 
G 4 HOH A 2 502 45 HOH HOH . 
G 4 HOH A 3 503 116 HOH HOH . 
G 4 HOH A 4 504 118 HOH HOH . 
G 4 HOH A 5 505 46 HOH HOH . 
G 4 HOH A 6 506 13 HOH HOH . 
G 4 HOH A 7 507 120 HOH HOH . 
G 4 HOH A 8 508 2 HOH HOH . 
G 4 HOH A 9 509 77 HOH HOH . 
H 4 HOH B 1 501 65 HOH HOH . 
H 4 HOH B 2 502 43 HOH HOH . 
H 4 HOH B 3 503 70 HOH HOH . 
H 4 HOH B 4 504 1 HOH HOH . 
H 4 HOH B 5 505 122 HOH HOH . 
H 4 HOH B 6 506 62 HOH HOH . 
H 4 HOH B 7 507 6 HOH HOH . 
H 4 HOH B 8 508 42 HOH HOH . 
H 4 HOH B 9 509 12 HOH HOH . 
H 4 HOH B 10 510 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . D 3 6.193 -0.596 15.425 1 26.9 ? PA NAI 402 A 1 
HETATM 2 O O1A NAI . . . D 3 5.118 -0.059 14.518 1 38.64 ? O1A NAI 402 A 1 
HETATM 3 O O2A NAI . . . D 3 6.108 -2.097 15.531 1 33.16 ? O2A NAI 402 A 1 
HETATM 4 O O5B NAI . . . D 3 6.18 0.058 16.949 1 33.59 ? O5B NAI 402 A 1 
HETATM 5 C C5B NAI . . . D 3 6.059 1.464 17.063 1 34.51 ? C5B NAI 402 A 1 
HETATM 6 C C4B NAI . . . D 3 5.353 1.781 18.445 1 38.44 ? C4B NAI 402 A 1 
HETATM 7 O O4B NAI . . . D 3 5.453 3.055 18.634 1 41.49 ? O4B NAI 402 A 1 
HETATM 8 C C3B NAI . . . D 3 3.839 1.463 18.348 1 37.95 ? C3B NAI 402 A 1 
HETATM 9 O O3B NAI . . . D 3 3.41 0.634 19.336 1 36.77 ? O3B NAI 402 A 1 
HETATM 10 C C2B NAI . . . D 3 3.166 2.825 18.539 1 37.42 ? C2B NAI 402 A 1 
HETATM 11 O O2B NAI . . . D 3 1.883 2.526 19.283 1 41.1 ? O2B NAI 402 A 1 
HETATM 12 C C1B NAI . . . D 3 4.02 3.512 19.242 1 37.65 ? C1B NAI 402 A 1 
HETATM 13 N N9A NAI . . . D 3 3.802 4.926 19.088 1 38.57 ? N9A NAI 402 A 1 
HETATM 14 C C8A NAI . . . D 3 3.621 5.526 17.913 1 39.48 ? C8A NAI 402 A 1 
HETATM 15 N N7A NAI . . . D 3 3.436 6.834 18.138 1 41.34 ? N7A NAI 402 A 1 
HETATM 16 C C5A NAI . . . D 3 3.503 7.051 19.463 1 39.21 ? C5A NAI 402 A 1 
HETATM 17 C C6A NAI . . . D 3 3.375 8.201 20.216 1 40.03 ? C6A NAI 402 A 1 
HETATM 18 N N6A NAI . . . D 3 3.117 9.595 19.903 1 40.58 ? N6A NAI 402 A 1 
HETATM 19 N N1A NAI . . . D 3 3.489 8.144 21.539 1 41.3 ? N1A NAI 402 A 1 
HETATM 20 C C2A NAI . . . D 3 3.733 6.955 22.138 1 37.09 ? C2A NAI 402 A 1 
HETATM 21 N N3A NAI . . . D 3 3.844 5.824 21.405 1 36.74 ? N3A NAI 402 A 1 
HETATM 22 C C4A NAI . . . D 3 3.729 5.879 20.052 1 39.42 ? C4A NAI 402 A 1 
HETATM 23 O O3 NAI . . . D 3 7.636 -0.188 14.704 1 37.78 ? O3 NAI 402 A 1 
HETATM 24 P PN NAI . . . D 3 9.123 -0.665 15.264 1 33.64 ? PN NAI 402 A 1 
HETATM 25 O O1N NAI . . . D 3 9.584 -1.786 14.374 1 39.5 ? O1N NAI 402 A 1 
HETATM 26 O O2N NAI . . . D 3 9.044 -1.028 16.734 1 31.4 ? O2N NAI 402 A 1 
HETATM 27 O O5D NAI . . . D 3 10.147 0.592 15.09 1 38.09 ? O5D NAI 402 A 1 
HETATM 28 C C5D NAI . . . D 3 9.939 1.645 15.956 1 39.35 ? C5D NAI 402 A 1 
HETATM 29 C C4D NAI . . . D 3 10.846 2.834 15.552 1 40.18 ? C4D NAI 402 A 1 
HETATM 30 O O4D NAI . . . D 3 12.083 2.412 15.483 1 37.64 ? O4D NAI 402 A 1 
HETATM 31 C C3D NAI . . . D 3 10.482 3.349 14.153 1 37.02 ? C3D NAI 402 A 1 
HETATM 32 O O3D NAI . . . D 3 10.675 4.724 14.074 1 31.4 ? O3D NAI 402 A 1 
HETATM 33 C C2D NAI . . . D 3 11.516 2.672 13.26 1 38.54 ? C2D NAI 402 A 1 
HETATM 34 O O2D NAI . . . D 3 11.566 3.482 11.964 1 40.6 ? O2D NAI 402 A 1 
HETATM 35 C C1D NAI . . . D 3 12.587 2.787 14.004 1 40.93 ? C1D NAI 402 A 1 
HETATM 36 N N1N NAI . . . D 3 13.651 1.831 13.644 1 42.57 ? N1N NAI 402 A 1 
HETATM 37 C C2N NAI . . . D 3 15.052 2.187 13.799 1 40.6 ? C2N NAI 402 A 1 
HETATM 38 C C3N NAI . . . D 3 16.126 1.071 13.865 1 40.99 ? C3N NAI 402 A 1 
HETATM 39 C C7N NAI . . . D 3 17.544 1.43 14.385 1 37.35 ? C7N NAI 402 A 1 
HETATM 40 O O7N NAI . . . D 3 18.477 0.79 14.073 1 41.06 ? O7N NAI 402 A 1 
HETATM 41 N N7N NAI . . . D 3 17.671 2.584 15.284 1 34.11 ? N7N NAI 402 A 1 
HETATM 42 C C4N NAI . . . D 3 15.716 -0.385 13.787 1 43.37 ? C4N NAI 402 A 1 
HETATM 43 C C5N NAI . . . D 3 14.341 -0.617 13.126 1 40.9 ? C5N NAI 402 A 1 
HETATM 44 C C6N NAI . . . D 3 13.306 0.516 13.139 1 44.25 ? C6N NAI 402 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           242 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           44 
#