data_6T3Q # _model_server_result.job_id ikDJ-9TN8u8W-0F133_5Ww _model_server_result.datetime_utc '2024-11-19 16:42:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":305}' # _entry.id 6T3Q # _exptl.entry_id 6T3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.585 _cell.angle_gamma 90 _cell.entry_id 6T3Q _cell.length_a 70.009 _cell.length_b 71.29 _cell.length_c 72.572 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 D C1 NAG . H NAG 301 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale2 C C GLU 8 I GLU 525 1_555 C N TYS 9 I TYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C TYS 9 I TYS 526 1_555 C N LEU 10 I LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 H NA NA . H NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 H NA NA . H NA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 B O PHE 215 H PHE 204 1_555 H NA NA . H NA 305 4_958 A ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc4 B O ARG 233 H ARG 221 1_555 G NA NA . H NA 304 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc5 B O LYS 236 H LYS 224 1_555 G NA NA . H NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 G NA NA . H NA 304 1_555 K O HOH . H HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 G NA NA . H NA 304 1_555 K O HOH . H HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc8 G NA NA . H NA 304 1_555 K O HOH . H HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc9 G NA NA . H NA 304 1_555 K O HOH . H HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc10 H NA NA . H NA 305 1_555 K O HOH . H HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc11 H NA NA . H NA 305 1_555 K O HOH . H HOH 583 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc12 H NA NA . H NA 305 1_555 K O HOH . H HOH 592 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6T3Q _atom_sites.fract_transf_matrix[1][1] 0.014284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002669 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014018 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 301 60 NAG XE5 . E 5 PO4 H 1 302 2 PO4 PO4 . F 6 GOL H 1 303 1 GOL GOL . G 7 NA H 1 304 1 NA NA . H 7 NA H 1 305 1 NA NA . I 8 M6Q H 1 306 1 M6Q 16F . J 9 HOH L 1 101 276 HOH HOH . J 9 HOH L 2 102 280 HOH HOH . J 9 HOH L 3 103 168 HOH HOH . J 9 HOH L 4 104 59 HOH HOH . J 9 HOH L 5 105 40 HOH HOH . J 9 HOH L 6 106 24 HOH HOH . J 9 HOH L 7 107 37 HOH HOH . J 9 HOH L 8 108 191 HOH HOH . J 9 HOH L 9 109 61 HOH HOH . J 9 HOH L 10 110 238 HOH HOH . J 9 HOH L 11 111 48 HOH HOH . J 9 HOH L 12 112 19 HOH HOH . J 9 HOH L 13 113 420 HOH HOH . J 9 HOH L 14 114 309 HOH HOH . J 9 HOH L 15 115 256 HOH HOH . J 9 HOH L 16 116 275 HOH HOH . J 9 HOH L 17 117 148 HOH HOH . J 9 HOH L 18 118 264 HOH HOH . J 9 HOH L 19 119 99 HOH HOH . J 9 HOH L 20 120 11 HOH HOH . J 9 HOH L 21 121 176 HOH HOH . J 9 HOH L 22 122 76 HOH HOH . J 9 HOH L 23 123 305 HOH HOH . J 9 HOH L 24 124 312 HOH HOH . J 9 HOH L 25 125 271 HOH HOH . J 9 HOH L 26 126 421 HOH HOH . J 9 HOH L 27 127 266 HOH HOH . J 9 HOH L 28 128 296 HOH HOH . J 9 HOH L 29 129 92 HOH HOH . J 9 HOH L 30 130 105 HOH HOH . J 9 HOH L 31 131 240 HOH HOH . J 9 HOH L 32 132 137 HOH HOH . J 9 HOH L 33 133 209 HOH HOH . J 9 HOH L 34 134 160 HOH HOH . K 9 HOH H 1 401 313 HOH HOH . K 9 HOH H 2 402 378 HOH HOH . K 9 HOH H 3 403 102 HOH HOH . K 9 HOH H 4 404 43 HOH HOH . K 9 HOH H 5 405 302 HOH HOH . K 9 HOH H 6 406 287 HOH HOH . K 9 HOH H 7 407 125 HOH HOH . K 9 HOH H 8 408 190 HOH HOH . K 9 HOH H 9 409 154 HOH HOH . K 9 HOH H 10 410 338 HOH HOH . K 9 HOH H 11 411 341 HOH HOH . K 9 HOH H 12 412 54 HOH HOH . K 9 HOH H 13 413 258 HOH HOH . K 9 HOH H 14 414 146 HOH HOH . K 9 HOH H 15 415 155 HOH HOH . K 9 HOH H 16 416 103 HOH HOH . K 9 HOH H 17 417 153 HOH HOH . K 9 HOH H 18 418 327 HOH HOH . K 9 HOH H 19 419 422 HOH HOH . K 9 HOH H 20 420 110 HOH HOH . K 9 HOH H 21 421 55 HOH HOH . K 9 HOH H 22 422 386 HOH HOH . K 9 HOH H 23 423 127 HOH HOH . K 9 HOH H 24 424 156 HOH HOH . K 9 HOH H 25 425 352 HOH HOH . K 9 HOH H 26 426 68 HOH HOH . K 9 HOH H 27 427 106 HOH HOH . K 9 HOH H 28 428 107 HOH HOH . K 9 HOH H 29 429 326 HOH HOH . K 9 HOH H 30 430 75 HOH HOH . K 9 HOH H 31 431 33 HOH HOH . K 9 HOH H 32 432 77 HOH HOH . K 9 HOH H 33 433 65 HOH HOH . K 9 HOH H 34 434 345 HOH HOH . K 9 HOH H 35 435 71 HOH HOH . K 9 HOH H 36 436 293 HOH HOH . K 9 HOH H 37 437 265 HOH HOH . K 9 HOH H 38 438 135 HOH HOH . K 9 HOH H 39 439 274 HOH HOH . K 9 HOH H 40 440 58 HOH HOH . K 9 HOH H 41 441 133 HOH HOH . K 9 HOH H 42 442 50 HOH HOH . K 9 HOH H 43 443 200 HOH HOH . K 9 HOH H 44 444 49 HOH HOH . K 9 HOH H 45 445 57 HOH HOH . K 9 HOH H 46 446 30 HOH HOH . K 9 HOH H 47 447 17 HOH HOH . K 9 HOH H 48 448 16 HOH HOH . K 9 HOH H 49 449 100 HOH HOH . K 9 HOH H 50 450 183 HOH HOH . K 9 HOH H 51 451 159 HOH HOH . K 9 HOH H 52 452 283 HOH HOH . K 9 HOH H 53 453 250 HOH HOH . K 9 HOH H 54 454 7 HOH HOH . K 9 HOH H 55 455 23 HOH HOH . K 9 HOH H 56 456 22 HOH HOH . K 9 HOH H 57 457 205 HOH HOH . K 9 HOH H 58 458 207 HOH HOH . K 9 HOH H 59 459 254 HOH HOH . K 9 HOH H 60 460 166 HOH HOH . K 9 HOH H 61 461 86 HOH HOH . K 9 HOH H 62 462 426 HOH HOH . K 9 HOH H 63 463 241 HOH HOH . K 9 HOH H 64 464 257 HOH HOH . K 9 HOH H 65 465 272 HOH HOH . K 9 HOH H 66 466 83 HOH HOH . K 9 HOH H 67 467 66 HOH HOH . K 9 HOH H 68 468 339 HOH HOH . K 9 HOH H 69 469 26 HOH HOH . K 9 HOH H 70 470 300 HOH HOH . K 9 HOH H 71 471 67 HOH HOH . K 9 HOH H 72 472 53 HOH HOH . K 9 HOH H 73 473 252 HOH HOH . K 9 HOH H 74 474 4 HOH HOH . K 9 HOH H 75 475 32 HOH HOH . K 9 HOH H 76 476 70 HOH HOH . K 9 HOH H 77 477 64 HOH HOH . K 9 HOH H 78 478 15 HOH HOH . K 9 HOH H 79 479 179 HOH HOH . K 9 HOH H 80 480 131 HOH HOH . K 9 HOH H 81 481 115 HOH HOH . K 9 HOH H 82 482 186 HOH HOH . K 9 HOH H 83 483 119 HOH HOH . K 9 HOH H 84 484 425 HOH HOH . K 9 HOH H 85 485 97 HOH HOH . K 9 HOH H 86 486 289 HOH HOH . K 9 HOH H 87 487 281 HOH HOH . K 9 HOH H 88 488 45 HOH HOH . K 9 HOH H 89 489 47 HOH HOH . K 9 HOH H 90 490 325 HOH HOH . K 9 HOH H 91 491 263 HOH HOH . K 9 HOH H 92 492 18 HOH HOH . K 9 HOH H 93 493 219 HOH HOH . K 9 HOH H 94 494 9 HOH HOH . K 9 HOH H 95 495 10 HOH HOH . K 9 HOH H 96 496 2 HOH HOH . K 9 HOH H 97 497 314 HOH HOH . K 9 HOH H 98 498 192 HOH HOH . K 9 HOH H 99 499 151 HOH HOH . K 9 HOH H 100 500 321 HOH HOH . K 9 HOH H 101 501 299 HOH HOH . K 9 HOH H 102 502 73 HOH HOH . K 9 HOH H 103 503 39 HOH HOH . K 9 HOH H 104 504 36 HOH HOH . K 9 HOH H 105 505 366 HOH HOH . K 9 HOH H 106 506 25 HOH HOH . K 9 HOH H 107 507 72 HOH HOH . K 9 HOH H 108 508 158 HOH HOH . K 9 HOH H 109 509 230 HOH HOH . K 9 HOH H 110 510 111 HOH HOH . K 9 HOH H 111 511 8 HOH HOH . K 9 HOH H 112 512 28 HOH HOH . K 9 HOH H 113 513 20 HOH HOH . K 9 HOH H 114 514 51 HOH HOH . K 9 HOH H 115 515 1 HOH HOH . K 9 HOH H 116 516 178 HOH HOH . K 9 HOH H 117 517 255 HOH HOH . K 9 HOH H 118 518 270 HOH HOH . K 9 HOH H 119 519 5 HOH HOH . K 9 HOH H 120 520 44 HOH HOH . K 9 HOH H 121 521 129 HOH HOH . K 9 HOH H 122 522 63 HOH HOH . K 9 HOH H 123 523 117 HOH HOH . K 9 HOH H 124 524 391 HOH HOH . K 9 HOH H 125 525 114 HOH HOH . K 9 HOH H 126 526 31 HOH HOH . K 9 HOH H 127 527 121 HOH HOH . K 9 HOH H 128 528 124 HOH HOH . K 9 HOH H 129 529 285 HOH HOH . K 9 HOH H 130 530 78 HOH HOH . K 9 HOH H 131 531 60 HOH HOH . K 9 HOH H 132 532 27 HOH HOH . K 9 HOH H 133 533 201 HOH HOH . K 9 HOH H 134 534 140 HOH HOH . K 9 HOH H 135 535 112 HOH HOH . K 9 HOH H 136 536 96 HOH HOH . K 9 HOH H 137 537 136 HOH HOH . K 9 HOH H 138 538 14 HOH HOH . K 9 HOH H 139 539 424 HOH HOH . K 9 HOH H 140 540 149 HOH HOH . K 9 HOH H 141 541 144 HOH HOH . K 9 HOH H 142 542 165 HOH HOH . K 9 HOH H 143 543 12 HOH HOH . K 9 HOH H 144 544 407 HOH HOH . K 9 HOH H 145 545 62 HOH HOH . K 9 HOH H 146 546 13 HOH HOH . K 9 HOH H 147 547 172 HOH HOH . K 9 HOH H 148 548 215 HOH HOH . K 9 HOH H 149 549 84 HOH HOH . K 9 HOH H 150 550 94 HOH HOH . K 9 HOH H 151 551 348 HOH HOH . K 9 HOH H 152 552 259 HOH HOH . K 9 HOH H 153 553 188 HOH HOH . K 9 HOH H 154 554 139 HOH HOH . K 9 HOH H 155 555 362 HOH HOH . K 9 HOH H 156 556 89 HOH HOH . K 9 HOH H 157 557 269 HOH HOH . K 9 HOH H 158 558 123 HOH HOH . K 9 HOH H 159 559 109 HOH HOH . K 9 HOH H 160 560 324 HOH HOH . K 9 HOH H 161 561 199 HOH HOH . K 9 HOH H 162 562 69 HOH HOH . K 9 HOH H 163 563 35 HOH HOH . K 9 HOH H 164 564 95 HOH HOH . K 9 HOH H 165 565 398 HOH HOH . K 9 HOH H 166 566 134 HOH HOH . K 9 HOH H 167 567 318 HOH HOH . K 9 HOH H 168 568 330 HOH HOH . K 9 HOH H 169 569 268 HOH HOH . K 9 HOH H 170 570 130 HOH HOH . K 9 HOH H 171 571 104 HOH HOH . K 9 HOH H 172 572 198 HOH HOH . K 9 HOH H 173 573 120 HOH HOH . K 9 HOH H 174 574 418 HOH HOH . K 9 HOH H 175 575 311 HOH HOH . K 9 HOH H 176 576 225 HOH HOH . K 9 HOH H 177 577 171 HOH HOH . K 9 HOH H 178 578 101 HOH HOH . K 9 HOH H 179 579 81 HOH HOH . K 9 HOH H 180 580 397 HOH HOH . K 9 HOH H 181 581 396 HOH HOH . K 9 HOH H 182 582 29 HOH HOH . K 9 HOH H 183 583 93 HOH HOH . K 9 HOH H 184 584 295 HOH HOH . K 9 HOH H 185 585 390 HOH HOH . K 9 HOH H 186 586 400 HOH HOH . K 9 HOH H 187 587 143 HOH HOH . K 9 HOH H 188 588 221 HOH HOH . K 9 HOH H 189 589 417 HOH HOH . K 9 HOH H 190 590 278 HOH HOH . K 9 HOH H 191 591 182 HOH HOH . K 9 HOH H 192 592 253 HOH HOH . K 9 HOH H 193 593 279 HOH HOH . K 9 HOH H 194 594 193 HOH HOH . K 9 HOH H 195 595 340 HOH HOH . K 9 HOH H 196 596 267 HOH HOH . K 9 HOH H 197 597 392 HOH HOH . K 9 HOH H 198 598 284 HOH HOH . K 9 HOH H 199 599 116 HOH HOH . K 9 HOH H 200 600 260 HOH HOH . K 9 HOH H 201 601 227 HOH HOH . K 9 HOH H 202 602 194 HOH HOH . K 9 HOH H 203 603 358 HOH HOH . K 9 HOH H 204 604 395 HOH HOH . K 9 HOH H 205 605 233 HOH HOH . K 9 HOH H 206 606 380 HOH HOH . K 9 HOH H 207 607 246 HOH HOH . K 9 HOH H 208 608 409 HOH HOH . K 9 HOH H 209 609 393 HOH HOH . K 9 HOH H 210 610 80 HOH HOH . K 9 HOH H 211 611 245 HOH HOH . K 9 HOH H 212 612 91 HOH HOH . K 9 HOH H 213 613 243 HOH HOH . K 9 HOH H 214 614 150 HOH HOH . K 9 HOH H 215 615 320 HOH HOH . K 9 HOH H 216 616 389 HOH HOH . K 9 HOH H 217 617 290 HOH HOH . K 9 HOH H 218 618 261 HOH HOH . L 9 HOH I 1 601 118 HOH HOH . L 9 HOH I 2 602 387 HOH HOH . L 9 HOH I 3 603 203 HOH HOH . L 9 HOH I 4 604 46 HOH HOH . L 9 HOH I 5 605 189 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x 144.951 _atom_site.Cartn_y -18.456 _atom_site.Cartn_z 109.341 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 305 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 445 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #