data_6T3Z # _model_server_result.job_id 3zQy1vewgk4qxNBf06C8DA _model_server_result.datetime_utc '2024-10-20 00:28:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 6T3Z # _exptl.entry_id 6T3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T3Z _cell.length_a 59.313 _cell.length_b 59.313 _cell.length_c 265.37 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 237 n n C1 C3 MLI sing 238 n n C1 H11 MLI sing 239 n n C1 H12 MLI sing 240 n n C2 O6 MLI doub 241 n n C2 O7 MLI sing 242 n n C3 O8 MLI doub 243 n n C3 O9 MLI sing 244 n n # _atom_sites.entry_id 6T3Z _atom_sites.fract_transf_matrix[1][1] 0.01686 _atom_sites.fract_transf_matrix[1][2] 0.009734 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 1201 1 MLI MLI . C 3 HOH A 1 1301 40 HOH HOH . C 3 HOH A 2 1302 85 HOH HOH . C 3 HOH A 3 1303 86 HOH HOH . C 3 HOH A 4 1304 91 HOH HOH . C 3 HOH A 5 1305 50 HOH HOH . C 3 HOH A 6 1306 46 HOH HOH . C 3 HOH A 7 1307 88 HOH HOH . C 3 HOH A 8 1308 23 HOH HOH . C 3 HOH A 9 1309 99 HOH HOH . C 3 HOH A 10 1310 54 HOH HOH . C 3 HOH A 11 1311 47 HOH HOH . C 3 HOH A 12 1312 30 HOH HOH . C 3 HOH A 13 1313 100 HOH HOH . C 3 HOH A 14 1314 58 HOH HOH . C 3 HOH A 15 1315 37 HOH HOH . C 3 HOH A 16 1316 11 HOH HOH . C 3 HOH A 17 1317 62 HOH HOH . C 3 HOH A 18 1318 98 HOH HOH . C 3 HOH A 19 1319 67 HOH HOH . C 3 HOH A 20 1320 94 HOH HOH . C 3 HOH A 21 1321 2 HOH HOH . C 3 HOH A 22 1322 79 HOH HOH . C 3 HOH A 23 1323 66 HOH HOH . C 3 HOH A 24 1324 16 HOH HOH . C 3 HOH A 25 1325 8 HOH HOH . C 3 HOH A 26 1326 3 HOH HOH . C 3 HOH A 27 1327 71 HOH HOH . C 3 HOH A 28 1328 57 HOH HOH . C 3 HOH A 29 1329 44 HOH HOH . C 3 HOH A 30 1330 95 HOH HOH . C 3 HOH A 31 1331 15 HOH HOH . C 3 HOH A 32 1332 7 HOH HOH . C 3 HOH A 33 1333 36 HOH HOH . C 3 HOH A 34 1334 1 HOH HOH . C 3 HOH A 35 1335 83 HOH HOH . C 3 HOH A 36 1336 13 HOH HOH . C 3 HOH A 37 1337 24 HOH HOH . C 3 HOH A 38 1338 28 HOH HOH . C 3 HOH A 39 1339 5 HOH HOH . C 3 HOH A 40 1340 101 HOH HOH . C 3 HOH A 41 1341 45 HOH HOH . C 3 HOH A 42 1342 14 HOH HOH . C 3 HOH A 43 1343 96 HOH HOH . C 3 HOH A 44 1344 93 HOH HOH . C 3 HOH A 45 1345 73 HOH HOH . C 3 HOH A 46 1346 56 HOH HOH . C 3 HOH A 47 1347 34 HOH HOH . C 3 HOH A 48 1348 82 HOH HOH . C 3 HOH A 49 1349 53 HOH HOH . C 3 HOH A 50 1350 41 HOH HOH . C 3 HOH A 51 1351 64 HOH HOH . C 3 HOH A 52 1352 60 HOH HOH . C 3 HOH A 53 1353 90 HOH HOH . C 3 HOH A 54 1354 97 HOH HOH . C 3 HOH A 55 1355 68 HOH HOH . C 3 HOH A 56 1356 51 HOH HOH . C 3 HOH A 57 1357 29 HOH HOH . C 3 HOH A 58 1358 10 HOH HOH . C 3 HOH A 59 1359 77 HOH HOH . C 3 HOH A 60 1360 59 HOH HOH . C 3 HOH A 61 1361 18 HOH HOH . C 3 HOH A 62 1362 74 HOH HOH . C 3 HOH A 63 1363 42 HOH HOH . C 3 HOH A 64 1364 19 HOH HOH . C 3 HOH A 65 1365 49 HOH HOH . C 3 HOH A 66 1366 31 HOH HOH . C 3 HOH A 67 1367 61 HOH HOH . C 3 HOH A 68 1368 6 HOH HOH . C 3 HOH A 69 1369 20 HOH HOH . C 3 HOH A 70 1370 9 HOH HOH . C 3 HOH A 71 1371 4 HOH HOH . C 3 HOH A 72 1372 32 HOH HOH . C 3 HOH A 73 1373 17 HOH HOH . C 3 HOH A 74 1374 21 HOH HOH . C 3 HOH A 75 1375 22 HOH HOH . C 3 HOH A 76 1376 38 HOH HOH . C 3 HOH A 77 1377 84 HOH HOH . C 3 HOH A 78 1378 70 HOH HOH . C 3 HOH A 79 1379 25 HOH HOH . C 3 HOH A 80 1380 55 HOH HOH . C 3 HOH A 81 1381 26 HOH HOH . C 3 HOH A 82 1382 63 HOH HOH . C 3 HOH A 83 1383 78 HOH HOH . C 3 HOH A 84 1384 75 HOH HOH . C 3 HOH A 85 1385 89 HOH HOH . C 3 HOH A 86 1386 69 HOH HOH . C 3 HOH A 87 1387 81 HOH HOH . C 3 HOH A 88 1388 80 HOH HOH . C 3 HOH A 89 1389 39 HOH HOH . C 3 HOH A 90 1390 33 HOH HOH . C 3 HOH A 91 1391 72 HOH HOH . C 3 HOH A 92 1392 27 HOH HOH . C 3 HOH A 93 1393 76 HOH HOH . C 3 HOH A 94 1394 12 HOH HOH . C 3 HOH A 95 1395 92 HOH HOH . C 3 HOH A 96 1396 52 HOH HOH . C 3 HOH A 97 1397 87 HOH HOH . C 3 HOH A 98 1398 35 HOH HOH . C 3 HOH A 99 1399 48 HOH HOH . C 3 HOH A 100 1400 65 HOH HOH . C 3 HOH A 101 1401 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . B 2 12.292 52.009 135.684 1 54.88 ? C1 MLI 1201 A 1 HETATM 2 C C2 MLI . . . B 2 12.144 53.503 135.953 1 65.23 ? C2 MLI 1201 A 1 HETATM 3 C C3 MLI . . . B 2 11.348 51.631 134.545 1 42.36 ? C3 MLI 1201 A 1 HETATM 4 O O6 MLI . . . B 2 11.859 54.299 135.01 1 63.2 ? O6 MLI 1201 A 1 HETATM 5 O O7 MLI . . . B 2 12.314 53.934 137.124 1 82.44 ? O7 MLI 1201 A 1 HETATM 6 O O8 MLI . . . B 2 11.183 52.409 133.562 1 47.42 ? O8 MLI 1201 A 1 HETATM 7 O O9 MLI . . . B 2 10.726 50.539 134.601 1 49.37 ? O9 MLI 1201 A 1 HETATM 8 H H11 MLI . . . B 2 13.207 51.812 135.429 1 66.34 ? H11 MLI 1201 A 1 HETATM 9 H H12 MLI . . . B 2 12.059 51.509 136.482 1 66.34 ? H12 MLI 1201 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #