data_6T4W # _model_server_result.job_id ryRp_W1NSycdQ9OaRQr8QQ _model_server_result.datetime_utc '2024-11-18 01:26:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":804}' # _entry.id 6T4W # _exptl.entry_id 6T4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.653 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3alpha,8alpha)-cholest-5-ene-3,20-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T4W _cell.length_a 108.317 _cell.length_b 108.317 _cell.length_c 99.332 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H46 O2' _chem_comp.formula_weight 402.653 _chem_comp.id HCD _chem_comp.mon_nstd_flag . _chem_comp.name (3alpha,8alpha)-cholest-5-ene-3,20-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 20S-hydroxycholesterol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HCD sing 142 n n C1 C10 HCD sing 143 n n O1 C3 HCD sing 144 n n C2 C3 HCD sing 145 n n O2 C20 HCD sing 146 n n C3 C4 HCD sing 147 n n C4 C5 HCD sing 148 n n C5 C6 HCD doub 149 n n C5 C10 HCD sing 150 n n C6 C7 HCD sing 151 n n C7 C8 HCD sing 152 n n C8 C9 HCD sing 153 n n C8 C14 HCD sing 154 n n C9 C10 HCD sing 155 n n C9 C11 HCD sing 156 n n C10 C19 HCD sing 157 n n C11 C12 HCD sing 158 n n C12 C13 HCD sing 159 n n C13 C14 HCD sing 160 n n C13 C17 HCD sing 161 n n C13 C18 HCD sing 162 n n C14 C15 HCD sing 163 n n C15 C16 HCD sing 164 n n C16 C17 HCD sing 165 n n C17 C20 HCD sing 166 n n C20 C21 HCD sing 167 n n C20 C22 HCD sing 168 n n C22 C23 HCD sing 169 n n C23 C24 HCD sing 170 n n C24 C25 HCD sing 171 n n C25 C26 HCD sing 172 n n C25 C27 HCD sing 173 n n C1 H1 HCD sing 174 n n C1 H1A HCD sing 175 n n O1 HO1 HCD sing 176 n n C2 H2 HCD sing 177 n n C2 H2A HCD sing 178 n n O2 HO2 HCD sing 179 n n C3 H3 HCD sing 180 n n C4 H4 HCD sing 181 n n C4 H4A HCD sing 182 n n C6 H6 HCD sing 183 n n C7 H7 HCD sing 184 n n C7 H7A HCD sing 185 n n C8 H8 HCD sing 186 n n C9 H9 HCD sing 187 n n C11 H11 HCD sing 188 n n C11 H11A HCD sing 189 n n C12 H12 HCD sing 190 n n C12 H12A HCD sing 191 n n C14 H14 HCD sing 192 n n C15 H15 HCD sing 193 n n C15 H15A HCD sing 194 n n C16 H16 HCD sing 195 n n C16 H16A HCD sing 196 n n C17 H17 HCD sing 197 n n C18 H18 HCD sing 198 n n C18 H18A HCD sing 199 n n C18 H18B HCD sing 200 n n C19 H19 HCD sing 201 n n C19 H19A HCD sing 202 n n C19 H19B HCD sing 203 n n C21 H21 HCD sing 204 n n C21 H21A HCD sing 205 n n C21 H21B HCD sing 206 n n C22 H22 HCD sing 207 n n C22 H22A HCD sing 208 n n C23 H23 HCD sing 209 n n C23 H23A HCD sing 210 n n C24 H24 HCD sing 211 n n C24 H24A HCD sing 212 n n C25 H25 HCD sing 213 n n C26 H26 HCD sing 214 n n C26 H26A HCD sing 215 n n C26 H26B HCD sing 216 n n C27 H27 HCD sing 217 n n C27 H27A HCD sing 218 n n C27 H27B HCD sing 219 n n # _atom_sites.entry_id 6T4W _atom_sites.fract_transf_matrix[1][1] 0.009232 _atom_sites.fract_transf_matrix[1][2] 0.00533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 801 801 GOL GOL . C 2 GOL A 1 802 901 GOL GOL . D 3 MJE A 1 803 1001 MJE MJE . E 4 HCD A 1 804 1101 HCD HCD . F 5 HOH A 1 901 198 HOH HOH . F 5 HOH A 2 902 19 HOH HOH . F 5 HOH A 3 903 177 HOH HOH . F 5 HOH A 4 904 83 HOH HOH . F 5 HOH A 5 905 88 HOH HOH . F 5 HOH A 6 906 89 HOH HOH . F 5 HOH A 7 907 47 HOH HOH . F 5 HOH A 8 908 13 HOH HOH . F 5 HOH A 9 909 120 HOH HOH . F 5 HOH A 10 910 152 HOH HOH . F 5 HOH A 11 911 128 HOH HOH . F 5 HOH A 12 912 39 HOH HOH . F 5 HOH A 13 913 100 HOH HOH . F 5 HOH A 14 914 133 HOH HOH . F 5 HOH A 15 915 134 HOH HOH . F 5 HOH A 16 916 27 HOH HOH . F 5 HOH A 17 917 182 HOH HOH . F 5 HOH A 18 918 17 HOH HOH . F 5 HOH A 19 919 53 HOH HOH . F 5 HOH A 20 920 157 HOH HOH . F 5 HOH A 21 921 94 HOH HOH . F 5 HOH A 22 922 63 HOH HOH . F 5 HOH A 23 923 107 HOH HOH . F 5 HOH A 24 924 76 HOH HOH . F 5 HOH A 25 925 151 HOH HOH . F 5 HOH A 26 926 87 HOH HOH . F 5 HOH A 27 927 112 HOH HOH . F 5 HOH A 28 928 31 HOH HOH . F 5 HOH A 29 929 45 HOH HOH . F 5 HOH A 30 930 166 HOH HOH . F 5 HOH A 31 931 37 HOH HOH . F 5 HOH A 32 932 61 HOH HOH . F 5 HOH A 33 933 132 HOH HOH . F 5 HOH A 34 934 51 HOH HOH . F 5 HOH A 35 935 149 HOH HOH . F 5 HOH A 36 936 23 HOH HOH . F 5 HOH A 37 937 66 HOH HOH . F 5 HOH A 38 938 137 HOH HOH . F 5 HOH A 39 939 36 HOH HOH . F 5 HOH A 40 940 96 HOH HOH . F 5 HOH A 41 941 86 HOH HOH . F 5 HOH A 42 942 32 HOH HOH . F 5 HOH A 43 943 12 HOH HOH . F 5 HOH A 44 944 55 HOH HOH . F 5 HOH A 45 945 153 HOH HOH . F 5 HOH A 46 946 2 HOH HOH . F 5 HOH A 47 947 196 HOH HOH . F 5 HOH A 48 948 26 HOH HOH . F 5 HOH A 49 949 21 HOH HOH . F 5 HOH A 50 950 54 HOH HOH . F 5 HOH A 51 951 28 HOH HOH . F 5 HOH A 52 952 29 HOH HOH . F 5 HOH A 53 953 49 HOH HOH . F 5 HOH A 54 954 40 HOH HOH . F 5 HOH A 55 955 9 HOH HOH . F 5 HOH A 56 956 68 HOH HOH . F 5 HOH A 57 957 175 HOH HOH . F 5 HOH A 58 958 6 HOH HOH . F 5 HOH A 59 959 104 HOH HOH . F 5 HOH A 60 960 85 HOH HOH . F 5 HOH A 61 961 22 HOH HOH . F 5 HOH A 62 962 145 HOH HOH . F 5 HOH A 63 963 50 HOH HOH . F 5 HOH A 64 964 5 HOH HOH . F 5 HOH A 65 965 10 HOH HOH . F 5 HOH A 66 966 62 HOH HOH . F 5 HOH A 67 967 7 HOH HOH . F 5 HOH A 68 968 136 HOH HOH . F 5 HOH A 69 969 38 HOH HOH . F 5 HOH A 70 970 15 HOH HOH . F 5 HOH A 71 971 138 HOH HOH . F 5 HOH A 72 972 158 HOH HOH . F 5 HOH A 73 973 64 HOH HOH . F 5 HOH A 74 974 20 HOH HOH . F 5 HOH A 75 975 52 HOH HOH . F 5 HOH A 76 976 91 HOH HOH . F 5 HOH A 77 977 14 HOH HOH . F 5 HOH A 78 978 102 HOH HOH . F 5 HOH A 79 979 154 HOH HOH . F 5 HOH A 80 980 1 HOH HOH . F 5 HOH A 81 981 110 HOH HOH . F 5 HOH A 82 982 8 HOH HOH . F 5 HOH A 83 983 3 HOH HOH . F 5 HOH A 84 984 92 HOH HOH . F 5 HOH A 85 985 59 HOH HOH . F 5 HOH A 86 986 188 HOH HOH . F 5 HOH A 87 987 74 HOH HOH . F 5 HOH A 88 988 43 HOH HOH . F 5 HOH A 89 989 116 HOH HOH . F 5 HOH A 90 990 67 HOH HOH . F 5 HOH A 91 991 4 HOH HOH . F 5 HOH A 92 992 142 HOH HOH . F 5 HOH A 93 993 75 HOH HOH . F 5 HOH A 94 994 183 HOH HOH . F 5 HOH A 95 995 71 HOH HOH . F 5 HOH A 96 996 24 HOH HOH . F 5 HOH A 97 997 57 HOH HOH . F 5 HOH A 98 998 16 HOH HOH . F 5 HOH A 99 999 101 HOH HOH . F 5 HOH A 100 1000 34 HOH HOH . F 5 HOH A 101 1001 60 HOH HOH . F 5 HOH A 102 1002 30 HOH HOH . F 5 HOH A 103 1003 70 HOH HOH . F 5 HOH A 104 1004 81 HOH HOH . F 5 HOH A 105 1005 84 HOH HOH . F 5 HOH A 106 1006 11 HOH HOH . F 5 HOH A 107 1007 130 HOH HOH . F 5 HOH A 108 1008 156 HOH HOH . F 5 HOH A 109 1009 159 HOH HOH . F 5 HOH A 110 1010 121 HOH HOH . F 5 HOH A 111 1011 95 HOH HOH . F 5 HOH A 112 1012 174 HOH HOH . F 5 HOH A 113 1013 172 HOH HOH . F 5 HOH A 114 1014 148 HOH HOH . F 5 HOH A 115 1015 129 HOH HOH . F 5 HOH A 116 1016 42 HOH HOH . F 5 HOH A 117 1017 41 HOH HOH . F 5 HOH A 118 1018 18 HOH HOH . F 5 HOH A 119 1019 187 HOH HOH . F 5 HOH A 120 1020 44 HOH HOH . F 5 HOH A 121 1021 106 HOH HOH . F 5 HOH A 122 1022 171 HOH HOH . F 5 HOH A 123 1023 58 HOH HOH . F 5 HOH A 124 1024 118 HOH HOH . F 5 HOH A 125 1025 123 HOH HOH . F 5 HOH A 126 1026 124 HOH HOH . F 5 HOH A 127 1027 90 HOH HOH . F 5 HOH A 128 1028 103 HOH HOH . F 5 HOH A 129 1029 35 HOH HOH . F 5 HOH A 130 1030 190 HOH HOH . F 5 HOH A 131 1031 69 HOH HOH . F 5 HOH A 132 1032 195 HOH HOH . F 5 HOH A 133 1033 108 HOH HOH . F 5 HOH A 134 1034 162 HOH HOH . F 5 HOH A 135 1035 179 HOH HOH . F 5 HOH A 136 1036 105 HOH HOH . F 5 HOH A 137 1037 163 HOH HOH . F 5 HOH A 138 1038 46 HOH HOH . F 5 HOH A 139 1039 209 HOH HOH . F 5 HOH A 140 1040 144 HOH HOH . F 5 HOH A 141 1041 48 HOH HOH . F 5 HOH A 142 1042 161 HOH HOH . F 5 HOH A 143 1043 93 HOH HOH . F 5 HOH A 144 1044 125 HOH HOH . F 5 HOH A 145 1045 147 HOH HOH . F 5 HOH A 146 1046 56 HOH HOH . F 5 HOH A 147 1047 141 HOH HOH . F 5 HOH A 148 1048 178 HOH HOH . F 5 HOH A 149 1049 173 HOH HOH . F 5 HOH A 150 1050 33 HOH HOH . F 5 HOH A 151 1051 176 HOH HOH . F 5 HOH A 152 1052 180 HOH HOH . F 5 HOH A 153 1053 65 HOH HOH . F 5 HOH A 154 1054 193 HOH HOH . F 5 HOH A 155 1055 202 HOH HOH . F 5 HOH A 156 1056 184 HOH HOH . F 5 HOH A 157 1057 170 HOH HOH . F 5 HOH A 158 1058 140 HOH HOH . F 5 HOH A 159 1059 77 HOH HOH . F 5 HOH A 160 1060 82 HOH HOH . F 5 HOH A 161 1061 99 HOH HOH . F 5 HOH A 162 1062 164 HOH HOH . F 5 HOH A 163 1063 194 HOH HOH . F 5 HOH A 164 1064 25 HOH HOH . F 5 HOH A 165 1065 206 HOH HOH . F 5 HOH A 166 1066 146 HOH HOH . F 5 HOH A 167 1067 78 HOH HOH . F 5 HOH A 168 1068 80 HOH HOH . F 5 HOH A 169 1069 73 HOH HOH . F 5 HOH A 170 1070 97 HOH HOH . F 5 HOH A 171 1071 135 HOH HOH . F 5 HOH A 172 1072 98 HOH HOH . F 5 HOH A 173 1073 131 HOH HOH . F 5 HOH A 174 1074 205 HOH HOH . F 5 HOH A 175 1075 155 HOH HOH . F 5 HOH A 176 1076 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HCD . . . E 4 0.189 -35.358 -4.901 1 23.81 ? C1 HCD 804 A 1 HETATM 2 O O1 HCD . . . E 4 3.448 -34.143 -6.369 1 28.49 ? O1 HCD 804 A 1 HETATM 3 C C2 HCD . . . E 4 1.652 -34.959 -4.962 1 25.99 ? C2 HCD 804 A 1 HETATM 4 O O2 HCD . . . E 4 -8.124 -34.714 -4.075 1 25.25 ? O2 HCD 804 A 1 HETATM 5 C C3 HCD . . . E 4 2.078 -34.615 -6.346 1 25.62 ? C3 HCD 804 A 1 HETATM 6 C C4 HCD . . . E 4 1.252 -33.483 -6.897 1 24.91 ? C4 HCD 804 A 1 HETATM 7 C C5 HCD . . . E 4 -0.244 -33.783 -6.791 1 23.32 ? C5 HCD 804 A 1 HETATM 8 C C6 HCD . . . E 4 -1.11 -33.713 -8.055 1 23.31 ? C6 HCD 804 A 1 HETATM 9 C C7 HCD . . . E 4 -2.596 -33.945 -7.965 1 23.05 ? C7 HCD 804 A 1 HETATM 10 C C8 HCD . . . E 4 -3.149 -34.247 -6.391 1 23.04 ? C8 HCD 804 A 1 HETATM 11 C C9 HCD . . . E 4 -2.352 -35.019 -5.704 1 22.99 ? C9 HCD 804 A 1 HETATM 12 C C10 HCD . . . E 4 -0.756 -34.314 -5.509 1 23.22 ? C10 HCD 804 A 1 HETATM 13 C C11 HCD . . . E 4 -2.863 -35.386 -4.534 1 21.85 ? C11 HCD 804 A 1 HETATM 14 C C12 HCD . . . E 4 -4.55 -35.877 -4.676 1 24.08 ? C12 HCD 804 A 1 HETATM 15 C C13 HCD . . . E 4 -5.236 -35.245 -5.323 1 25.39 ? C13 HCD 804 A 1 HETATM 16 C C14 HCD . . . E 4 -4.62 -34.86 -6.535 1 23.46 ? C14 HCD 804 A 1 HETATM 17 C C15 HCD . . . E 4 -5.685 -34.107 -7.317 1 24.47 ? C15 HCD 804 A 1 HETATM 18 C C16 HCD . . . E 4 -6.822 -34.696 -6.934 1 24.98 ? C16 HCD 804 A 1 HETATM 19 C C17 HCD . . . E 4 -6.408 -35.667 -5.762 1 24.82 ? C17 HCD 804 A 1 HETATM 20 C C18 HCD . . . E 4 -5.402 -33.85 -4.494 1 24.45 ? C18 HCD 804 A 1 HETATM 21 C C19 HCD . . . E 4 -0.87 -33.099 -4.512 1 23.49 ? C19 HCD 804 A 1 HETATM 22 C C20 HCD . . . E 4 -7.704 -35.899 -4.702 1 24.46 ? C20 HCD 804 A 1 HETATM 23 C C21 HCD . . . E 4 -7.388 -36.905 -3.643 1 24.67 ? C21 HCD 804 A 1 HETATM 24 C C22 HCD . . . E 4 -8.949 -36.33 -5.453 1 25.56 ? C22 HCD 804 A 1 HETATM 25 C C23 HCD . . . E 4 -8.835 -37.743 -6.186 1 26.2 ? C23 HCD 804 A 1 HETATM 26 C C24 HCD . . . E 4 -10.134 -37.909 -7.081 1 27.52 ? C24 HCD 804 A 1 HETATM 27 C C25 HCD . . . E 4 -9.989 -39.123 -7.988 1 31.51 ? C25 HCD 804 A 1 HETATM 28 C C26 HCD . . . E 4 -10.264 -40.432 -7.132 1 34.96 ? C26 HCD 804 A 1 HETATM 29 C C27 HCD . . . E 4 -11.034 -39.054 -9.131 1 32.61 ? C27 HCD 804 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 456 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #