data_6T50 # _model_server_result.job_id D-XIY6MbKN2vtDLZUsMsiQ _model_server_result.datetime_utc '2024-11-17 23:37:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 6T50 # _exptl.entry_id 6T50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6T50 _cell.length_a 108.325 _cell.length_b 108.325 _cell.length_c 108.509 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6T50 _atom_sites.fract_transf_matrix[1][1] 0.009231 _atom_sites.fract_transf_matrix[1][2] 0.00533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HC3 A 1 601 601 HC3 25H . C 3 MJE A 1 602 701 MJE GLK . D 4 GOL A 1 603 801 GOL GOL . E 5 HOH A 1 701 59 HOH HOH . E 5 HOH A 2 702 58 HOH HOH . E 5 HOH A 3 703 69 HOH HOH . E 5 HOH A 4 704 51 HOH HOH . E 5 HOH A 5 705 80 HOH HOH . E 5 HOH A 6 706 66 HOH HOH . E 5 HOH A 7 707 22 HOH HOH . E 5 HOH A 8 708 49 HOH HOH . E 5 HOH A 9 709 32 HOH HOH . E 5 HOH A 10 710 39 HOH HOH . E 5 HOH A 11 711 54 HOH HOH . E 5 HOH A 12 712 12 HOH HOH . E 5 HOH A 13 713 57 HOH HOH . E 5 HOH A 14 714 6 HOH HOH . E 5 HOH A 15 715 41 HOH HOH . E 5 HOH A 16 716 38 HOH HOH . E 5 HOH A 17 717 7 HOH HOH . E 5 HOH A 18 718 4 HOH HOH . E 5 HOH A 19 719 27 HOH HOH . E 5 HOH A 20 720 21 HOH HOH . E 5 HOH A 21 721 43 HOH HOH . E 5 HOH A 22 722 3 HOH HOH . E 5 HOH A 23 723 2 HOH HOH . E 5 HOH A 24 724 8 HOH HOH . E 5 HOH A 25 725 36 HOH HOH . E 5 HOH A 26 726 63 HOH HOH . E 5 HOH A 27 727 47 HOH HOH . E 5 HOH A 28 728 5 HOH HOH . E 5 HOH A 29 729 9 HOH HOH . E 5 HOH A 30 730 23 HOH HOH . E 5 HOH A 31 731 35 HOH HOH . E 5 HOH A 32 732 16 HOH HOH . E 5 HOH A 33 733 84 HOH HOH . E 5 HOH A 34 734 31 HOH HOH . E 5 HOH A 35 735 72 HOH HOH . E 5 HOH A 36 736 78 HOH HOH . E 5 HOH A 37 737 28 HOH HOH . E 5 HOH A 38 738 90 HOH HOH . E 5 HOH A 39 739 1 HOH HOH . E 5 HOH A 40 740 81 HOH HOH . E 5 HOH A 41 741 17 HOH HOH . E 5 HOH A 42 742 13 HOH HOH . E 5 HOH A 43 743 26 HOH HOH . E 5 HOH A 44 744 60 HOH HOH . E 5 HOH A 45 745 24 HOH HOH . E 5 HOH A 46 746 40 HOH HOH . E 5 HOH A 47 747 62 HOH HOH . E 5 HOH A 48 748 37 HOH HOH . E 5 HOH A 49 749 64 HOH HOH . E 5 HOH A 50 750 76 HOH HOH . E 5 HOH A 51 751 79 HOH HOH . E 5 HOH A 52 752 19 HOH HOH . E 5 HOH A 53 753 68 HOH HOH . E 5 HOH A 54 754 11 HOH HOH . E 5 HOH A 55 755 18 HOH HOH . E 5 HOH A 56 756 34 HOH HOH . E 5 HOH A 57 757 15 HOH HOH . E 5 HOH A 58 758 29 HOH HOH . E 5 HOH A 59 759 20 HOH HOH . E 5 HOH A 60 760 86 HOH HOH . E 5 HOH A 61 761 92 HOH HOH . E 5 HOH A 62 762 10 HOH HOH . E 5 HOH A 63 763 14 HOH HOH . E 5 HOH A 64 764 61 HOH HOH . E 5 HOH A 65 765 42 HOH HOH . E 5 HOH A 66 766 33 HOH HOH . E 5 HOH A 67 767 56 HOH HOH . E 5 HOH A 68 768 82 HOH HOH . E 5 HOH A 69 769 25 HOH HOH . E 5 HOH A 70 770 73 HOH HOH . E 5 HOH A 71 771 85 HOH HOH . E 5 HOH A 72 772 50 HOH HOH . E 5 HOH A 73 773 45 HOH HOH . E 5 HOH A 74 774 48 HOH HOH . E 5 HOH A 75 775 71 HOH HOH . E 5 HOH A 76 776 70 HOH HOH . E 5 HOH A 77 777 83 HOH HOH . E 5 HOH A 78 778 67 HOH HOH . E 5 HOH A 79 779 65 HOH HOH . E 5 HOH A 80 780 30 HOH HOH . E 5 HOH A 81 781 44 HOH HOH . E 5 HOH A 82 782 75 HOH HOH . E 5 HOH A 83 783 74 HOH HOH . E 5 HOH A 84 784 91 HOH HOH . E 5 HOH A 85 785 88 HOH HOH . E 5 HOH A 86 786 55 HOH HOH . E 5 HOH A 87 787 77 HOH HOH . E 5 HOH A 88 788 52 HOH HOH . E 5 HOH A 89 789 87 HOH HOH . E 5 HOH A 90 790 53 HOH HOH . E 5 HOH A 91 791 46 HOH HOH . E 5 HOH A 92 792 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 0.577 -30.33 -8.556 1 59.18 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . D 4 0.819 -29.078 -7.934 1 58.59 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . D 4 0.844 -30.249 -10.039 1 61.14 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . D 4 2.199 -29.894 -10.288 1 57.53 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . D 4 -0.068 -29.268 -10.732 1 56.5 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . D 4 -0.318 -28.147 -9.906 1 53.69 ? O3 GOL 603 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #