data_6T54 # _model_server_result.job_id dZZzyueiuxVYkxs8A5oKvQ _model_server_result.datetime_utc '2024-10-11 03:13:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 6T54 # _exptl.entry_id 6T54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.574 _cell.angle_gamma 90 _cell.entry_id 6T54 _cell.length_a 70.291 _cell.length_b 71.383 _cell.length_c 72.751 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 I C1 NAG . H NAG 306 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 C C GLU 8 I GLU 524 1_555 C N TYS 9 I TYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C TYS 9 I TYS 525 1_555 C N LEU 10 I LEU 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 E NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 E NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc3 B O ARG 233 H ARG 221 1_555 D NA NA . H NA 301 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc4 B O LYS 236 H LYS 224 1_555 D NA NA . H NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 D NA NA . H NA 301 1_555 L O HOH . H HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 D NA NA . H NA 301 1_555 L O HOH . H HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc7 D NA NA . H NA 301 1_555 L O HOH . H HOH 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc8 D NA NA . H NA 301 1_555 L O HOH . H HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc9 E NA NA . H NA 302 1_555 L O HOH . H HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.963 ? metalc ? metalc10 E NA NA . H NA 302 1_555 L O HOH . H HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 6T54 _atom_sites.fract_transf_matrix[1][1] 0.014227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014009 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 301 1 NA NA . E 4 NA H 1 302 2 NA NA . F 5 DMS H 1 303 1 DMS DMS . G 5 DMS H 1 304 2 DMS DMS . H 6 GOL H 1 305 201 GOL GOL . I 7 NAG H 1 306 1 NAG NAG . J 8 MJK H 1 307 1 MJK 13J . K 9 HOH L 1 101 149 HOH HOH . K 9 HOH L 2 102 37 HOH HOH . K 9 HOH L 3 103 76 HOH HOH . K 9 HOH L 4 104 86 HOH HOH . K 9 HOH L 5 105 19 HOH HOH . K 9 HOH L 6 106 100 HOH HOH . K 9 HOH L 7 107 95 HOH HOH . K 9 HOH L 8 108 166 HOH HOH . K 9 HOH L 9 109 84 HOH HOH . K 9 HOH L 10 110 18 HOH HOH . K 9 HOH L 11 111 170 HOH HOH . K 9 HOH L 12 112 20 HOH HOH . K 9 HOH L 13 113 190 HOH HOH . K 9 HOH L 14 114 108 HOH HOH . K 9 HOH L 15 115 81 HOH HOH . K 9 HOH L 16 116 36 HOH HOH . K 9 HOH L 17 117 192 HOH HOH . K 9 HOH L 18 118 145 HOH HOH . K 9 HOH L 19 119 12 HOH HOH . K 9 HOH L 20 120 119 HOH HOH . K 9 HOH L 21 121 34 HOH HOH . K 9 HOH L 22 122 179 HOH HOH . K 9 HOH L 23 123 214 HOH HOH . K 9 HOH L 24 124 213 HOH HOH . K 9 HOH L 25 125 57 HOH HOH . K 9 HOH L 26 126 39 HOH HOH . K 9 HOH L 27 127 136 HOH HOH . K 9 HOH L 28 128 182 HOH HOH . K 9 HOH L 29 129 126 HOH HOH . K 9 HOH L 30 130 241 HOH HOH . K 9 HOH L 31 131 38 HOH HOH . K 9 HOH L 32 132 226 HOH HOH . L 9 HOH H 1 401 253 HOH HOH . L 9 HOH H 2 402 186 HOH HOH . L 9 HOH H 3 403 247 HOH HOH . L 9 HOH H 4 404 169 HOH HOH . L 9 HOH H 5 405 93 HOH HOH . L 9 HOH H 6 406 204 HOH HOH . L 9 HOH H 7 407 131 HOH HOH . L 9 HOH H 8 408 255 HOH HOH . L 9 HOH H 9 409 113 HOH HOH . L 9 HOH H 10 410 83 HOH HOH . L 9 HOH H 11 411 197 HOH HOH . L 9 HOH H 12 412 80 HOH HOH . L 9 HOH H 13 413 78 HOH HOH . L 9 HOH H 14 414 94 HOH HOH . L 9 HOH H 15 415 151 HOH HOH . L 9 HOH H 16 416 187 HOH HOH . L 9 HOH H 17 417 156 HOH HOH . L 9 HOH H 18 418 158 HOH HOH . L 9 HOH H 19 419 142 HOH HOH . L 9 HOH H 20 420 42 HOH HOH . L 9 HOH H 21 421 171 HOH HOH . L 9 HOH H 22 422 13 HOH HOH . L 9 HOH H 23 423 198 HOH HOH . L 9 HOH H 24 424 107 HOH HOH . L 9 HOH H 25 425 90 HOH HOH . L 9 HOH H 26 426 3 HOH HOH . L 9 HOH H 27 427 138 HOH HOH . L 9 HOH H 28 428 52 HOH HOH . L 9 HOH H 29 429 101 HOH HOH . L 9 HOH H 30 430 174 HOH HOH . L 9 HOH H 31 431 239 HOH HOH . L 9 HOH H 32 432 92 HOH HOH . L 9 HOH H 33 433 97 HOH HOH . L 9 HOH H 34 434 29 HOH HOH . L 9 HOH H 35 435 91 HOH HOH . L 9 HOH H 36 436 105 HOH HOH . L 9 HOH H 37 437 112 HOH HOH . L 9 HOH H 38 438 11 HOH HOH . L 9 HOH H 39 439 143 HOH HOH . L 9 HOH H 40 440 221 HOH HOH . L 9 HOH H 41 441 117 HOH HOH . L 9 HOH H 42 442 127 HOH HOH . L 9 HOH H 43 443 139 HOH HOH . L 9 HOH H 44 444 48 HOH HOH . L 9 HOH H 45 445 50 HOH HOH . L 9 HOH H 46 446 223 HOH HOH . L 9 HOH H 47 447 82 HOH HOH . L 9 HOH H 48 448 23 HOH HOH . L 9 HOH H 49 449 148 HOH HOH . L 9 HOH H 50 450 175 HOH HOH . L 9 HOH H 51 451 30 HOH HOH . L 9 HOH H 52 452 87 HOH HOH . L 9 HOH H 53 453 25 HOH HOH . L 9 HOH H 54 454 28 HOH HOH . L 9 HOH H 55 455 10 HOH HOH . L 9 HOH H 56 456 159 HOH HOH . L 9 HOH H 57 457 66 HOH HOH . L 9 HOH H 58 458 77 HOH HOH . L 9 HOH H 59 459 104 HOH HOH . L 9 HOH H 60 460 74 HOH HOH . L 9 HOH H 61 461 17 HOH HOH . L 9 HOH H 62 462 123 HOH HOH . L 9 HOH H 63 463 146 HOH HOH . L 9 HOH H 64 464 16 HOH HOH . L 9 HOH H 65 465 71 HOH HOH . L 9 HOH H 66 466 33 HOH HOH . L 9 HOH H 67 467 15 HOH HOH . L 9 HOH H 68 468 46 HOH HOH . L 9 HOH H 69 469 155 HOH HOH . L 9 HOH H 70 470 22 HOH HOH . L 9 HOH H 71 471 51 HOH HOH . L 9 HOH H 72 472 114 HOH HOH . L 9 HOH H 73 473 6 HOH HOH . L 9 HOH H 74 474 88 HOH HOH . L 9 HOH H 75 475 120 HOH HOH . L 9 HOH H 76 476 24 HOH HOH . L 9 HOH H 77 477 68 HOH HOH . L 9 HOH H 78 478 4 HOH HOH . L 9 HOH H 79 479 56 HOH HOH . L 9 HOH H 80 480 5 HOH HOH . L 9 HOH H 81 481 225 HOH HOH . L 9 HOH H 82 482 72 HOH HOH . L 9 HOH H 83 483 27 HOH HOH . L 9 HOH H 84 484 75 HOH HOH . L 9 HOH H 85 485 44 HOH HOH . L 9 HOH H 86 486 141 HOH HOH . L 9 HOH H 87 487 32 HOH HOH . L 9 HOH H 88 488 235 HOH HOH . L 9 HOH H 89 489 103 HOH HOH . L 9 HOH H 90 490 173 HOH HOH . L 9 HOH H 91 491 55 HOH HOH . L 9 HOH H 92 492 102 HOH HOH . L 9 HOH H 93 493 79 HOH HOH . L 9 HOH H 94 494 8 HOH HOH . L 9 HOH H 95 495 49 HOH HOH . L 9 HOH H 96 496 26 HOH HOH . L 9 HOH H 97 497 150 HOH HOH . L 9 HOH H 98 498 124 HOH HOH . L 9 HOH H 99 499 191 HOH HOH . L 9 HOH H 100 500 41 HOH HOH . L 9 HOH H 101 501 110 HOH HOH . L 9 HOH H 102 502 115 HOH HOH . L 9 HOH H 103 503 1 HOH HOH . L 9 HOH H 104 504 14 HOH HOH . L 9 HOH H 105 505 231 HOH HOH . L 9 HOH H 106 506 69 HOH HOH . L 9 HOH H 107 507 129 HOH HOH . L 9 HOH H 108 508 144 HOH HOH . L 9 HOH H 109 509 96 HOH HOH . L 9 HOH H 110 510 194 HOH HOH . L 9 HOH H 111 511 227 HOH HOH . L 9 HOH H 112 512 9 HOH HOH . L 9 HOH H 113 513 137 HOH HOH . L 9 HOH H 114 514 152 HOH HOH . L 9 HOH H 115 515 7 HOH HOH . L 9 HOH H 116 516 189 HOH HOH . L 9 HOH H 117 517 205 HOH HOH . L 9 HOH H 118 518 31 HOH HOH . L 9 HOH H 119 519 53 HOH HOH . L 9 HOH H 120 520 118 HOH HOH . L 9 HOH H 121 521 73 HOH HOH . L 9 HOH H 122 522 242 HOH HOH . L 9 HOH H 123 523 21 HOH HOH . L 9 HOH H 124 524 128 HOH HOH . L 9 HOH H 125 525 121 HOH HOH . L 9 HOH H 126 526 125 HOH HOH . L 9 HOH H 127 527 130 HOH HOH . L 9 HOH H 128 528 89 HOH HOH . L 9 HOH H 129 529 140 HOH HOH . L 9 HOH H 130 530 111 HOH HOH . L 9 HOH H 131 531 59 HOH HOH . L 9 HOH H 132 532 2 HOH HOH . L 9 HOH H 133 533 99 HOH HOH . L 9 HOH H 134 534 220 HOH HOH . L 9 HOH H 135 535 177 HOH HOH . L 9 HOH H 136 536 147 HOH HOH . L 9 HOH H 137 537 203 HOH HOH . L 9 HOH H 138 538 122 HOH HOH . L 9 HOH H 139 539 157 HOH HOH . L 9 HOH H 140 540 106 HOH HOH . L 9 HOH H 141 541 132 HOH HOH . L 9 HOH H 142 542 224 HOH HOH . L 9 HOH H 143 543 43 HOH HOH . L 9 HOH H 144 544 85 HOH HOH . L 9 HOH H 145 545 184 HOH HOH . L 9 HOH H 146 546 67 HOH HOH . L 9 HOH H 147 547 153 HOH HOH . L 9 HOH H 148 548 133 HOH HOH . L 9 HOH H 149 549 219 HOH HOH . L 9 HOH H 150 550 185 HOH HOH . L 9 HOH H 151 551 202 HOH HOH . L 9 HOH H 152 552 65 HOH HOH . L 9 HOH H 153 553 109 HOH HOH . L 9 HOH H 154 554 246 HOH HOH . L 9 HOH H 155 555 160 HOH HOH . L 9 HOH H 156 556 47 HOH HOH . L 9 HOH H 157 557 251 HOH HOH . L 9 HOH H 158 558 116 HOH HOH . L 9 HOH H 159 559 193 HOH HOH . L 9 HOH H 160 560 206 HOH HOH . L 9 HOH H 161 561 181 HOH HOH . L 9 HOH H 162 562 70 HOH HOH . L 9 HOH H 163 563 167 HOH HOH . L 9 HOH H 164 564 254 HOH HOH . L 9 HOH H 165 565 233 HOH HOH . L 9 HOH H 166 566 232 HOH HOH . L 9 HOH H 167 567 243 HOH HOH . L 9 HOH H 168 568 200 HOH HOH . L 9 HOH H 169 569 244 HOH HOH . L 9 HOH H 170 570 208 HOH HOH . L 9 HOH H 171 571 162 HOH HOH . L 9 HOH H 172 572 249 HOH HOH . L 9 HOH H 173 573 236 HOH HOH . L 9 HOH H 174 574 228 HOH HOH . L 9 HOH H 175 575 257 HOH HOH . L 9 HOH H 176 576 98 HOH HOH . L 9 HOH H 177 577 256 HOH HOH . L 9 HOH H 178 578 218 HOH HOH . L 9 HOH H 179 579 60 HOH HOH . L 9 HOH H 180 580 135 HOH HOH . L 9 HOH H 181 581 240 HOH HOH . L 9 HOH H 182 582 216 HOH HOH . L 9 HOH H 183 583 248 HOH HOH . L 9 HOH H 184 584 250 HOH HOH . L 9 HOH H 185 585 134 HOH HOH . L 9 HOH H 186 586 63 HOH HOH . L 9 HOH H 187 587 207 HOH HOH . L 9 HOH H 188 588 172 HOH HOH . L 9 HOH H 189 589 183 HOH HOH . M 9 HOH I 1 601 210 HOH HOH . M 9 HOH I 2 602 211 HOH HOH . M 9 HOH I 3 603 180 HOH HOH . M 9 HOH I 4 604 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 5 73.971 -11.786 173.3 0.85 32.88 ? S DMS 304 H 1 HETATM 2 O O DMS . . . G 5 72.507 -12.133 173.272 0.85 26.74 ? O DMS 304 H 1 HETATM 3 C C1 DMS . . . G 5 74.402 -10.739 174.704 0.85 32.12 ? C1 DMS 304 H 1 HETATM 4 C C2 DMS . . . G 5 74.931 -13.258 173.708 0.85 30.46 ? C2 DMS 304 H 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #