data_6T55 # _model_server_result.job_id DugUmwhURYatKR2MRyFM4Q _model_server_result.datetime_utc '2024-11-26 19:57:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 6T55 # _exptl.entry_id 6T55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.175 _cell.angle_gamma 90 _cell.entry_id 6T55 _cell.length_a 70.271 _cell.length_b 71.336 _cell.length_c 72.395 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 I C1 NAG . H NAG 306 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 C C GLU 8 I GLU 525 1_555 C N TYS 9 I TYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 C C TYS 9 I TYS 526 1_555 C N LEU 10 I LEU 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 B O LYS 174 H LYS 169 1_555 E NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc2 B O THR 177 H THR 172 1_555 E NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 B O PHE 215 H PHE 204 1_555 E NA NA . H NA 302 4_758 A ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc4 B O ARG 233 H ARG 221 1_555 D NA NA . H NA 301 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 B O LYS 236 H LYS 224 1_555 D NA NA . H NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc6 D NA NA . H NA 301 1_555 K O HOH . H HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc7 D NA NA . H NA 301 1_555 K O HOH . H HOH 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc8 D NA NA . H NA 301 1_555 K O HOH . H HOH 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc9 D NA NA . H NA 301 1_555 K O HOH . H HOH 581 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc10 E NA NA . H NA 302 1_555 K O HOH . H HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc11 E NA NA . H NA 302 1_555 K O HOH . H HOH 489 4_748 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc12 E NA NA . H NA 302 1_555 K O HOH . H HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6T55 _atom_sites.fract_transf_matrix[1][1] 0.014231 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002554 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014034 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA H 1 301 1 NA NA . E 4 NA H 1 302 2 NA NA . F 5 02N H 1 303 1 02N MBA . G 6 PO4 H 1 304 1 PO4 PO4 . H 7 GOL H 1 305 1 GOL GOL . I 8 NAG H 1 306 1 NAG NAG . J 9 HOH L 1 101 353 HOH HOH . J 9 HOH L 2 102 346 HOH HOH . J 9 HOH L 3 103 223 HOH HOH . J 9 HOH L 4 104 33 HOH HOH . J 9 HOH L 5 105 303 HOH HOH . J 9 HOH L 6 106 37 HOH HOH . J 9 HOH L 7 107 311 HOH HOH . J 9 HOH L 8 108 39 HOH HOH . J 9 HOH L 9 109 313 HOH HOH . J 9 HOH L 10 110 11 HOH HOH . J 9 HOH L 11 111 78 HOH HOH . J 9 HOH L 12 112 45 HOH HOH . J 9 HOH L 13 113 308 HOH HOH . J 9 HOH L 14 114 21 HOH HOH . J 9 HOH L 15 115 307 HOH HOH . J 9 HOH L 16 116 419 HOH HOH . J 9 HOH L 17 117 43 HOH HOH . J 9 HOH L 18 118 318 HOH HOH . J 9 HOH L 19 119 88 HOH HOH . J 9 HOH L 20 120 408 HOH HOH . J 9 HOH L 21 121 75 HOH HOH . J 9 HOH L 22 122 312 HOH HOH . J 9 HOH L 23 123 500 HOH HOH . J 9 HOH L 24 124 288 HOH HOH . J 9 HOH L 25 125 89 HOH HOH . J 9 HOH L 26 126 451 HOH HOH . J 9 HOH L 27 127 410 HOH HOH . J 9 HOH L 28 128 93 HOH HOH . J 9 HOH L 29 129 319 HOH HOH . J 9 HOH L 30 130 458 HOH HOH . J 9 HOH L 31 131 406 HOH HOH . J 9 HOH L 32 132 52 HOH HOH . J 9 HOH L 33 133 474 HOH HOH . J 9 HOH L 34 134 220 HOH HOH . J 9 HOH L 35 135 106 HOH HOH . J 9 HOH L 36 136 53 HOH HOH . J 9 HOH L 37 137 433 HOH HOH . K 9 HOH H 1 401 54 HOH HOH . K 9 HOH H 2 402 378 HOH HOH . K 9 HOH H 3 403 321 HOH HOH . K 9 HOH H 4 404 79 HOH HOH . K 9 HOH H 5 405 397 HOH HOH . K 9 HOH H 6 406 400 HOH HOH . K 9 HOH H 7 407 372 HOH HOH . K 9 HOH H 8 408 90 HOH HOH . K 9 HOH H 9 409 112 HOH HOH . K 9 HOH H 10 410 325 HOH HOH . K 9 HOH H 11 411 338 HOH HOH . K 9 HOH H 12 412 326 HOH HOH . K 9 HOH H 13 413 315 HOH HOH . K 9 HOH H 14 414 331 HOH HOH . K 9 HOH H 15 415 342 HOH HOH . K 9 HOH H 16 416 418 HOH HOH . K 9 HOH H 17 417 430 HOH HOH . K 9 HOH H 18 418 284 HOH HOH . K 9 HOH H 19 419 515 HOH HOH . K 9 HOH H 20 420 57 HOH HOH . K 9 HOH H 21 421 283 HOH HOH . K 9 HOH H 22 422 71 HOH HOH . K 9 HOH H 23 423 335 HOH HOH . K 9 HOH H 24 424 328 HOH HOH . K 9 HOH H 25 425 9 HOH HOH . K 9 HOH H 26 426 41 HOH HOH . K 9 HOH H 27 427 14 HOH HOH . K 9 HOH H 28 428 490 HOH HOH . K 9 HOH H 29 429 292 HOH HOH . K 9 HOH H 30 430 347 HOH HOH . K 9 HOH H 31 431 32 HOH HOH . K 9 HOH H 32 432 364 HOH HOH . K 9 HOH H 33 433 68 HOH HOH . K 9 HOH H 34 434 300 HOH HOH . K 9 HOH H 35 435 363 HOH HOH . K 9 HOH H 36 436 276 HOH HOH . K 9 HOH H 37 437 374 HOH HOH . K 9 HOH H 38 438 24 HOH HOH . K 9 HOH H 39 439 17 HOH HOH . K 9 HOH H 40 440 332 HOH HOH . K 9 HOH H 41 441 30 HOH HOH . K 9 HOH H 42 442 102 HOH HOH . K 9 HOH H 43 443 407 HOH HOH . K 9 HOH H 44 444 298 HOH HOH . K 9 HOH H 45 445 46 HOH HOH . K 9 HOH H 46 446 91 HOH HOH . K 9 HOH H 47 447 367 HOH HOH . K 9 HOH H 48 448 348 HOH HOH . K 9 HOH H 49 449 48 HOH HOH . K 9 HOH H 50 450 390 HOH HOH . K 9 HOH H 51 451 70 HOH HOH . K 9 HOH H 52 452 111 HOH HOH . K 9 HOH H 53 453 356 HOH HOH . K 9 HOH H 54 454 25 HOH HOH . K 9 HOH H 55 455 274 HOH HOH . K 9 HOH H 56 456 324 HOH HOH . K 9 HOH H 57 457 95 HOH HOH . K 9 HOH H 58 458 327 HOH HOH . K 9 HOH H 59 459 62 HOH HOH . K 9 HOH H 60 460 23 HOH HOH . K 9 HOH H 61 461 357 HOH HOH . K 9 HOH H 62 462 38 HOH HOH . K 9 HOH H 63 463 19 HOH HOH . K 9 HOH H 64 464 58 HOH HOH . K 9 HOH H 65 465 278 HOH HOH . K 9 HOH H 66 466 59 HOH HOH . K 9 HOH H 67 467 293 HOH HOH . K 9 HOH H 68 468 16 HOH HOH . K 9 HOH H 69 469 295 HOH HOH . K 9 HOH H 70 470 13 HOH HOH . K 9 HOH H 71 471 305 HOH HOH . K 9 HOH H 72 472 2 HOH HOH . K 9 HOH H 73 473 69 HOH HOH . K 9 HOH H 74 474 370 HOH HOH . K 9 HOH H 75 475 12 HOH HOH . K 9 HOH H 76 476 394 HOH HOH . K 9 HOH H 77 477 207 HOH HOH . K 9 HOH H 78 478 291 HOH HOH . K 9 HOH H 79 479 286 HOH HOH . K 9 HOH H 80 480 359 HOH HOH . K 9 HOH H 81 481 290 HOH HOH . K 9 HOH H 82 482 282 HOH HOH . K 9 HOH H 83 483 492 HOH HOH . K 9 HOH H 84 484 281 HOH HOH . K 9 HOH H 85 485 3 HOH HOH . K 9 HOH H 86 486 8 HOH HOH . K 9 HOH H 87 487 113 HOH HOH . K 9 HOH H 88 488 63 HOH HOH . K 9 HOH H 89 489 5 HOH HOH . K 9 HOH H 90 490 280 HOH HOH . K 9 HOH H 91 491 336 HOH HOH . K 9 HOH H 92 492 103 HOH HOH . K 9 HOH H 93 493 4 HOH HOH . K 9 HOH H 94 494 296 HOH HOH . K 9 HOH H 95 495 345 HOH HOH . K 9 HOH H 96 496 393 HOH HOH . K 9 HOH H 97 497 44 HOH HOH . K 9 HOH H 98 498 56 HOH HOH . K 9 HOH H 99 499 368 HOH HOH . K 9 HOH H 100 500 412 HOH HOH . K 9 HOH H 101 501 22 HOH HOH . K 9 HOH H 102 502 358 HOH HOH . K 9 HOH H 103 503 18 HOH HOH . K 9 HOH H 104 504 301 HOH HOH . K 9 HOH H 105 505 362 HOH HOH . K 9 HOH H 106 506 279 HOH HOH . K 9 HOH H 107 507 96 HOH HOH . K 9 HOH H 108 508 81 HOH HOH . K 9 HOH H 109 509 508 HOH HOH . K 9 HOH H 110 510 277 HOH HOH . K 9 HOH H 111 511 339 HOH HOH . K 9 HOH H 112 512 29 HOH HOH . K 9 HOH H 113 513 7 HOH HOH . K 9 HOH H 114 514 31 HOH HOH . K 9 HOH H 115 515 341 HOH HOH . K 9 HOH H 116 516 26 HOH HOH . K 9 HOH H 117 517 373 HOH HOH . K 9 HOH H 118 518 10 HOH HOH . K 9 HOH H 119 519 323 HOH HOH . K 9 HOH H 120 520 409 HOH HOH . K 9 HOH H 121 521 73 HOH HOH . K 9 HOH H 122 522 72 HOH HOH . K 9 HOH H 123 523 496 HOH HOH . K 9 HOH H 124 524 334 HOH HOH . K 9 HOH H 125 525 366 HOH HOH . K 9 HOH H 126 526 124 HOH HOH . K 9 HOH H 127 527 101 HOH HOH . K 9 HOH H 128 528 55 HOH HOH . K 9 HOH H 129 529 445 HOH HOH . K 9 HOH H 130 530 64 HOH HOH . K 9 HOH H 131 531 131 HOH HOH . K 9 HOH H 132 532 61 HOH HOH . K 9 HOH H 133 533 116 HOH HOH . K 9 HOH H 134 534 421 HOH HOH . K 9 HOH H 135 535 495 HOH HOH . K 9 HOH H 136 536 414 HOH HOH . K 9 HOH H 137 537 285 HOH HOH . K 9 HOH H 138 538 287 HOH HOH . K 9 HOH H 139 539 40 HOH HOH . K 9 HOH H 140 540 42 HOH HOH . K 9 HOH H 141 541 51 HOH HOH . K 9 HOH H 142 542 333 HOH HOH . K 9 HOH H 143 543 343 HOH HOH . K 9 HOH H 144 544 289 HOH HOH . K 9 HOH H 145 545 76 HOH HOH . K 9 HOH H 146 546 294 HOH HOH . K 9 HOH H 147 547 510 HOH HOH . K 9 HOH H 148 548 329 HOH HOH . K 9 HOH H 149 549 74 HOH HOH . K 9 HOH H 150 550 402 HOH HOH . K 9 HOH H 151 551 506 HOH HOH . K 9 HOH H 152 552 92 HOH HOH . K 9 HOH H 153 553 275 HOH HOH . K 9 HOH H 154 554 423 HOH HOH . K 9 HOH H 155 555 86 HOH HOH . K 9 HOH H 156 556 448 HOH HOH . K 9 HOH H 157 557 297 HOH HOH . K 9 HOH H 158 558 376 HOH HOH . K 9 HOH H 159 559 512 HOH HOH . K 9 HOH H 160 560 498 HOH HOH . K 9 HOH H 161 561 273 HOH HOH . K 9 HOH H 162 562 396 HOH HOH . K 9 HOH H 163 563 108 HOH HOH . K 9 HOH H 164 564 502 HOH HOH . K 9 HOH H 165 565 304 HOH HOH . K 9 HOH H 166 566 194 HOH HOH . K 9 HOH H 167 567 85 HOH HOH . K 9 HOH H 168 568 349 HOH HOH . K 9 HOH H 169 569 375 HOH HOH . K 9 HOH H 170 570 494 HOH HOH . K 9 HOH H 171 571 224 HOH HOH . K 9 HOH H 172 572 504 HOH HOH . K 9 HOH H 173 573 382 HOH HOH . K 9 HOH H 174 574 424 HOH HOH . K 9 HOH H 175 575 392 HOH HOH . K 9 HOH H 176 576 36 HOH HOH . K 9 HOH H 177 577 404 HOH HOH . K 9 HOH H 178 578 384 HOH HOH . K 9 HOH H 179 579 369 HOH HOH . K 9 HOH H 180 580 6 HOH HOH . K 9 HOH H 181 581 1 HOH HOH . K 9 HOH H 182 582 499 HOH HOH . K 9 HOH H 183 583 365 HOH HOH . K 9 HOH H 184 584 361 HOH HOH . K 9 HOH H 185 585 505 HOH HOH . K 9 HOH H 186 586 34 HOH HOH . K 9 HOH H 187 587 219 HOH HOH . K 9 HOH H 188 588 513 HOH HOH . K 9 HOH H 189 589 511 HOH HOH . K 9 HOH H 190 590 82 HOH HOH . K 9 HOH H 191 591 422 HOH HOH . K 9 HOH H 192 592 441 HOH HOH . K 9 HOH H 193 593 509 HOH HOH . K 9 HOH H 194 594 480 HOH HOH . K 9 HOH H 195 595 355 HOH HOH . K 9 HOH H 196 596 213 HOH HOH . K 9 HOH H 197 597 316 HOH HOH . K 9 HOH H 198 598 462 HOH HOH . K 9 HOH H 199 599 463 HOH HOH . K 9 HOH H 200 600 383 HOH HOH . K 9 HOH H 201 601 306 HOH HOH . K 9 HOH H 202 602 431 HOH HOH . K 9 HOH H 203 603 387 HOH HOH . K 9 HOH H 204 604 450 HOH HOH . K 9 HOH H 205 605 449 HOH HOH . L 9 HOH I 1 601 104 HOH HOH . L 9 HOH I 2 602 15 HOH HOH . L 9 HOH I 3 603 66 HOH HOH . L 9 HOH I 4 604 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 76.067 _atom_site.Cartn_y -15.845 _atom_site.Cartn_z 109.24 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #