data_6T57
#
_model_server_result.job_id            2m3QWfOEAAFhm6qLKAGLmg 
_model_server_result.datetime_utc      '2024-10-19 21:31:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":304}' 
#
_entry.id    6T57 
#
_exptl.entry_id    6T57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.679 
_cell.angle_gamma         90 
_cell.entry_id            6T57 
_cell.length_a            70.29 
_cell.length_b            71.66 
_cell.length_c            73.245 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
covale ? covale1 B ND2 ASN 53 H ASN 60 1_555 H C1 NAG . H NAG 305 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale2 C C GLU 8 I GLU 524 1_555 C N TYS 9 I TYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 C C TYS 9 I TYS 525 1_555 C N LEU 10 I LEU 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 B O LYS 174 H LYS 169 1_555 G NA NA . H NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc2 B O THR 177 H THR 172 1_555 G NA NA . H NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? 
metalc ? metalc3 B O PHE 215 H PHE 204 1_555 G NA NA . H NA 304 4_556 A ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc4 B O ARG 233 H ARG 221 1_555 F NA NA . H NA 303 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc5 B O LYS 236 H LYS 224 1_555 F NA NA . H NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc6 F NA NA . H NA 303 1_555 L O HOH . H HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc7 F NA NA . H NA 303 1_555 L O HOH . H HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc8 F NA NA . H NA 303 1_555 L O HOH . H HOH 492 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc9 F NA NA . H NA 303 1_555 L O HOH . H HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc10 G NA NA . H NA 304 1_555 L O HOH . H HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc11 G NA NA . H NA 304 1_555 L O HOH . H HOH 506 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6T57 
_atom_sites.fract_transf_matrix[1][1]    0.014227 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002683 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013955 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013893 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 DMS H 1 301 1 DMS DMS . 
E 5 PO4 H 1 302 1 PO4 PO4 . 
F 6 NA H 1 303 1 NA NA . 
G 6 NA H 1 304 2 NA NA . 
H 7 NAG H 1 305 1 NAG NAG . 
I 8 J3I H 1 306 1 J3I 113 . 
J 9 TFA H 1 307 1 TFA TFA . 
K 10 HOH L 1 101 190 HOH HOH . 
K 10 HOH L 2 102 29 HOH HOH . 
K 10 HOH L 3 103 74 HOH HOH . 
K 10 HOH L 4 104 203 HOH HOH . 
K 10 HOH L 5 105 59 HOH HOH . 
K 10 HOH L 6 106 37 HOH HOH . 
K 10 HOH L 7 107 17 HOH HOH . 
K 10 HOH L 8 108 73 HOH HOH . 
K 10 HOH L 9 109 44 HOH HOH . 
K 10 HOH L 10 110 56 HOH HOH . 
K 10 HOH L 11 111 77 HOH HOH . 
K 10 HOH L 12 112 83 HOH HOH . 
K 10 HOH L 13 113 202 HOH HOH . 
K 10 HOH L 14 114 110 HOH HOH . 
L 10 HOH H 1 401 217 HOH HOH . 
L 10 HOH H 2 402 214 HOH HOH . 
L 10 HOH H 3 403 211 HOH HOH . 
L 10 HOH H 4 404 165 HOH HOH . 
L 10 HOH H 5 405 163 HOH HOH . 
L 10 HOH H 6 406 101 HOH HOH . 
L 10 HOH H 7 407 181 HOH HOH . 
L 10 HOH H 8 408 4 HOH HOH . 
L 10 HOH H 9 409 27 HOH HOH . 
L 10 HOH H 10 410 91 HOH HOH . 
L 10 HOH H 11 411 26 HOH HOH . 
L 10 HOH H 12 412 20 HOH HOH . 
L 10 HOH H 13 413 72 HOH HOH . 
L 10 HOH H 14 414 70 HOH HOH . 
L 10 HOH H 15 415 96 HOH HOH . 
L 10 HOH H 16 416 171 HOH HOH . 
L 10 HOH H 17 417 136 HOH HOH . 
L 10 HOH H 18 418 50 HOH HOH . 
L 10 HOH H 19 419 41 HOH HOH . 
L 10 HOH H 20 420 34 HOH HOH . 
L 10 HOH H 21 421 11 HOH HOH . 
L 10 HOH H 22 422 216 HOH HOH . 
L 10 HOH H 23 423 13 HOH HOH . 
L 10 HOH H 24 424 79 HOH HOH . 
L 10 HOH H 25 425 68 HOH HOH . 
L 10 HOH H 26 426 116 HOH HOH . 
L 10 HOH H 27 427 158 HOH HOH . 
L 10 HOH H 28 428 192 HOH HOH . 
L 10 HOH H 29 429 61 HOH HOH . 
L 10 HOH H 30 430 162 HOH HOH . 
L 10 HOH H 31 431 182 HOH HOH . 
L 10 HOH H 32 432 175 HOH HOH . 
L 10 HOH H 33 433 12 HOH HOH . 
L 10 HOH H 34 434 30 HOH HOH . 
L 10 HOH H 35 435 6 HOH HOH . 
L 10 HOH H 36 436 57 HOH HOH . 
L 10 HOH H 37 437 128 HOH HOH . 
L 10 HOH H 38 438 82 HOH HOH . 
L 10 HOH H 39 439 100 HOH HOH . 
L 10 HOH H 40 440 115 HOH HOH . 
L 10 HOH H 41 441 38 HOH HOH . 
L 10 HOH H 42 442 209 HOH HOH . 
L 10 HOH H 43 443 2 HOH HOH . 
L 10 HOH H 44 444 3 HOH HOH . 
L 10 HOH H 45 445 170 HOH HOH . 
L 10 HOH H 46 446 10 HOH HOH . 
L 10 HOH H 47 447 22 HOH HOH . 
L 10 HOH H 48 448 97 HOH HOH . 
L 10 HOH H 49 449 93 HOH HOH . 
L 10 HOH H 50 450 125 HOH HOH . 
L 10 HOH H 51 451 19 HOH HOH . 
L 10 HOH H 52 452 35 HOH HOH . 
L 10 HOH H 53 453 15 HOH HOH . 
L 10 HOH H 54 454 119 HOH HOH . 
L 10 HOH H 55 455 32 HOH HOH . 
L 10 HOH H 56 456 156 HOH HOH . 
L 10 HOH H 57 457 7 HOH HOH . 
L 10 HOH H 58 458 18 HOH HOH . 
L 10 HOH H 59 459 121 HOH HOH . 
L 10 HOH H 60 460 8 HOH HOH . 
L 10 HOH H 61 461 47 HOH HOH . 
L 10 HOH H 62 462 52 HOH HOH . 
L 10 HOH H 63 463 51 HOH HOH . 
L 10 HOH H 64 464 16 HOH HOH . 
L 10 HOH H 65 465 180 HOH HOH . 
L 10 HOH H 66 466 48 HOH HOH . 
L 10 HOH H 67 467 23 HOH HOH . 
L 10 HOH H 68 468 195 HOH HOH . 
L 10 HOH H 69 469 5 HOH HOH . 
L 10 HOH H 70 470 65 HOH HOH . 
L 10 HOH H 71 471 53 HOH HOH . 
L 10 HOH H 72 472 159 HOH HOH . 
L 10 HOH H 73 473 87 HOH HOH . 
L 10 HOH H 74 474 46 HOH HOH . 
L 10 HOH H 75 475 33 HOH HOH . 
L 10 HOH H 76 476 185 HOH HOH . 
L 10 HOH H 77 477 49 HOH HOH . 
L 10 HOH H 78 478 25 HOH HOH . 
L 10 HOH H 79 479 24 HOH HOH . 
L 10 HOH H 80 480 145 HOH HOH . 
L 10 HOH H 81 481 71 HOH HOH . 
L 10 HOH H 82 482 179 HOH HOH . 
L 10 HOH H 83 483 64 HOH HOH . 
L 10 HOH H 84 484 14 HOH HOH . 
L 10 HOH H 85 485 66 HOH HOH . 
L 10 HOH H 86 486 76 HOH HOH . 
L 10 HOH H 87 487 176 HOH HOH . 
L 10 HOH H 88 488 9 HOH HOH . 
L 10 HOH H 89 489 177 HOH HOH . 
L 10 HOH H 90 490 103 HOH HOH . 
L 10 HOH H 91 491 28 HOH HOH . 
L 10 HOH H 92 492 31 HOH HOH . 
L 10 HOH H 93 493 120 HOH HOH . 
L 10 HOH H 94 494 75 HOH HOH . 
L 10 HOH H 95 495 148 HOH HOH . 
L 10 HOH H 96 496 80 HOH HOH . 
L 10 HOH H 97 497 104 HOH HOH . 
L 10 HOH H 98 498 58 HOH HOH . 
L 10 HOH H 99 499 109 HOH HOH . 
L 10 HOH H 100 500 132 HOH HOH . 
L 10 HOH H 101 501 207 HOH HOH . 
L 10 HOH H 102 502 173 HOH HOH . 
L 10 HOH H 103 503 95 HOH HOH . 
L 10 HOH H 104 504 213 HOH HOH . 
L 10 HOH H 105 505 89 HOH HOH . 
L 10 HOH H 106 506 142 HOH HOH . 
L 10 HOH H 107 507 187 HOH HOH . 
L 10 HOH H 108 508 45 HOH HOH . 
L 10 HOH H 109 509 88 HOH HOH . 
L 10 HOH H 110 510 69 HOH HOH . 
L 10 HOH H 111 511 218 HOH HOH . 
L 10 HOH H 112 512 92 HOH HOH . 
L 10 HOH H 113 513 183 HOH HOH . 
L 10 HOH H 114 514 155 HOH HOH . 
L 10 HOH H 115 515 107 HOH HOH . 
L 10 HOH H 116 516 151 HOH HOH . 
L 10 HOH H 117 517 143 HOH HOH . 
L 10 HOH H 118 518 111 HOH HOH . 
L 10 HOH H 119 519 123 HOH HOH . 
L 10 HOH H 120 520 54 HOH HOH . 
L 10 HOH H 121 521 172 HOH HOH . 
L 10 HOH H 122 522 178 HOH HOH . 
L 10 HOH H 123 523 161 HOH HOH . 
L 10 HOH H 124 524 67 HOH HOH . 
L 10 HOH H 125 525 186 HOH HOH . 
L 10 HOH H 126 526 208 HOH HOH . 
L 10 HOH H 127 527 210 HOH HOH . 
L 10 HOH H 128 528 212 HOH HOH . 
L 10 HOH H 129 529 201 HOH HOH . 
L 10 HOH H 130 530 108 HOH HOH . 
L 10 HOH H 131 531 221 HOH HOH . 
L 10 HOH H 132 532 191 HOH HOH . 
L 10 HOH H 133 533 141 HOH HOH . 
L 10 HOH H 134 534 164 HOH HOH . 
L 10 HOH H 135 535 90 HOH HOH . 
L 10 HOH H 136 536 102 HOH HOH . 
L 10 HOH H 137 537 215 HOH HOH . 
L 10 HOH H 138 538 106 HOH HOH . 
L 10 HOH H 139 539 197 HOH HOH . 
M 10 HOH I 1 601 206 HOH HOH . 
M 10 HOH I 2 602 219 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               18.189 
_atom_site.Cartn_y               -15.879 
_atom_site.Cartn_z               38.49 
_atom_site.occupancy             0.49 
_atom_site.B_iso_or_equiv        23.08 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           304 
_atom_site.auth_asym_id          H 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           41 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#