data_6T5E # _model_server_result.job_id tL0i51XkYQnZjCuSlSdiUg _model_server_result.datetime_utc '2025-08-31 08:34:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t5e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 6T5E # _exptl.entry_id 6T5E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T5E _cell.length_a 124.56 _cell.length_b 124.56 _cell.length_c 124.56 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T5E _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_454 -z-1/2,-x,y-1/2 0 0 -1 -1 0 0 0 1 0 -62.28 0 -62.28 3 'crystal symmetry operation' 10_554 -y,z+1/2,-x-1/2 0 -1 0 0 0 1 -1 0 0 0 62.28 -62.28 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 80 A CYS 113 1_555 B CAB HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale2 A SG CYS 83 A CYS 116 1_555 B CAC HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale3 A SG CYS 125 A CYS 158 1_555 C CAB HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale4 A SG CYS 128 A CYS 161 1_555 C CAC HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.808 ? covale ? covale5 A SG CYS 144 A CYS 177 1_555 D CAB HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale6 A SG CYS 147 A CYS 180 1_555 D CAC HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? covale ? covale7 A SG CYS 188 A CYS 221 1_555 E CAB HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale8 A SG CYS 191 A CYS 224 1_555 E CAC HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale9 A SG CYS 199 A CYS 232 1_555 F CAB HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? covale ? covale10 A SG CYS 199 A CYS 232 1_555 F CBB HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? covale ? covale11 A SG CYS 202 A CYS 235 1_555 F CAC HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? covale ? covale12 A SG CYS 219 A CYS 252 1_555 G CAB HEC . A HEC 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? covale ? covale13 A SG CYS 222 A CYS 255 1_555 G CAC HEC . A HEC 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? covale ? covale14 A SG CYS 266 A CYS 299 1_555 H CAB HEC . A HEC 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale15 A SG CYS 269 A CYS 302 1_555 H CAC HEC . A HEC 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? covale ? covale16 A SG CYS 311 A CYS 344 1_555 I CAB HEC . A HEC 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? covale ? covale17 A SG CYS 314 A CYS 347 1_555 I CAC HEC . A HEC 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.804 ? metalc ? metalc1 A NE2 HIS 84 A HIS 117 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc2 A NE2 HIS 100 A HIS 133 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc3 A NE2 HIS 129 A HIS 162 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 A NE2 HIS 133 A HIS 166 1_555 B FE HEC . A HEC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc5 A NE2 HIS 148 A HIS 181 1_555 D FE HEC . A HEC 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc6 A NE2 HIS 163 A HIS 196 1_555 G FE HEC . A HEC 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc7 A NE2 HIS 192 A HIS 225 1_555 E FE HEC . A HEC 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 A NE2 HIS 203 A HIS 236 1_555 F FE HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc9 A NE2 HIS 206 A HIS 239 1_555 C FE HEC . A HEC 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc10 A NE2 HIS 223 A HIS 256 1_555 G FE HEC . A HEC 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc11 A NE2 HIS 239 A HIS 272 1_555 I FE HEC . A HEC 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc12 A NE2 HIS 270 A HIS 303 1_555 H FE HEC . A HEC 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc13 A NE2 HIS 276 A HIS 309 1_555 F FE HEC . A HEC 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc14 A NE2 HIS 315 A HIS 348 1_555 I FE HEC . A HEC 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc15 A NE2 HIS 408 A HIS 441 1_555 H FE HEC . A HEC 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 6T5E _atom_sites.fract_transf_matrix[1][1] 0.008028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 601 601 HEC HEM . C 2 HEC A 1 602 602 HEC HEM . D 2 HEC A 1 603 603 HEC HEM . E 2 HEC A 1 604 604 HEC HEC . F 2 HEC A 1 605 605 HEC HEM . G 2 HEC A 1 606 606 HEC HEM . H 2 HEC A 1 607 607 HEC HEM . I 2 HEC A 1 608 608 HEC HEM . J 3 SO4 A 1 609 1 SO4 SO4 . K 3 SO4 A 1 610 2 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . C 2 -3.845 24.552 -19.01 1 83.91 ? FE HEC 602 A 1 HETATM 2 C CHA HEC . . . C 2 -2.328 22.967 -21.476 1 85.73 ? CHA HEC 602 A 1 HETATM 3 C CHB HEC . . . C 2 -1.862 27.345 -19.479 1 86.48 ? CHB HEC 602 A 1 HETATM 4 C CHC HEC . . . C 2 -5.942 26.47 -16.961 1 84.48 ? CHC HEC 602 A 1 HETATM 5 C CHD HEC . . . C 2 -5.269 21.757 -17.811 1 84.23 ? CHD HEC 602 A 1 HETATM 6 N NA HEC . . . C 2 -2.359 25.07 -20.218 1 85.16 ? NA HEC 602 A 1 HETATM 7 C C1A HEC . . . C 2 -1.904 24.252 -21.223 1 85.99 ? C1A HEC 602 A 1 HETATM 8 C C2A HEC . . . C 2 -0.922 24.949 -21.968 1 86.56 ? C2A HEC 602 A 1 HETATM 9 C C3A HEC . . . C 2 -0.789 26.184 -21.405 1 85.73 ? C3A HEC 602 A 1 HETATM 10 C C4A HEC . . . C 2 -1.686 26.257 -20.315 1 85.99 ? C4A HEC 602 A 1 HETATM 11 C CMA HEC . . . C 2 0.146 27.28 -21.86 1 84.35 ? CMA HEC 602 A 1 HETATM 12 C CAA HEC . . . C 2 -0.147 24.429 -23.163 1 87.54 ? CAA HEC 602 A 1 HETATM 13 C CBA HEC . . . C 2 -1.054 24.185 -24.374 1 90.23 ? CBA HEC 602 A 1 HETATM 14 C CGA HEC . . . C 2 -1.095 25.402 -25.256 1 91.85 ? CGA HEC 602 A 1 HETATM 15 O O1A HEC . . . C 2 -0.087 25.725 -25.921 1 93.89 ? O1A HEC 602 A 1 HETATM 16 O O2A HEC . . . C 2 -2.137 26.089 -25.329 1 93.41 ? O2A HEC 602 A 1 HETATM 17 N NB HEC . . . C 2 -3.894 26.547 -18.34 1 84.62 ? NB HEC 602 A 1 HETATM 18 C C1B HEC . . . C 2 -2.99 27.487 -18.657 1 85.52 ? C1B HEC 602 A 1 HETATM 19 C C2B HEC . . . C 2 -3.329 28.72 -18.029 1 85.23 ? C2B HEC 602 A 1 HETATM 20 C C3B HEC . . . C 2 -4.472 28.502 -17.316 1 84.82 ? C3B HEC 602 A 1 HETATM 21 C C4B HEC . . . C 2 -4.824 27.079 -17.531 1 84.71 ? C4B HEC 602 A 1 HETATM 22 C CMB HEC . . . C 2 -2.573 30.024 -18.131 1 84.68 ? CMB HEC 602 A 1 HETATM 23 C CAB HEC . . . C 2 -5.215 29.48 -16.496 1 85.42 ? CAB HEC 602 A 1 HETATM 24 C CBB HEC . . . C 2 -6.297 30.071 -16.992 1 83.43 ? CBB HEC 602 A 1 HETATM 25 N NC HEC . . . C 2 -5.389 24.194 -17.649 1 83.81 ? NC HEC 602 A 1 HETATM 26 C C1C HEC . . . C 2 -6.047 25.09 -16.854 1 84.21 ? C1C HEC 602 A 1 HETATM 27 C C2C HEC . . . C 2 -6.831 24.392 -15.923 1 84.13 ? C2C HEC 602 A 1 HETATM 28 C C3C HEC . . . C 2 -6.643 23.035 -16.155 1 83.86 ? C3C HEC 602 A 1 HETATM 29 C C4C HEC . . . C 2 -5.727 22.926 -17.252 1 83.5 ? C4C HEC 602 A 1 HETATM 30 C CMC HEC . . . C 2 -7.715 25.011 -14.864 1 84.58 ? CMC HEC 602 A 1 HETATM 31 C CAC HEC . . . C 2 -7.296 21.948 -15.384 1 84.29 ? CAC HEC 602 A 1 HETATM 32 C CBC HEC . . . C 2 -6.666 20.848 -14.985 1 85.13 ? CBC HEC 602 A 1 HETATM 33 N ND HEC . . . C 2 -3.809 22.757 -19.527 1 85.11 ? ND HEC 602 A 1 HETATM 34 C C1D HEC . . . C 2 -4.443 21.73 -18.939 1 85.13 ? C1D HEC 602 A 1 HETATM 35 C C2D HEC . . . C 2 -4.149 20.485 -19.667 1 86.2 ? C2D HEC 602 A 1 HETATM 36 C C3D HEC . . . C 2 -3.327 20.823 -20.687 1 86.22 ? C3D HEC 602 A 1 HETATM 37 C C4D HEC . . . C 2 -3.129 22.273 -20.579 1 85.52 ? C4D HEC 602 A 1 HETATM 38 C CMD HEC . . . C 2 -4.666 19.104 -19.331 1 87.53 ? CMD HEC 602 A 1 HETATM 39 C CAD HEC . . . C 2 -2.726 19.922 -21.744 1 86.93 ? CAD HEC 602 A 1 HETATM 40 C CBD HEC . . . C 2 -1.551 19.128 -21.171 1 88.5 ? CBD HEC 602 A 1 HETATM 41 C CGD HEC . . . C 2 -0.623 18.633 -22.255 1 89.17 ? CGD HEC 602 A 1 HETATM 42 O O1D HEC . . . C 2 -0.274 17.432 -22.261 1 90.83 ? O1D HEC 602 A 1 HETATM 43 O O2D HEC . . . C 2 -0.185 19.41 -23.134 1 88.53 ? O2D HEC 602 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #