data_6T5I # _model_server_result.job_id bMa_xtmmpVhU_P1yTiIUwA _model_server_result.datetime_utc '2025-01-07 19:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":405}' # _entry.id 6T5I # _exptl.entry_id 6T5I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6T5I _cell.length_a 47.951 _cell.length_b 92.667 _cell.length_c 101.447 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 32 A ASN 30 1_555 J NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc2 J NA NA . A NA 308 1_555 Q O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc3 J NA NA . A NA 308 1_555 Q O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc4 B O ASN 32 B ASN 30 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc5 B OE1 GLU 38 B GLU 36 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3 ? metalc ? metalc6 P NA NA . B NA 406 1_555 R O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc7 P NA NA . B NA 406 1_555 R O HOH . B HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 136 n n S C1 DMS sing 137 n n S C2 DMS sing 138 n n C1 H11 DMS sing 139 n n C1 H12 DMS sing 140 n n C1 H13 DMS sing 141 n n C2 H21 DMS sing 142 n n C2 H22 DMS sing 143 n n C2 H23 DMS sing 144 n n # _atom_sites.entry_id 6T5I _atom_sites.fract_transf_matrix[1][1] 0.020855 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 9XK A 1 301 301 9XK 9XK . D 3 DMS A 1 302 401 DMS DMS . E 3 DMS A 1 303 501 DMS DMS . F 3 DMS A 1 304 601 DMS DMS . G 3 DMS A 1 305 701 DMS DMS . H 3 DMS A 1 306 801 DMS DMS . I 3 DMS A 1 307 901 DMS DMS . J 4 NA A 1 308 1 NA NA . K 3 DMS B 1 401 401 DMS DMS . L 3 DMS B 1 402 501 DMS DMS . M 3 DMS B 1 403 601 DMS DMS . N 3 DMS B 1 404 701 DMS DMS . O 3 DMS B 1 405 801 DMS DMS . P 4 NA B 1 406 2 NA NA . Q 5 HOH A 1 401 27 HOH HOH . Q 5 HOH A 2 402 81 HOH HOH . Q 5 HOH A 3 403 101 HOH HOH . Q 5 HOH A 4 404 58 HOH HOH . Q 5 HOH A 5 405 76 HOH HOH . Q 5 HOH A 6 406 64 HOH HOH . Q 5 HOH A 7 407 97 HOH HOH . Q 5 HOH A 8 408 75 HOH HOH . Q 5 HOH A 9 409 33 HOH HOH . Q 5 HOH A 10 410 19 HOH HOH . Q 5 HOH A 11 411 100 HOH HOH . Q 5 HOH A 12 412 83 HOH HOH . Q 5 HOH A 13 413 45 HOH HOH . Q 5 HOH A 14 414 4 HOH HOH . Q 5 HOH A 15 415 20 HOH HOH . Q 5 HOH A 16 416 80 HOH HOH . Q 5 HOH A 17 417 56 HOH HOH . Q 5 HOH A 18 418 16 HOH HOH . Q 5 HOH A 19 419 3 HOH HOH . Q 5 HOH A 20 420 87 HOH HOH . Q 5 HOH A 21 421 70 HOH HOH . Q 5 HOH A 22 422 69 HOH HOH . Q 5 HOH A 23 423 21 HOH HOH . Q 5 HOH A 24 424 90 HOH HOH . Q 5 HOH A 25 425 14 HOH HOH . Q 5 HOH A 26 426 12 HOH HOH . Q 5 HOH A 27 427 98 HOH HOH . Q 5 HOH A 28 428 2 HOH HOH . Q 5 HOH A 29 429 48 HOH HOH . Q 5 HOH A 30 430 17 HOH HOH . Q 5 HOH A 31 431 65 HOH HOH . Q 5 HOH A 32 432 46 HOH HOH . Q 5 HOH A 33 433 96 HOH HOH . Q 5 HOH A 34 434 57 HOH HOH . Q 5 HOH A 35 435 63 HOH HOH . Q 5 HOH A 36 436 85 HOH HOH . Q 5 HOH A 37 437 40 HOH HOH . Q 5 HOH A 38 438 84 HOH HOH . Q 5 HOH A 39 439 72 HOH HOH . Q 5 HOH A 40 440 36 HOH HOH . Q 5 HOH A 41 441 38 HOH HOH . Q 5 HOH A 42 442 35 HOH HOH . Q 5 HOH A 43 443 89 HOH HOH . Q 5 HOH A 44 444 55 HOH HOH . Q 5 HOH A 45 445 78 HOH HOH . Q 5 HOH A 46 446 59 HOH HOH . Q 5 HOH A 47 447 88 HOH HOH . Q 5 HOH A 48 448 68 HOH HOH . Q 5 HOH A 49 449 50 HOH HOH . Q 5 HOH A 50 450 24 HOH HOH . Q 5 HOH A 51 451 99 HOH HOH . Q 5 HOH A 52 452 77 HOH HOH . Q 5 HOH A 53 453 95 HOH HOH . Q 5 HOH A 54 454 54 HOH HOH . Q 5 HOH A 55 455 62 HOH HOH . Q 5 HOH A 56 456 28 HOH HOH . Q 5 HOH A 57 457 74 HOH HOH . Q 5 HOH A 58 458 49 HOH HOH . R 5 HOH B 1 501 37 HOH HOH . R 5 HOH B 2 502 32 HOH HOH . R 5 HOH B 3 503 52 HOH HOH . R 5 HOH B 4 504 47 HOH HOH . R 5 HOH B 5 505 39 HOH HOH . R 5 HOH B 6 506 92 HOH HOH . R 5 HOH B 7 507 82 HOH HOH . R 5 HOH B 8 508 7 HOH HOH . R 5 HOH B 9 509 23 HOH HOH . R 5 HOH B 10 510 94 HOH HOH . R 5 HOH B 11 511 1 HOH HOH . R 5 HOH B 12 512 73 HOH HOH . R 5 HOH B 13 513 8 HOH HOH . R 5 HOH B 14 514 43 HOH HOH . R 5 HOH B 15 515 61 HOH HOH . R 5 HOH B 16 516 26 HOH HOH . R 5 HOH B 17 517 91 HOH HOH . R 5 HOH B 18 518 53 HOH HOH . R 5 HOH B 19 519 41 HOH HOH . R 5 HOH B 20 520 66 HOH HOH . R 5 HOH B 21 521 30 HOH HOH . R 5 HOH B 22 522 9 HOH HOH . R 5 HOH B 23 523 51 HOH HOH . R 5 HOH B 24 524 6 HOH HOH . R 5 HOH B 25 525 11 HOH HOH . R 5 HOH B 26 526 34 HOH HOH . R 5 HOH B 27 527 15 HOH HOH . R 5 HOH B 28 528 42 HOH HOH . R 5 HOH B 29 529 79 HOH HOH . R 5 HOH B 30 530 10 HOH HOH . R 5 HOH B 31 531 5 HOH HOH . R 5 HOH B 32 532 71 HOH HOH . R 5 HOH B 33 533 22 HOH HOH . R 5 HOH B 34 534 31 HOH HOH . R 5 HOH B 35 535 60 HOH HOH . R 5 HOH B 36 536 86 HOH HOH . R 5 HOH B 37 537 93 HOH HOH . R 5 HOH B 38 538 67 HOH HOH . R 5 HOH B 39 539 18 HOH HOH . R 5 HOH B 40 540 25 HOH HOH . R 5 HOH B 41 541 13 HOH HOH . R 5 HOH B 42 542 29 HOH HOH . R 5 HOH B 43 543 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . O 3 -7.974 -16.545 -30.216 1 92.54 ? S DMS 405 B 1 HETATM 2 O O DMS . . . O 3 -6.83 -17.482 -30.461 1 69.28 ? O DMS 405 B 1 HETATM 3 C C1 DMS . . . O 3 -9.53 -17.474 -30.142 1 71.39 ? C1 DMS 405 B 1 HETATM 4 C C2 DMS . . . O 3 -7.903 -15.918 -28.516 1 73.31 ? C2 DMS 405 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #