data_6T6D # _model_server_result.job_id iMm91yD8smCotxOAGtzJzA _model_server_result.datetime_utc '2024-11-26 21:01:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6t6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 6T6D # _exptl.entry_id 6T6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methoxy-4-[4-methyl-5-(4-piperazin-1-ylphenyl)pyridin-3-yl]benzamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.429 _cell.angle_gamma 90 _cell.entry_id 6T6D _cell.length_a 198.091 _cell.length_b 101.882 _cell.length_c 84.271 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6T6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,T 1 1 B,I,J,K,L,U 2 1 C,M,N,O,P,V 3 1 D,Q,R,S,W 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 M N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 395 1_555 B SG CYS 197 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 C SG CYS 197 C CYS 395 1_555 D SG CYS 197 D CYS 395 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C24 H26 N4 O2' _chem_comp.formula_weight 402.489 _chem_comp.id MM8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-methoxy-4-[4-methyl-5-(4-piperazin-1-ylphenyl)pyridin-3-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O30 C28 MM8 doub 237 n n C28 N29 MM8 sing 238 n n C28 C27 MM8 sing 239 n n C26 C27 MM8 doub 240 n y C26 C25 MM8 sing 241 n y C27 C03 MM8 sing 242 n y C25 C05 MM8 doub 243 n y C24 C23 MM8 sing 244 n n C03 O02 MM8 sing 245 n n C03 C04 MM8 doub 246 n y C05 C04 MM8 sing 247 n y C05 C06 MM8 sing 248 n n C13 C12 MM8 doub 249 n y C13 C14 MM8 sing 250 n y C12 C11 MM8 sing 251 n y C17 C16 MM8 sing 252 n n C17 N18 MM8 sing 253 n n O02 C01 MM8 sing 254 n n C23 C06 MM8 doub 255 n y C23 C10 MM8 sing 256 n y C06 C07 MM8 sing 257 n y C16 N15 MM8 sing 258 n n N15 C14 MM8 sing 259 n n N15 C20 MM8 sing 260 n n C10 C11 MM8 sing 261 n n C10 C09 MM8 doub 262 n y C14 C21 MM8 doub 263 n y C11 C22 MM8 doub 264 n y C07 N08 MM8 doub 265 n y N18 C19 MM8 sing 266 n n C19 C20 MM8 sing 267 n n C09 N08 MM8 sing 268 n y C21 C22 MM8 sing 269 n y C01 H012 MM8 sing 270 n n C01 H013 MM8 sing 271 n n C01 H011 MM8 sing 272 n n C04 H041 MM8 sing 273 n n C07 H071 MM8 sing 274 n n C09 H091 MM8 sing 275 n n C12 H121 MM8 sing 276 n n C13 H131 MM8 sing 277 n n C16 H162 MM8 sing 278 n n C16 H161 MM8 sing 279 n n C17 H171 MM8 sing 280 n n C17 H172 MM8 sing 281 n n C19 H191 MM8 sing 282 n n C19 H192 MM8 sing 283 n n C20 H201 MM8 sing 284 n n C20 H202 MM8 sing 285 n n C21 H211 MM8 sing 286 n n C22 H221 MM8 sing 287 n n C24 H241 MM8 sing 288 n n C24 H243 MM8 sing 289 n n C24 H242 MM8 sing 290 n n C25 H251 MM8 sing 291 n n C26 H261 MM8 sing 292 n n N18 H181 MM8 sing 293 n n N29 H291 MM8 sing 294 n n N29 H292 MM8 sing 295 n n # _atom_sites.entry_id 6T6D _atom_sites.fract_transf_matrix[1][1] 0.005048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001981 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MM8 A 1 501 501 MM8 149 . F 3 SO4 A 1 502 601 SO4 SO4 . G 3 SO4 A 1 503 701 SO4 SO4 . H 3 SO4 A 1 504 801 SO4 SO4 . I 2 MM8 B 1 501 501 MM8 149 . J 3 SO4 B 1 502 601 SO4 SO4 . K 3 SO4 B 1 503 701 SO4 SO4 . L 3 SO4 B 1 504 801 SO4 SO4 . M 2 MM8 C 1 501 501 MM8 149 . N 3 SO4 C 1 502 601 SO4 SO4 . O 3 SO4 C 1 503 701 SO4 SO4 . P 3 SO4 C 1 504 801 SO4 SO4 . Q 2 MM8 D 1 501 501 MM8 149 . R 3 SO4 D 1 502 601 SO4 SO4 . S 3 SO4 D 1 503 701 SO4 SO4 . T 4 HOH A 1 601 27 HOH HOH . T 4 HOH A 2 602 25 HOH HOH . T 4 HOH A 3 603 1 HOH HOH . T 4 HOH A 4 604 8 HOH HOH . T 4 HOH A 5 605 10 HOH HOH . T 4 HOH A 6 606 43 HOH HOH . T 4 HOH A 7 607 20 HOH HOH . T 4 HOH A 8 608 22 HOH HOH . T 4 HOH A 9 609 26 HOH HOH . T 4 HOH A 10 610 16 HOH HOH . T 4 HOH A 11 611 5 HOH HOH . T 4 HOH A 12 612 24 HOH HOH . T 4 HOH A 13 613 44 HOH HOH . T 4 HOH A 14 614 42 HOH HOH . T 4 HOH A 15 615 39 HOH HOH . T 4 HOH A 16 616 30 HOH HOH . U 4 HOH B 1 601 28 HOH HOH . U 4 HOH B 2 602 7 HOH HOH . U 4 HOH B 3 603 9 HOH HOH . U 4 HOH B 4 604 14 HOH HOH . V 4 HOH C 1 601 17 HOH HOH . V 4 HOH C 2 602 6 HOH HOH . V 4 HOH C 3 603 11 HOH HOH . V 4 HOH C 4 604 37 HOH HOH . W 4 HOH D 1 601 2 HOH HOH . W 4 HOH D 2 602 19 HOH HOH . W 4 HOH D 3 603 40 HOH HOH . W 4 HOH D 4 604 21 HOH HOH . W 4 HOH D 5 605 41 HOH HOH . W 4 HOH D 6 606 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 MM8 . . . I 2 25.376 -7.289 -13.456 1 66.81 ? C01 MM8 501 B 1 HETATM 2 C C03 MM8 . . . I 2 26.409 -8.744 -11.842 1 70.58 ? C03 MM8 501 B 1 HETATM 3 C C04 MM8 . . . I 2 26.473 -9.836 -12.723 1 71.78 ? C04 MM8 501 B 1 HETATM 4 C C05 MM8 . . . I 2 26.577 -11.156 -12.216 1 73.15 ? C05 MM8 501 B 1 HETATM 5 C C06 MM8 . . . I 2 26.652 -12.297 -13.066 1 67.87 ? C06 MM8 501 B 1 HETATM 6 C C07 MM8 . . . I 2 27.668 -12.386 -14.001 1 73.25 ? C07 MM8 501 B 1 HETATM 7 C C09 MM8 . . . I 2 26.956 -14.461 -14.761 1 70.08 ? C09 MM8 501 B 1 HETATM 8 C C10 MM8 . . . I 2 25.908 -14.471 -13.87 1 66.85 ? C10 MM8 501 B 1 HETATM 9 C C11 MM8 . . . I 2 25.053 -15.615 -13.871 1 71.41 ? C11 MM8 501 B 1 HETATM 10 C C12 MM8 . . . I 2 24.47 -16.083 -15.059 1 77.38 ? C12 MM8 501 B 1 HETATM 11 C C13 MM8 . . . I 2 23.638 -17.221 -15.039 1 77.18 ? C13 MM8 501 B 1 HETATM 12 C C14 MM8 . . . I 2 23.395 -17.9 -13.826 1 85.41 ? C14 MM8 501 B 1 HETATM 13 C C16 MM8 . . . I 2 21.083 -19.03 -13.357 1 100.52 ? C16 MM8 501 B 1 HETATM 14 C C17 MM8 . . . I 2 20.572 -20.378 -12.837 1 99.39 ? C17 MM8 501 B 1 HETATM 15 C C19 MM8 . . . I 2 22.088 -21.533 -14.251 1 99.05 ? C19 MM8 501 B 1 HETATM 16 C C20 MM8 . . . I 2 22.639 -20.205 -14.789 1 91.44 ? C20 MM8 501 B 1 HETATM 17 C C21 MM8 . . . I 2 23.979 -17.441 -12.645 1 82.83 ? C21 MM8 501 B 1 HETATM 18 C C22 MM8 . . . I 2 24.817 -16.306 -12.668 1 71.02 ? C22 MM8 501 B 1 HETATM 19 C C23 MM8 . . . I 2 25.736 -13.366 -12.988 1 67.01 ? C23 MM8 501 B 1 HETATM 20 C C24 MM8 . . . I 2 24.599 -13.33 -11.985 1 64.69 ? C24 MM8 501 B 1 HETATM 21 C C25 MM8 . . . I 2 26.643 -11.351 -10.829 1 74.74 ? C25 MM8 501 B 1 HETATM 22 C C26 MM8 . . . I 2 26.578 -10.262 -9.949 1 66.44 ? C26 MM8 501 B 1 HETATM 23 C C27 MM8 . . . I 2 26.459 -8.951 -10.455 1 71.26 ? C27 MM8 501 B 1 HETATM 24 C C28 MM8 . . . I 2 26.397 -7.774 -9.475 1 69.42 ? C28 MM8 501 B 1 HETATM 25 N N08 MM8 . . . I 2 27.809 -13.435 -14.818 1 72.97 ? N08 MM8 501 B 1 HETATM 26 N N15 MM8 . . . I 2 22.519 -19.107 -13.783 1 90.31 ? N15 MM8 501 B 1 HETATM 27 N N18 MM8 . . . I 2 20.746 -21.423 -13.781 1 103.74 ? N18 MM8 501 B 1 HETATM 28 N N29 MM8 . . . I 2 26.898 -6.472 -9.853 1 71.47 ? N29 MM8 501 B 1 HETATM 29 O O02 MM8 . . . I 2 26.292 -7.402 -12.367 1 66.21 ? O02 MM8 501 B 1 HETATM 30 O O30 MM8 . . . I 2 25.943 -7.93 -8.401 1 72.92 ? O30 MM8 501 B 1 HETATM 31 H H012 MM8 . . . I 2 25.135 -6.388 -13.569 1 80.06 ? H012 MM8 501 B 1 HETATM 32 H H013 MM8 . . . I 2 24.608 -7.797 -13.273 1 80.06 ? H013 MM8 501 B 1 HETATM 33 H H011 MM8 . . . I 2 25.782 -7.606 -14.241 1 80.06 ? H011 MM8 501 B 1 HETATM 34 H H041 MM8 . . . I 2 26.448 -9.692 -13.64 1 86.02 ? H041 MM8 501 B 1 HETATM 35 H H071 MM8 . . . I 2 28.278 -11.687 -14.065 1 87.78 ? H071 MM8 501 B 1 HETATM 36 H H091 MM8 . . . I 2 27.071 -15.182 -15.335 1 83.98 ? H091 MM8 501 B 1 HETATM 37 H H121 MM8 . . . I 2 24.632 -15.642 -15.86 1 92.74 ? H121 MM8 501 B 1 HETATM 38 H H131 MM8 . . . I 2 23.25 -17.525 -15.826 1 92.5 ? H131 MM8 501 B 1 HETATM 39 H H162 MM8 . . . I 2 21 -18.389 -12.676 1 120.51 ? H162 MM8 501 B 1 HETATM 40 H H161 MM8 . . . I 2 20.56 -18.768 -14.092 1 120.51 ? H161 MM8 501 B 1 HETATM 41 H H171 MM8 . . . I 2 19.658 -20.3 -12.638 1 119.15 ? H171 MM8 501 B 1 HETATM 42 H H172 MM8 . . . I 2 21.04 -20.598 -12.053 1 119.15 ? H172 MM8 501 B 1 HETATM 43 H H191 MM8 . . . I 2 22.116 -22.171 -14.939 1 118.74 ? H191 MM8 501 B 1 HETATM 44 H H192 MM8 . . . I 2 22.633 -21.82 -13.543 1 118.74 ? H192 MM8 501 B 1 HETATM 45 H H201 MM8 . . . I 2 23.544 -20.317 -15.012 1 109.61 ? H201 MM8 501 B 1 HETATM 46 H H202 MM8 . . . I 2 22.159 -19.965 -15.56 1 109.61 ? H202 MM8 501 B 1 HETATM 47 H H211 MM8 . . . I 2 23.818 -17.883 -11.844 1 99.28 ? H211 MM8 501 B 1 HETATM 48 H H221 MM8 . . . I 2 25.215 -16.012 -11.882 1 85.11 ? H221 MM8 501 B 1 HETATM 49 H H241 MM8 . . . I 2 24.298 -12.446 -11.886 1 77.5 ? H241 MM8 501 B 1 HETATM 50 H H243 MM8 . . . I 2 24.902 -13.652 -11.157 1 77.5 ? H243 MM8 501 B 1 HETATM 51 H H242 MM8 . . . I 2 23.894 -13.868 -12.292 1 77.5 ? H242 MM8 501 B 1 HETATM 52 H H251 MM8 . . . I 2 26.732 -12.211 -10.489 1 89.57 ? H251 MM8 501 B 1 HETATM 53 H H261 MM8 . . . I 2 26.612 -10.404 -9.032 1 79.61 ? H261 MM8 501 B 1 HETATM 54 H H181 MM8 . . . I 2 20.214 -21.294 -14.455 1 124.37 ? H181 MM8 501 B 1 HETATM 55 H H291 MM8 . . . I 2 26.86 -5.82 -9.294 1 85.65 ? H291 MM8 501 B 1 HETATM 56 H H292 MM8 . . . I 2 27.233 -6.349 -10.635 1 85.65 ? H292 MM8 501 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 56 #