data_6T6D
#
_model_server_result.job_id            GzWMCcyvvW7kfZexJY0N1g 
_model_server_result.datetime_utc      '2024-10-11 00:30:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":501}' 
#
_entry.id    6T6D 
#
_exptl.entry_id    6T6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.489 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-methoxy-4-[4-methyl-5-(4-piperazin-1-ylphenyl)pyridin-3-yl]benzamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.429 
_cell.angle_gamma         90 
_cell.entry_id            6T6D 
_cell.length_a            198.091 
_cell.length_b            101.882 
_cell.length_c            84.271 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,T 1 1 
B,I,J,K,L,U 2 1 
C,M,N,O,P,V 3 1 
D,Q,R,S,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 M N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 197 A CYS 395 1_555 B SG CYS 197 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 197 C CYS 395 1_555 D SG CYS 197 D CYS 395 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C24 H26 N4 O2' 
_chem_comp.formula_weight    402.489 
_chem_comp.id                MM8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-methoxy-4-[4-methyl-5-(4-piperazin-1-ylphenyl)pyridin-3-yl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O30 C28 MM8 doub 237 n n 
C28 N29 MM8 sing 238 n n 
C28 C27 MM8 sing 239 n n 
C26 C27 MM8 doub 240 n y 
C26 C25 MM8 sing 241 n y 
C27 C03 MM8 sing 242 n y 
C25 C05 MM8 doub 243 n y 
C24 C23 MM8 sing 244 n n 
C03 O02 MM8 sing 245 n n 
C03 C04 MM8 doub 246 n y 
C05 C04 MM8 sing 247 n y 
C05 C06 MM8 sing 248 n n 
C13 C12 MM8 doub 249 n y 
C13 C14 MM8 sing 250 n y 
C12 C11 MM8 sing 251 n y 
C17 C16 MM8 sing 252 n n 
C17 N18 MM8 sing 253 n n 
O02 C01 MM8 sing 254 n n 
C23 C06 MM8 doub 255 n y 
C23 C10 MM8 sing 256 n y 
C06 C07 MM8 sing 257 n y 
C16 N15 MM8 sing 258 n n 
N15 C14 MM8 sing 259 n n 
N15 C20 MM8 sing 260 n n 
C10 C11 MM8 sing 261 n n 
C10 C09 MM8 doub 262 n y 
C14 C21 MM8 doub 263 n y 
C11 C22 MM8 doub 264 n y 
C07 N08 MM8 doub 265 n y 
N18 C19 MM8 sing 266 n n 
C19 C20 MM8 sing 267 n n 
C09 N08 MM8 sing 268 n y 
C21 C22 MM8 sing 269 n y 
C01 H012 MM8 sing 270 n n 
C01 H013 MM8 sing 271 n n 
C01 H011 MM8 sing 272 n n 
C04 H041 MM8 sing 273 n n 
C07 H071 MM8 sing 274 n n 
C09 H091 MM8 sing 275 n n 
C12 H121 MM8 sing 276 n n 
C13 H131 MM8 sing 277 n n 
C16 H162 MM8 sing 278 n n 
C16 H161 MM8 sing 279 n n 
C17 H171 MM8 sing 280 n n 
C17 H172 MM8 sing 281 n n 
C19 H191 MM8 sing 282 n n 
C19 H192 MM8 sing 283 n n 
C20 H201 MM8 sing 284 n n 
C20 H202 MM8 sing 285 n n 
C21 H211 MM8 sing 286 n n 
C22 H221 MM8 sing 287 n n 
C24 H241 MM8 sing 288 n n 
C24 H243 MM8 sing 289 n n 
C24 H242 MM8 sing 290 n n 
C25 H251 MM8 sing 291 n n 
C26 H261 MM8 sing 292 n n 
N18 H181 MM8 sing 293 n n 
N29 H291 MM8 sing 294 n n 
N29 H292 MM8 sing 295 n n 
#
_atom_sites.entry_id                     6T6D 
_atom_sites.fract_transf_matrix[1][1]    0.005048 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001981 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009815 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MM8 A 1 501 501 MM8 149 . 
F 3 SO4 A 1 502 601 SO4 SO4 . 
G 3 SO4 A 1 503 701 SO4 SO4 . 
H 3 SO4 A 1 504 801 SO4 SO4 . 
I 2 MM8 B 1 501 501 MM8 149 . 
J 3 SO4 B 1 502 601 SO4 SO4 . 
K 3 SO4 B 1 503 701 SO4 SO4 . 
L 3 SO4 B 1 504 801 SO4 SO4 . 
M 2 MM8 C 1 501 501 MM8 149 . 
N 3 SO4 C 1 502 601 SO4 SO4 . 
O 3 SO4 C 1 503 701 SO4 SO4 . 
P 3 SO4 C 1 504 801 SO4 SO4 . 
Q 2 MM8 D 1 501 501 MM8 149 . 
R 3 SO4 D 1 502 601 SO4 SO4 . 
S 3 SO4 D 1 503 701 SO4 SO4 . 
T 4 HOH A 1 601 27 HOH HOH . 
T 4 HOH A 2 602 25 HOH HOH . 
T 4 HOH A 3 603 1 HOH HOH . 
T 4 HOH A 4 604 8 HOH HOH . 
T 4 HOH A 5 605 10 HOH HOH . 
T 4 HOH A 6 606 43 HOH HOH . 
T 4 HOH A 7 607 20 HOH HOH . 
T 4 HOH A 8 608 22 HOH HOH . 
T 4 HOH A 9 609 26 HOH HOH . 
T 4 HOH A 10 610 16 HOH HOH . 
T 4 HOH A 11 611 5 HOH HOH . 
T 4 HOH A 12 612 24 HOH HOH . 
T 4 HOH A 13 613 44 HOH HOH . 
T 4 HOH A 14 614 42 HOH HOH . 
T 4 HOH A 15 615 39 HOH HOH . 
T 4 HOH A 16 616 30 HOH HOH . 
U 4 HOH B 1 601 28 HOH HOH . 
U 4 HOH B 2 602 7 HOH HOH . 
U 4 HOH B 3 603 9 HOH HOH . 
U 4 HOH B 4 604 14 HOH HOH . 
V 4 HOH C 1 601 17 HOH HOH . 
V 4 HOH C 2 602 6 HOH HOH . 
V 4 HOH C 3 603 11 HOH HOH . 
V 4 HOH C 4 604 37 HOH HOH . 
W 4 HOH D 1 601 2 HOH HOH . 
W 4 HOH D 2 602 19 HOH HOH . 
W 4 HOH D 3 603 40 HOH HOH . 
W 4 HOH D 4 604 21 HOH HOH . 
W 4 HOH D 5 605 41 HOH HOH . 
W 4 HOH D 6 606 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 MM8 . . . M 2 79.104 -28.589 12.759 1 67.51 ? C01 MM8 501 C 1 
HETATM 2 C C03 MM8 . . . M 2 78.781 -27.083 10.892 1 57.52 ? C03 MM8 501 C 1 
HETATM 3 C C04 MM8 . . . M 2 79.35 -26.049 11.653 1 58.71 ? C04 MM8 501 C 1 
HETATM 4 C C05 MM8 . . . M 2 79.264 -24.709 11.207 1 53.75 ? C05 MM8 501 C 1 
HETATM 5 C C06 MM8 . . . M 2 79.818 -23.633 11.953 1 50.44 ? C06 MM8 501 C 1 
HETATM 6 C C07 MM8 . . . M 2 81.154 -23.629 12.303 1 55.31 ? C07 MM8 501 C 1 
HETATM 7 C C09 MM8 . . . M 2 80.98 -21.578 13.384 1 56.94 ? C09 MM8 501 C 1 
HETATM 8 C C10 MM8 . . . M 2 79.641 -21.481 13.08 1 49.77 ? C10 MM8 501 C 1 
HETATM 9 C C11 MM8 . . . M 2 78.927 -20.33 13.539 1 52.89 ? C11 MM8 501 C 1 
HETATM 10 C C12 MM8 . . . M 2 78.058 -19.619 12.695 1 56.34 ? C12 MM8 501 C 1 
HETATM 11 C C13 MM8 . . . M 2 77.353 -18.5 13.168 1 63.66 ? C13 MM8 501 C 1 
HETATM 12 C C14 MM8 . . . M 2 77.535 -18.06 14.493 1 67.95 ? C14 MM8 501 C 1 
HETATM 13 C C16 MM8 . . . M 2 75.749 -16.182 14.184 1 61.58 ? C16 MM8 501 C 1 
HETATM 14 C C17 MM8 . . . M 2 75.479 -14.753 14.673 1 76.23 ? C17 MM8 501 C 1 
HETATM 15 C C19 MM8 . . . M 2 76.057 -15.361 16.885 1 74.14 ? C19 MM8 501 C 1 
HETATM 16 C C20 MM8 . . . M 2 76.359 -16.794 16.428 1 77.9 ? C20 MM8 501 C 1 
HETATM 17 C C21 MM8 . . . M 2 78.41 -18.754 15.333 1 68.61 ? C21 MM8 501 C 1 
HETATM 18 C C22 MM8 . . . M 2 79.109 -19.887 14.859 1 67.09 ? C22 MM8 501 C 1 
HETATM 19 C C23 MM8 . . . M 2 79.024 -22.54 12.356 1 56.18 ? C23 MM8 501 C 1 
HETATM 20 C C24 MM8 . . . M 2 77.548 -22.501 12.005 1 60.01 ? C24 MM8 501 C 1 
HETATM 21 C C25 MM8 . . . M 2 78.631 -24.43 9.986 1 61.05 ? C25 MM8 501 C 1 
HETATM 22 C C26 MM8 . . . M 2 78.06 -25.457 9.226 1 57.77 ? C26 MM8 501 C 1 
HETATM 23 C C27 MM8 . . . M 2 78.138 -26.792 9.676 1 63.28 ? C27 MM8 501 C 1 
HETATM 24 C C28 MM8 . . . M 2 77.502 -27.886 8.812 1 60.73 ? C28 MM8 501 C 1 
HETATM 25 N N08 MM8 . . . M 2 81.711 -22.626 12.994 1 61.39 ? N08 MM8 501 C 1 
HETATM 26 N N15 MM8 . . . M 2 76.8 -16.866 15.004 1 69.5 ? N15 MM8 501 C 1 
HETATM 27 N N18 MM8 . . . M 2 75.116 -14.7 16.043 1 75.19 ? N18 MM8 501 C 1 
HETATM 28 N N29 MM8 . . . M 2 78.019 -29.233 8.795 1 65.24 ? N29 MM8 501 C 1 
HETATM 29 O O02 MM8 . . . M 2 78.865 -28.45 11.357 1 60.13 ? O02 MM8 501 C 1 
HETATM 30 O O30 MM8 . . . M 2 76.567 -27.617 8.153 1 57.98 ? O30 MM8 501 C 1 
HETATM 31 H H012 MM8 . . . M 2 78.939 -29.476 13.018 1 80.89 ? H012 MM8 501 C 1 
HETATM 32 H H013 MM8 . . . M 2 78.533 -28.013 13.233 1 80.89 ? H013 MM8 501 C 1 
HETATM 33 H H011 MM8 . . . M 2 79.997 -28.368 12.948 1 80.89 ? H011 MM8 501 C 1 
HETATM 34 H H041 MM8 . . . M 2 79.783 -26.245 12.452 1 70.34 ? H041 MM8 501 C 1 
HETATM 35 H H071 MM8 . . . M 2 81.686 -24.347 12.05 1 66.25 ? H071 MM8 501 C 1 
HETATM 36 H H091 MM8 . . . M 2 81.384 -20.898 13.871 1 68.21 ? H091 MM8 501 C 1 
HETATM 37 H H121 MM8 . . . M 2 77.947 -19.892 11.814 1 67.49 ? H121 MM8 501 C 1 
HETATM 38 H H131 MM8 . . . M 2 76.766 -18.05 12.606 1 76.27 ? H131 MM8 501 C 1 
HETATM 39 H H162 MM8 . . . M 2 76.034 -16.149 13.29 1 73.78 ? H162 MM8 501 C 1 
HETATM 40 H H161 MM8 . . . M 2 74.952 -16.677 14.237 1 73.78 ? H161 MM8 501 C 1 
HETATM 41 H H171 MM8 . . . M 2 74.781 -14.387 14.162 1 91.36 ? H171 MM8 501 C 1 
HETATM 42 H H172 MM8 . . . M 2 76.255 -14.24 14.547 1 91.36 ? H172 MM8 501 C 1 
HETATM 43 H H191 MM8 . . . M 2 75.713 -15.389 17.758 1 88.85 ? H191 MM8 501 C 1 
HETATM 44 H H192 MM8 . . . M 2 76.858 -14.87 16.885 1 88.85 ? H192 MM8 501 C 1 
HETATM 45 H H201 MM8 . . . M 2 77.039 -17.147 16.972 1 93.36 ? H201 MM8 501 C 1 
HETATM 46 H H202 MM8 . . . M 2 75.583 -17.313 16.53 1 93.36 ? H202 MM8 501 C 1 
HETATM 47 H H211 MM8 . . . M 2 78.533 -18.469 16.208 1 82.22 ? H211 MM8 501 C 1 
HETATM 48 H H221 MM8 . . . M 2 79.691 -20.341 15.423 1 80.39 ? H221 MM8 501 C 1 
HETATM 49 H H241 MM8 . . . M 2 77.202 -23.374 12.016 1 71.89 ? H241 MM8 501 C 1 
HETATM 50 H H243 MM8 . . . M 2 77.44 -22.132 11.149 1 71.89 ? H243 MM8 501 C 1 
HETATM 51 H H242 MM8 . . . M 2 77.091 -21.975 12.633 1 71.89 ? H242 MM8 501 C 1 
HETATM 52 H H251 MM8 . . . M 2 78.591 -23.555 9.679 1 73.14 ? H251 MM8 501 C 1 
HETATM 53 H H261 MM8 . . . M 2 77.631 -25.261 8.426 1 69.21 ? H261 MM8 501 C 1 
HETATM 54 H H181 MM8 . . . M 2 74.331 -15.054 16.15 1 90.11 ? H181 MM8 501 C 1 
HETATM 55 H H291 MM8 . . . M 2 77.644 -29.827 8.299 1 78.17 ? H291 MM8 501 C 1 
HETATM 56 H H292 MM8 . . . M 2 78.7 -29.442 9.276 1 78.17 ? H292 MM8 501 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           56 
#