data_6T6D
#
_model_server_result.job_id            OR65GNPZfGbnVFUc4mXERQ 
_model_server_result.datetime_utc      '2024-10-11 00:30:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6t6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":501}' 
#
_entry.id    6T6D 
#
_exptl.entry_id    6T6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              402.489 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-methoxy-4-[4-methyl-5-(4-piperazin-1-ylphenyl)pyridin-3-yl]benzamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.429 
_cell.angle_gamma         90 
_cell.entry_id            6T6D 
_cell.length_a            198.091 
_cell.length_b            101.882 
_cell.length_c            84.271 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6T6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,T 1 1 
B,I,J,K,L,U 2 1 
C,M,N,O,P,V 3 1 
D,Q,R,S,W 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 I N N 
? 2 M N N 
? 2 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 197 A CYS 395 1_555 B SG CYS 197 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 C SG CYS 197 C CYS 395 1_555 D SG CYS 197 D CYS 395 1_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C24 H26 N4 O2' 
_chem_comp.formula_weight    402.489 
_chem_comp.id                MM8 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-methoxy-4-[4-methyl-5-(4-piperazin-1-ylphenyl)pyridin-3-yl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O30 C28 MM8 doub 237 n n 
C28 N29 MM8 sing 238 n n 
C28 C27 MM8 sing 239 n n 
C26 C27 MM8 doub 240 n y 
C26 C25 MM8 sing 241 n y 
C27 C03 MM8 sing 242 n y 
C25 C05 MM8 doub 243 n y 
C24 C23 MM8 sing 244 n n 
C03 O02 MM8 sing 245 n n 
C03 C04 MM8 doub 246 n y 
C05 C04 MM8 sing 247 n y 
C05 C06 MM8 sing 248 n n 
C13 C12 MM8 doub 249 n y 
C13 C14 MM8 sing 250 n y 
C12 C11 MM8 sing 251 n y 
C17 C16 MM8 sing 252 n n 
C17 N18 MM8 sing 253 n n 
O02 C01 MM8 sing 254 n n 
C23 C06 MM8 doub 255 n y 
C23 C10 MM8 sing 256 n y 
C06 C07 MM8 sing 257 n y 
C16 N15 MM8 sing 258 n n 
N15 C14 MM8 sing 259 n n 
N15 C20 MM8 sing 260 n n 
C10 C11 MM8 sing 261 n n 
C10 C09 MM8 doub 262 n y 
C14 C21 MM8 doub 263 n y 
C11 C22 MM8 doub 264 n y 
C07 N08 MM8 doub 265 n y 
N18 C19 MM8 sing 266 n n 
C19 C20 MM8 sing 267 n n 
C09 N08 MM8 sing 268 n y 
C21 C22 MM8 sing 269 n y 
C01 H012 MM8 sing 270 n n 
C01 H013 MM8 sing 271 n n 
C01 H011 MM8 sing 272 n n 
C04 H041 MM8 sing 273 n n 
C07 H071 MM8 sing 274 n n 
C09 H091 MM8 sing 275 n n 
C12 H121 MM8 sing 276 n n 
C13 H131 MM8 sing 277 n n 
C16 H162 MM8 sing 278 n n 
C16 H161 MM8 sing 279 n n 
C17 H171 MM8 sing 280 n n 
C17 H172 MM8 sing 281 n n 
C19 H191 MM8 sing 282 n n 
C19 H192 MM8 sing 283 n n 
C20 H201 MM8 sing 284 n n 
C20 H202 MM8 sing 285 n n 
C21 H211 MM8 sing 286 n n 
C22 H221 MM8 sing 287 n n 
C24 H241 MM8 sing 288 n n 
C24 H243 MM8 sing 289 n n 
C24 H242 MM8 sing 290 n n 
C25 H251 MM8 sing 291 n n 
C26 H261 MM8 sing 292 n n 
N18 H181 MM8 sing 293 n n 
N29 H291 MM8 sing 294 n n 
N29 H292 MM8 sing 295 n n 
#
_atom_sites.entry_id                     6T6D 
_atom_sites.fract_transf_matrix[1][1]    0.005048 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001981 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009815 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012748 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MM8 A 1 501 501 MM8 149 . 
F 3 SO4 A 1 502 601 SO4 SO4 . 
G 3 SO4 A 1 503 701 SO4 SO4 . 
H 3 SO4 A 1 504 801 SO4 SO4 . 
I 2 MM8 B 1 501 501 MM8 149 . 
J 3 SO4 B 1 502 601 SO4 SO4 . 
K 3 SO4 B 1 503 701 SO4 SO4 . 
L 3 SO4 B 1 504 801 SO4 SO4 . 
M 2 MM8 C 1 501 501 MM8 149 . 
N 3 SO4 C 1 502 601 SO4 SO4 . 
O 3 SO4 C 1 503 701 SO4 SO4 . 
P 3 SO4 C 1 504 801 SO4 SO4 . 
Q 2 MM8 D 1 501 501 MM8 149 . 
R 3 SO4 D 1 502 601 SO4 SO4 . 
S 3 SO4 D 1 503 701 SO4 SO4 . 
T 4 HOH A 1 601 27 HOH HOH . 
T 4 HOH A 2 602 25 HOH HOH . 
T 4 HOH A 3 603 1 HOH HOH . 
T 4 HOH A 4 604 8 HOH HOH . 
T 4 HOH A 5 605 10 HOH HOH . 
T 4 HOH A 6 606 43 HOH HOH . 
T 4 HOH A 7 607 20 HOH HOH . 
T 4 HOH A 8 608 22 HOH HOH . 
T 4 HOH A 9 609 26 HOH HOH . 
T 4 HOH A 10 610 16 HOH HOH . 
T 4 HOH A 11 611 5 HOH HOH . 
T 4 HOH A 12 612 24 HOH HOH . 
T 4 HOH A 13 613 44 HOH HOH . 
T 4 HOH A 14 614 42 HOH HOH . 
T 4 HOH A 15 615 39 HOH HOH . 
T 4 HOH A 16 616 30 HOH HOH . 
U 4 HOH B 1 601 28 HOH HOH . 
U 4 HOH B 2 602 7 HOH HOH . 
U 4 HOH B 3 603 9 HOH HOH . 
U 4 HOH B 4 604 14 HOH HOH . 
V 4 HOH C 1 601 17 HOH HOH . 
V 4 HOH C 2 602 6 HOH HOH . 
V 4 HOH C 3 603 11 HOH HOH . 
V 4 HOH C 4 604 37 HOH HOH . 
W 4 HOH D 1 601 2 HOH HOH . 
W 4 HOH D 2 602 19 HOH HOH . 
W 4 HOH D 3 603 40 HOH HOH . 
W 4 HOH D 4 604 21 HOH HOH . 
W 4 HOH D 5 605 41 HOH HOH . 
W 4 HOH D 6 606 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 MM8 . . . Q 2 46.416 -39.1 28.278 1 61.6 ? C01 MM8 501 D 1 
HETATM 2 C C03 MM8 . . . Q 2 48.368 -39.149 29.733 1 60.88 ? C03 MM8 501 D 1 
HETATM 3 C C04 MM8 . . . Q 2 49.171 -38.762 28.649 1 55.92 ? C04 MM8 501 D 1 
HETATM 4 C C05 MM8 . . . Q 2 50.565 -38.574 28.832 1 62.9 ? C05 MM8 501 D 1 
HETATM 5 C C06 MM8 . . . Q 2 51.414 -38.172 27.759 1 58.37 ? C06 MM8 501 D 1 
HETATM 6 C C07 MM8 . . . Q 2 51.077 -37.047 27.032 1 56.72 ? C07 MM8 501 D 1 
HETATM 7 C C09 MM8 . . . Q 2 52.946 -37.228 25.67 1 63.15 ? C09 MM8 501 D 1 
HETATM 8 C C10 MM8 . . . Q 2 53.385 -38.35 26.331 1 61.15 ? C10 MM8 501 D 1 
HETATM 9 C C11 MM8 . . . Q 2 54.604 -38.947 25.869 1 68.36 ? C11 MM8 501 D 1 
HETATM 10 C C12 MM8 . . . Q 2 55.543 -39.478 26.768 1 67.49 ? C12 MM8 501 D 1 
HETATM 11 C C13 MM8 . . . Q 2 56.73 -40.067 26.309 1 69.3 ? C13 MM8 501 D 1 
HETATM 12 C C14 MM8 . . . Q 2 57.02 -40.1 24.932 1 70.48 ? C14 MM8 501 D 1 
HETATM 13 C C16 MM8 . . . Q 2 59.017 -41.712 25.32 1 82.06 ? C16 MM8 501 D 1 
HETATM 14 C C17 MM8 . . . Q 2 60.455 -41.985 24.862 1 86.32 ? C17 MM8 501 D 1 
HETATM 15 C C19 MM8 . . . Q 2 59.896 -41.45 22.638 1 82.29 ? C19 MM8 501 D 1 
HETATM 16 C C20 MM8 . . . Q 2 58.443 -41.158 23.038 1 80.23 ? C20 MM8 501 D 1 
HETATM 17 C C21 MM8 . . . Q 2 56.104 -39.554 24.027 1 64.42 ? C21 MM8 501 D 1 
HETATM 18 C C22 MM8 . . . Q 2 54.9 -38.971 24.494 1 63.74 ? C22 MM8 501 D 1 
HETATM 19 C C23 MM8 . . . Q 2 52.596 -38.86 27.406 1 59.19 ? C23 MM8 501 D 1 
HETATM 20 C C24 MM8 . . . Q 2 53.001 -40.103 28.174 1 65.23 ? C24 MM8 501 D 1 
HETATM 21 C C25 MM8 . . . Q 2 51.125 -38.751 30.108 1 66.25 ? C25 MM8 501 D 1 
HETATM 22 C C26 MM8 . . . Q 2 50.327 -39.145 31.187 1 62.16 ? C26 MM8 501 D 1 
HETATM 23 C C27 MM8 . . . Q 2 48.945 -39.343 30.996 1 65.11 ? C27 MM8 501 D 1 
HETATM 24 C C28 MM8 . . . Q 2 48.081 -39.763 32.185 1 63.76 ? C28 MM8 501 D 1 
HETATM 25 N N08 MM8 . . . Q 2 51.823 -36.596 26.022 1 64.43 ? N08 MM8 501 D 1 
HETATM 26 N N15 MM8 . . . Q 2 58.294 -40.719 24.457 1 81.8 ? N15 MM8 501 D 1 
HETATM 27 N N18 MM8 . . . Q 2 60.53 -42.384 23.505 1 86.61 ? N18 MM8 501 D 1 
HETATM 28 N N29 MM8 . . . Q 2 48.6 -40.7 33.154 1 70.43 ? N29 MM8 501 D 1 
HETATM 29 O O02 MM8 . . . Q 2 46.946 -39.361 29.576 1 58.5 ? O02 MM8 501 D 1 
HETATM 30 O O30 MM8 . . . Q 2 47.001 -39.315 32.314 1 62.75 ? O30 MM8 501 D 1 
HETATM 31 H H012 MM8 . . . Q 2 46.879 -39.612 27.642 1 73.8 ? H012 MM8 501 D 1 
HETATM 32 H H013 MM8 . . . Q 2 46.515 -38.188 28.078 1 73.8 ? H013 MM8 501 D 1 
HETATM 33 H H011 MM8 . . . Q 2 45.505 -39.328 28.26 1 73.8 ? H011 MM8 501 D 1 
HETATM 34 H H041 MM8 . . . Q 2 48.79 -38.628 27.812 1 66.98 ? H041 MM8 501 D 1 
HETATM 35 H H071 MM8 . . . Q 2 50.301 -36.587 27.253 1 67.94 ? H071 MM8 501 D 1 
HETATM 36 H H091 MM8 . . . Q 2 53.445 -36.9 24.958 1 75.66 ? H091 MM8 501 D 1 
HETATM 37 H H121 MM8 . . . Q 2 55.375 -39.439 27.681 1 80.88 ? H121 MM8 501 D 1 
HETATM 38 H H131 MM8 . . . Q 2 57.328 -40.437 26.917 1 83.04 ? H131 MM8 501 D 1 
HETATM 39 H H162 MM8 . . . Q 2 59.041 -41.382 26.199 1 98.36 ? H162 MM8 501 D 1 
HETATM 40 H H161 MM8 . . . Q 2 58.541 -42.521 25.307 1 98.36 ? H161 MM8 501 D 1 
HETATM 41 H H171 MM8 . . . Q 2 60.817 -42.666 25.398 1 103.47 ? H171 MM8 501 D 1 
HETATM 42 H H172 MM8 . . . Q 2 60.961 -41.202 24.975 1 103.47 ? H172 MM8 501 D 1 
HETATM 43 H H191 MM8 . . . Q 2 59.904 -41.796 21.765 1 98.63 ? H191 MM8 501 D 1 
HETATM 44 H H192 MM8 . . . Q 2 60.38 -40.646 22.654 1 98.63 ? H192 MM8 501 D 1 
HETATM 45 H H201 MM8 . . . Q 2 58.111 -40.48 22.48 1 96.16 ? H201 MM8 501 D 1 
HETATM 46 H H202 MM8 . . . Q 2 57.937 -41.938 22.912 1 96.16 ? H202 MM8 501 D 1 
HETATM 47 H H211 MM8 . . . Q 2 56.286 -39.573 23.117 1 77.19 ? H211 MM8 501 D 1 
HETATM 48 H H221 MM8 . . . Q 2 54.301 -38.603 23.887 1 76.36 ? H221 MM8 501 D 1 
HETATM 49 H H241 MM8 . . . Q 2 52.232 -40.538 28.493 1 78.16 ? H241 MM8 501 D 1 
HETATM 50 H H243 MM8 . . . Q 2 53.546 -39.86 28.898 1 78.16 ? H243 MM8 501 D 1 
HETATM 51 H H242 MM8 . . . Q 2 53.474 -40.682 27.605 1 78.16 ? H242 MM8 501 D 1 
HETATM 52 H H251 MM8 . . . Q 2 52.034 -38.606 30.236 1 79.38 ? H251 MM8 501 D 1 
HETATM 53 H H261 MM8 . . . Q 2 50.706 -39.274 32.025 1 74.47 ? H261 MM8 501 D 1 
HETATM 54 H H181 MM8 . . . Q 2 60.17 -43.168 23.408 1 103.81 ? H181 MM8 501 D 1 
HETATM 55 H H291 MM8 . . . Q 2 48.118 -40.938 33.826 1 84.4 ? H291 MM8 501 D 1 
HETATM 56 H H292 MM8 . . . Q 2 49.39 -41.027 33.055 1 84.4 ? H292 MM8 501 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           56 
#